Index Catalog // ScholarsArchive@OSU

Genome-Wide Profiling and Analysis of Arabidopsis siRNAs

Creator:: Kasschau, Kristin D., Fahlgren, Noah, Chapman, Elisabeth J., Sullivan, Christopher M., Cumbie, Jason S., Givan, Scott A., and Carrington, James C.
Abstract:: Eukaryotes contain a diversified set of small RNA-guided pathways that control genes, repeated sequences, and viruses at the transcriptional and posttranscriptional levels. Genome-wide profiles and analyses of small RNAs, particularly the large class of 24-nucleotide (nt) short interfering RNAs (siRNAs), were done for wild-type Arabidopsis thaliana and silencing pathway mutants...
Resource Type:: Article
Full Text:: / L, LL. ___________ a I Lit I Ji i iLi If,l.i JLII iii.L J i RNA miR 171 IR TAS1c 172 TAS2

High-Throughput Sequencing of Arabidopsis microRNAs : Evidence for Frequent Birth and Death of MIRNA Genes

Creator:: Fahlgren, Noah, Howell, Miya D., Kasschau, Kristin D., Sullivan, Christopher M., Cumbie, Jason S., Givan, Scott A., Law, Theresa F., Grant, Sarah R., Dangl, Jeffrey L., and Carrington, James C.
Abstract:: In plants, microRNAs (miRNAs) comprise one of two classes of small RNAs that function primarily as negative regulators at the posttranscriptional level. Several MIRNA genes in the plant kingdom are ancient, with conservation extending between angiosperms and the mosses, whereas many others are more recently evolved. Here, we use deep...
Resource Type:: Article
Full Text:: . Kasschau1, Elisabeth J. Chapman1,2, Christopher M. Sullivan1, Jason S. Cumbie1, Scott A. Givan1, Theresa F

Reproductive phase locking of mosquito populations in response to rainfall frequency

Creator:: Shaman, Jeffrey and Day, Jonathan F.
Abstract:: The frequency of moderate to heavy rainfall events is projected to change in response to global warming. Here we show that these hydrologic changes may have a profound effect on mosquito population dynamics and rates of mosquito-borne disease transmission. We develop a simple model, which treats the mosquito reproductive cycle...
Resource Type:: Article
Full Text:: have a profound effect on the transmission rates of some mosquito-borne diseases. Citation: Shaman J

The Generation Challenge Programme Platform: Semantic Standards and Workbench for Crop Science

Creator:: Bruskiewich, Richard, Senger, Martin, Davenport, Guy, Ruiz, Manuel, Rouard, Mathieu, Hazekamp, Tom, Takeya, Masaru, Doi, Koji, Satoh, Kouji, Costa, Marcos, Simon, Reinhard, Balaji, Jayashree, Akintunde, Akinnola, Mauleon, Ramil, Wanchana, Samart, Shah, Trushar, Anacleto, Mylah, Portugal, Arllet, Ulat, Victor Jun, Thongjuea, Supat, Braak, Kyle, Ritter, Sebastian, Dereeper, Alexis, Skofic, Milko, Rojas, Edwin, Martins, Natalia, Pappas, Georgios, Alamban, Ryan, Almodiel, Roque, Barboza, Lord Hendrix, Detras, Jeffrey, Manansala, Kevin, Mendoza, Michael Jonathan, Morales, Jeffrey, Peralta, Barry, Valerio, Rowena, Zhang, Yi, Gregorio, Sergio, Hermocilla, Joseph, Echavez, Michael, Yap, Jan Michael, Farmer, Andrew, Schiltz, Gary, Lee, Jennifer, Casstevens, Terry, Jaiswal, Pankaj, Meintjes, Ayton, Wilkinson, Mark, Good, Benjamin, Wagner, James, Morris, Jane, Marshall, David, Collins, Anthony, Kikuchi, Shoshi, Metz, Thomas, McLaren, Graham, and van Hintum, Theo
Abstract:: The Generation Challenge programme (GCP) is a global crop research consortium directed toward crop improvement through the application of comparative biology and genetic resources characterization to plant breeding. A key consortium research activity is the development of a GCP crop bioinformatics platform to support GCP research. This platform includes the...
Resource Type:: Article
Full Text:: , Cedex 5, France 4Bioversity International, Via dei Tre Denari 472/a, 00057 Maccarese (Fiumicino), Rome

Genetic and Functional Diversification of Small RNA Pathways in Plants

Creator:: Xie, Zhixin, Johansen, Lisa K., Gustafan, Adam M., Kasschau, Kristin D., Lellis, Andrew D., Zilberman, Daniel, Jacobsen, Steven E., and Carrington, James C.
Abstract:: Multicellular eukaryotes produce small RNA molecules (approximately 21–24 nucleotides) of two general types, microRNA (miRNA) and short interfering RNA (siRNA). They collectively function as sequence-specific guides to silence or regulate genes, transposons, and viruses and to modify chromatin and genome structure. Formation or activity of small RNAs requires factors belonging...
Resource Type:: Article
Full Text:: proteins. Using a series of insertion mutants of Arabidopsis thaliana, unique functions for three DCL

Status of the European Green Crab in Oregon Estuaries in 2004

Creator:: Yamada, Sylvia Behrens, Beccklund, Marsha, Dudoit, Chana, and Becklund, Marsha
Abstract:: Prepared for the Pacific States Marine Fisheries Commission and the Alaska Department of Fish of Game.
Resource Type:: Technical Report
Full Text:: crustacean in a temperate estuary. Biological Invasions 5 (1) 33-43. 12 Huyer, A., J.A. Barth, J

Status of the European Green Crab in Oregon Estuaries, Fall 2003

Creator:: Yamada, Sylvia Behrens and Becklund, Marsha
Abstract:: Prepared for the Pacific States Marine Fisheries Commission and the Alaska Department of Fish of Game.
Resource Type:: Technical Report
Full Text:: . Huyer, A., J.A. Barth, J. Fleischbein, P.M. Kosro, R.L. Smith 1998. The Coastal Ocean off Oregon and

Status of the European Green Crab in Oregon and Washington Estuaries Final Report November 2006

Creator:: Yamada, Sylvia Behrens and Randall, Andrea
Abstract:: Prepared for Aquatic Nuisance Species Project, Pacific States Marine Fisheries Commission.
Resource Type:: Technical Report
Full Text:: Summary Following the last El Niño of 1997-98, a strong cohort of young green crabs appeared in

Status of the European Green Crab in Oregon Estuaries during the Summer of 2002

Creator:: Yamada, Sylvia Behrens and Davidson, Tim
Abstract:: Prepared for the Pacific States Marine Fisheries Commission and the Alaska Department of Fish of Game.
Resource Type:: Technical Report
Full Text:: estuaries by the European green crab, Carcinus maenas, caused much initial alarm. A large 1997-98

ScholarsArchive@OSU

Genome-Wide Profiling and Analysis of Arabidopsis siRNAs

High-Throughput Sequencing of Arabidopsis microRNAs : Evidence for Frequent Birth and Death of MIRNA Genes

Reproductive phase locking of mosquito populations in response to rainfall frequency

The Generation Challenge Programme Platform: Semantic Standards and Workbench for Crop Science

Genetic and Functional Diversification of Small RNA Pathways in Plants

Status of the European Green Crab in Oregon Estuaries in 2004

Status of the European Green Crab in Oregon Estuaries, Fall 2003

Status of the European Green Crab in Oregon and Washington Estuaries Final Report November 2006

Status of the European Green Crab in Oregon Estuaries during the Summer of 2002

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