Index Catalog // ScholarsArchive@OSU

Larval development in the Pacific oyster and the impacts of ocean acidification : differential genetic effects in wild and domesticated stocks

Creator:: Durland, Evan, Pierre De Wit,, Meyer, Eli, and Langdon, Chris
Abstract:: The adaptive capacity of marine calcifiers to ocean acidification (OA) is a topic of great interest to evolutionary biologists and ecologists. Previous studies have provided evidence to suggest that larval resilience to high pCO2 seawater for these species is a trait with a genetic basis and variability in natural populations....
Resource Type:: Article

Temporally balanced selection during development of larval Pacific oysters (Crassostrea gigas) inherently preserves genetic diversity within offspring

Creator:: Durland, Evan, De Wit, Pierre, and Langdon, Chris
Abstract:: Balancing selection is one of the mechanisms which has been proposed to explain the maintenance of genetic diversity in species across generations. For species with large populations and complex life histories, however, heterogeneous selection pressures may create a scenario in which the net effects of selection are balanced across developmental...
Resource Type:: Article

Sablefish (Anoplopoma fimbra Pallas, 1814) plasma biochemistry and hematology reference intervals including blood cell morphology

Creator:: Schubiger, Carla B., Gorman, M. Elena, Johns, Jennifer L., Arkoosh, Mary R., and Dietrich, Joseph P.
Abstract:: Plasma biochemistry and hematology reference intervals are integral health assessment tools in all medical fields, including aquatic animal health. As sablefish (Anoplopoma fimbria) are becoming aquaculturally and economically more important, this manuscript provides essential reference intervals (RI) for their plasma biochemistry and hematology along with reference photomicrographs of blood cells...
Resource Type:: Article

Discovery of a dune-building hybrid beachgrass (Ammophila arenaria × A. breviligulata) in the U.S. Pacific Northwest

Creator:: Mostow, Rebecca S., Barreto, Felipe, Biel, Reuben, Meyer, Eli, and Hacker, Sally D.
Abstract:: The production of novel hybrid zones is an ecologically important consequence of globally increasing rates of species introductions and invasions. Interspecific hybridization can facilitate gene flow between parent species or produce novel taxa that may alter invasion dynamics or ecosystem services. The coastal sand dunes of the U.S. Pacific Northwest...
Resource Type:: Article

Participatory GIS mapping highlights indirect use and existence values of coastal resources and marine conservation areas

Creator:: Scully-Engelmeyer, Kaegan M., Granek, Elise F., Nielsen-Pincus, Max, and Brown, Greg
Abstract:: Consideration of social and cultural dimensions in coastal and marine planning has increased and ecosystem services provide important framing to investigate values and priorities associated with these systems. Research efforts in coastal communities offer insights on social dimensions of ocean and coastal management decisions, but questions remain about how demographics...
Resource Type:: Article

Changing the culture of coastal, ocean, and marine sciences : strategies for individual and collective actions

Creator:: Behl, Mona, Cooper, Sharon, Garza, Corey, Kolesar, Sarah E., Legg, Sonya, Lewis, Jonathan C., White, Lisa, and Jones, Brandon
Abstract:: Geoscience is plagued with structural and systemic barriers that prevent people of historically excluded groups from fully participating in, contributing to, and accruing the benefits of geosciences. A change in the culture of our learning and working environments is required to dismantle barriers and promote belonging, accessibility, justice, equity, diversity,...
Resource Type:: Article

Exploring biophysical linkages between coastal forestry management practices and aquatic bivalve contaminant exposure

Creator:: Scully-Engelmeyer, Kaegan, Granek, Elise F., Nielsen-Pincus, Max, Lanier, Andy, Rumrill, Steven S., Moran, Patrick, Nilsen, Elena, Hladik, Michelle L., and Pillsbury, Lori
Abstract:: Terrestrial land use activities present cross-ecosystem threats to riverine and marine species and processes. Specifically, pesticide runoff can disrupt hormonal, reproductive, and developmental processes in aquatic organisms, yet non-point source pollution is difficult to trace and quantify. In Oregon, U.S.A., state and federal forestry pesticide regulations, designed to meet regulatory...
Resource Type:: Article

Quantifying uncertainty in exposure to coastal hazards associated with both climate change and adaptation strategies : a U.S. Pacific Northwest alternative coastal futures analysis

Creator:: Mills, Alexis K., Ruggiero, Peter, Bolte, John P., Serafin, Katherine A., and Lipiec, Eva
Abstract:: Coastal communities face heightened risk to coastal flooding and erosion hazards due to sea-level rise, changing storminess patterns, and evolving human development pressures. Incorporating uncertainty associated with both climate change and the range of possible adaptation measures is essential for projecting the evolving exposure to coastal flooding and erosion, as...
Resource Type:: Article

The silence of the clams: Forestry registered pesticides as multiple stressors on soft-shell clams

Creator:: Tissot, Alexandra G., Granek, Elise F., Thompson, Anne W., Hladik, Michelle L., Moran, Patrick W., and Scully-Engelmeyer, Kaegan
Abstract:: Contaminants are ubiquitous in the environment, often reaching aquatic systems. Combinations of forestry use pesticides have been detected in both water and aquatic organism tissue samples in coastal systems. Yet, most toxicological studies focus on the effects of these pesticides individually, at high doses, and over acute time periods, which,...
Resource Type:: Article

A doubled down invasion of the northeast Pacific by the Asian mud shrimp, Upogebia major and its coevolved bopyrid isopod parasite, Orthione griffenis

Creator:: Chapman, John W., Li, Jingchun, McGowan, Michael F., Breitenstein, Ralph A., Appy, Ralph, Hieb, Kathryn A., Piotrowski, Christina N., and Elder, Leanne E.
Abstract:: Dramatic declines of the native northeast Pacific mud shrimp, Upogebia pugettensis over the last three decades have occurred in response to intense infestations by the Asian bopyrid isopod parasite, Orthione griffenis, that was introduced in the 1980s. We report herein the arrival of the Asian mud shrimp, Upogebia major, in...
Resource Type:: Article

Limits to biomass productivity during fed-batch cultivation of Laminaria saccharina female gametophyte cells in a stirred-tank photobioreactor

Creator:: Ramanan, Sundar and Rorrer, Gregory L.
Abstract:: This study compared the growth of Laminaria saccharina female gametophyte filamentous cell suspension cultures in a stirred-tank photobioreactor under batch and fed-batch nutrient addition modes over a 48-day cultivation period. Cultures were grown on GP2 artificial seawater medium (0.75 mM nitrate, N:P = 16:1) at pH 8.3 without iron or copper. Total...
Resource Type:: Article

More than one million barriers fragment Europe’s rivers

Creator:: Belletti, Barbara, Garcia de Leaniz, Carlos, Jones, Joshua, Bizzi, Simone, Börger, Luca, Segura, Gilles, Castelletti, Andrea, van de Bund, Wouter, Aarestrup, Kim, Barry, James, Belka, Kamila, Berkhuysen, Arjan, Birnie-Gauvin, Kim, Bussettini, Martina, Carolli, Mauro, Consuegra, Sofia, Dopico, Eduardo, Feierfeil, Tim, Fernández, Sara, Fernandez Garrido, Pao, Garcia-Vazquez, Eva, Garrido, Sara, Giannico, Guillermo, Gough, Peter, Jepsen, Niels, Jones, Peter E., Kemp, Paul, Kerr, Jim, King, James, Łapińska, Małgorzata, Lázaro, Gloria, Lucas, Martyn C., Marcello, Lucio, Martin, Patrick, McGinnity, Phillip, O’Hanley, Jesse, Olivo del Amo, Rosa, Parasiewicz, Piotr, Pusch, Martin, Rincon, Gonzalo, Rodriguez, Cesar, Royte, Joshua, Schneider, Claus Till, Tummers, Jeroen S., Vallesi, Sergio, Vowles, Andrew, Verspoor, Eric, Wanningen, Herman, Wantzen, Karl M., Wildman, Laura, and Zalewski, Maciej
Abstract:: Rivers support some of Earth’s richest biodiversity and provide essential ecosystem services to society, but they are often fragmented by barriers to free flow. In Europe, attempts to quantify river connectivity have been hampered by the absence of a harmonized barrier database. Here we show that there are at least...
Resource Type:: Article

Abundance, distribution, and feeding ecology of Pyrosoma atlanticum in the Northern California Current

Creator:: Schram, Julie B., Sorensen, Hilarie L., Brodeur, Richard D., Galloway, Aaron W. E., and Sutherland, Kelly R.
Abstract:: During 2016-2018, unprecedented aggregations of the colonial pelagic tunicate Pyrosoma atlanticum were observed in the Northern California Current (NCC). Pyrosomes are common in tropical and sub-tropical ocean waters, but little is known about their abundance, distribution, and trophic ecology in mid-latitude systems. To assess these factors, pyrosomes were collected during...
Resource Type:: Article

The use of a species-specific health and welfare assessment tool for the giant pacific octopus, Enteroctopus dofleini

Creator:: Holst, Meghan M. and Miller-Morgan, Tim
Abstract:: Cephalopods are increasingly viewed as sentient animals that require the same welfare consideration as their vertebrate counterparts. In this study, an observational welfare assessment tool developed by the EU Directive was revised to be species-specific for the giant Pacific octopus, Enteroctopus dofleini. This E. dofleini health and welfare assessment tool...
Resource Type:: Article

Assessment of fecal steroid and thyroid hormone metabolites in eastern North Pacific gray whales

Creator:: Lemos, Leila S., Olsen, Amy, Smith, Angela, Chandler, Todd E., Larson, Shawn, Hunt, Kathleen, and Torres, Leigh G.
Abstract:: Baleen whale fecal samples have high potential for endocrine monitoring, which can be used as a non-invasive tool to identify the physiological response to disturbance events and describe population health and vital rates. In this study, we used commercial enzyme-linked immunosorbent assays to validate and quantify fecal steroid (progestins, androgens...
Resource Type:: Article

Ghost factors of laboratory carbonate chemistry are haunting our experiments

Creator:: Galloway, A. W. E., von Dassow, G., Schram, J. B., Klinger, T., Hill, T. M., Lowe, A. T., Chan, F., Yoshioka, R. M., and Kroeker, K. J.
Abstract:: For many historical and contemporary experimental studies in marine biology, seawater carbonate chemistry remains a ghost factor, an uncontrolled, unmeasured, and often dynamic variable affecting experimental organisms or the treatments to which investigators subject them. We highlight how environmental variability, such as seasonal upwelling and biological respiration, drive variation in...
Resource Type:: Article

Fine-scale spatial and temporal genomic variation among Dungeness crab Cancer magister larval recruits in the California Current Ecosystem

Creator:: Lee, Elizabeth M. J. and O'Malley, Kathleen G.
Abstract:: Dynamic marine environments can shape complex spatial and temporal patterns in the population connectivity of marine species, and this is often exemplified in species with long larval phases. Here, we used a genotyping-by-sequencing (GBS) approach to examine fine-scale spatial and temporal genomic variation among Dungeness crab Cancer magister larval recruits...
Resource Type:: Article

Teacher perceptions of training and pedagogical value of cross-reality and sensor data from smart buildings

Creator:: Rowe, Shawn, Riggio, Mariapaola, De Amicis, Raffaele, and Rowe, Susan R.
Abstract:: This paper discusses elementary, and secondary (K-12) teachers’ perceptions of cross-reality (XR) tools for data visualization and use of sensor data from the built environment in classroom curricula. Our objective was to explore the use of sensor-informed XR in the built environment and civil engineering (BECE) field to support K-12...
Resource Type:: Article

Draft Genome Sequence of Streptomyces sp. Strain ventii, Isolated from a Microbial Mat near Hydrothermal Vents within the Axial Seamount in the Pacific Ocean, and Resequencing of the Type Strains Streptomyces lonarensis NCL 716 and Streptomyces bohaiensis 11A07

Creator:: Loughran, Rachel M., Mitchell, Edward A., Vining, Oliver B., Gallegos, David A., Deadmond, Monica C., Wasson, Benjamin J., Pfannmuller, Kaysa M., Paddock, Brie E., Koyack, Marc J., Oline, David K., Ushijima, Blake, Saw, Jimmy H., McPhail, Kerry L., and Videau, Patrick
Abstract:: The draft genome of Streptomyces sp. strain ventii, an environmental isolate recovered from deep-sea hydrothermal vents in the Pacific Ocean, is presented along with the resequenced draft genomes of the type strains Streptomyces bohaiensis 11A07 and Streptomyces lonarensis NCL 716.
Resource Type:: Article

The social geometry of collaborative flood risk management: a hydrosocial case study of Tillamook County, Oregon

Creator:: Haeffner, Melissa and Hellman, Dana
Abstract:: Coastal and riparian flooding are costly and disruptive natural hazards and already a regular part of life in some areas of the USA. Flooding events caused by sea-level rise and climate change are expected to increase in frequency and severity in the future, creating social, ecological, and economic problems at...
Resource Type:: Article

The Deep Sea and Me : using a science center exhibit to promote lasting public literacy and elucidate public perception of the deep sea

Creator:: Darr, Katherine D., East, Jennifer L., Seabrook, Sarah, Dundas, Steven J., and Thurber, Andrew R.
Abstract:: A critical barrier to effective management of deep-sea resources is a lack of understanding by society of the benefits received from the oceans. To address this knowledge gap, we applied an iterative design-based research methodology to evaluate (1) how to effectively use an exhibit to increase public literacy of the...
Resource Type:: Article

Estimating option values and spillover damages for coastal protection : evidence from Oregon’s Planning Goal 18

Creator:: Dundas, Steven J. and Lewis, David J.
Abstract:: Estimating nonmarket benefits for erosion protection can help inform better decision making and policies for communities to adapt to climate change. We estimate private values for a coastal protection option in an empirical setting subject to irreversible loss from coastal erosion and a land-use policy that provides identifying variation in...
Resource Type:: Article

Intra‐ and inter‐annual variation in gray whale body condition on a foraging ground

Creator:: Soledade Lemos, Leila, Burnett, Jonathan D., Chandler, Todd E., Sumich, James L., and Torres, Leigh G.
Abstract:: Baleen whales store energy gained on foraging grounds to support reproduction and other metabolic needs while fasting for long periods during migration. Whale body condition can be used to monitor foraging success, and thus better understand and anticipate individual‐ and population‐level trends in reproduction and survival. We assessed the body...
Resource Type:: Article

Big fishery, big data, and little crabs : using genomic methods to examine the seasonal recruitment patterns of early life stage dungeness crab (Cancer magister) in the California Current ecosystem

Creator:: Lee, Elizabeth M. J. and O'Malley, Kathleen
Abstract:: The California Current Ecosystem (CCE) is a dynamic marine ecosystem from which many socioeconomically important fisheries species are harvested. Here, a genotyping-by-sequencing (GBS) approach was used to examine genomic variation in an early life stage (megalopae) of the Dungeness crab (Cancer magister), which constitutes the most valuable single-species commercial fishery...
Resource Type:: Article

Controls on sediment accretion and blue carbon burial in tidal saline wetlands : insights from the Oregon Coast, USA

Creator:: Peck, Erin K., Wheatcroft, Robert A., and Brophy, Laura S.
Abstract:: Oregon estuaries provide important opportunities to assess controls on tidal saline wetland carbon burial and sediment accretion as both rates of relative sea level rise (RSLR; −1.4 ± 0.9 to 2.8 ± 0.8 mm yr⁻¹) and fluvial suspended sediment load relative to estuary area (0.23 to 17 × 10³ t...
Resource Type:: Article

ScholarsArchive@OSU

Larval development in the Pacific oyster and the impacts of ocean acidification : differential genetic effects in wild and domesticated stocks

Temporally balanced selection during development of larval Pacific oysters (Crassostrea gigas) inherently preserves genetic diversity within offspring

Sablefish (Anoplopoma fimbra Pallas, 1814) plasma biochemistry and hematology reference intervals including blood cell morphology

Discovery of a dune-building hybrid beachgrass (Ammophila arenaria × A. breviligulata) in the U.S. Pacific Northwest

Participatory GIS mapping highlights indirect use and existence values of coastal resources and marine conservation areas

Changing the culture of coastal, ocean, and marine sciences : strategies for individual and collective actions

Exploring biophysical linkages between coastal forestry management practices and aquatic bivalve contaminant exposure

Quantifying uncertainty in exposure to coastal hazards associated with both climate change and adaptation strategies : a U.S. Pacific Northwest alternative coastal futures analysis

The silence of the clams: Forestry registered pesticides as multiple stressors on soft-shell clams

A doubled down invasion of the northeast Pacific by the Asian mud shrimp, Upogebia major and its coevolved bopyrid isopod parasite, Orthione griffenis

Limits to biomass productivity during fed-batch cultivation of Laminaria saccharina female gametophyte cells in a stirred-tank photobioreactor

More than one million barriers fragment Europe’s rivers

Abundance, distribution, and feeding ecology of Pyrosoma atlanticum in the Northern California Current

The use of a species-specific health and welfare assessment tool for the giant pacific octopus, Enteroctopus dofleini

Assessment of fecal steroid and thyroid hormone metabolites in eastern North Pacific gray whales

Ghost factors of laboratory carbonate chemistry are haunting our experiments

Fine-scale spatial and temporal genomic variation among Dungeness crab Cancer magister larval recruits in the California Current Ecosystem

Teacher perceptions of training and pedagogical value of cross-reality and sensor data from smart buildings

Draft Genome Sequence of Streptomyces sp. Strain ventii, Isolated from a Microbial Mat near Hydrothermal Vents within the Axial Seamount in the Pacific Ocean, and Resequencing of the Type Strains Streptomyces lonarensis NCL 716 and Streptomyces bohaiensis 11A07

The social geometry of collaborative flood risk management: a hydrosocial case study of Tillamook County, Oregon

The Deep Sea and Me : using a science center exhibit to promote lasting public literacy and elucidate public perception of the deep sea

Estimating option values and spillover damages for coastal protection : evidence from Oregon’s Planning Goal 18

Intra‐ and inter‐annual variation in gray whale body condition on a foraging ground

Big fishery, big data, and little crabs : using genomic methods to examine the seasonal recruitment patterns of early life stage dungeness crab (Cancer magister) in the California Current ecosystem

Controls on sediment accretion and blue carbon burial in tidal saline wetlands : insights from the Oregon Coast, USA

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