In host-associated microbiomes, the mechanisms that regulate community composition or the principles that govern dynamics remain far from clear. However, understanding how the structure of microbial communities shift as the system moves away from a healthy state is critical to assessing disease progression and to formulate any potential mitigation strategy....
The marine psychrophilic bacterium Vibrio marinus MP-4
possessed a maximum temperature and hydrostatic pressure of
20 C and 425 atm for growth. The effects of temperatures of 21 and
25 C and hydrostatic pressures of 200, 400, 500, and 1,000 atm on
protein, RNA and DNA synthesis by V. marinus...
The relationship of temperature and salinity to protein synthesis
was determined for cells of Vibrio marinus, MP-1. Protein synthesis
was measured by the incorporation of radioactive proline into
hot trichloroacetic acid precipitable material. At all salinities protein
synthesis occurred at 15°C and 20°C but not at 25°C. The critical
temperature...
Renibacterium salmoninarum produces bacterial kidney
disease (BKD) in salmonid fish. Soluble antigen(s) (SA) produced
by the bacterium was characterized by physicochemical,
functional and immunological methods. The molecular weight
determination by SDS-PAGE analysis of SA yielded 14 different
molecular weight species. Seven of these species were
prominent, 57 kd protein being...
A great deal of research has been focused on the microbiomes of terrestrial angiosperms (flowering plants), but much less research has been performed on the microbiomes of aquatic angiosperms (Turner et al. 2013). Eelgrass beds are extremely productive ecosystems that provide habitat for many marine organisms, such as fish, shellfish,...
Escherichia coli K12, UC41 (an auxotroph) and UC175 (a wild type)
were used to determine possible relationships between binding, uptake,
and respiration and minimum growth temperature.
Both E. coli strains had a minimum growth temperature of 8.0 C in
glucose minimal medium when cells were previously grown at 15 C....
The focus of this thesis is to design, characterize, and apply novel computational methods and molecular systems to interrogate heterogeneous human gut microbiome-related phenomena. In Chapter 2, I design, implement, and characterize a method for embedding co-occurrence patterns derived from massive 16s amplicon datasets. I use this method to 1....
The freshwater polychaete Manayunkia speciosa was identified as an obligate host of the salmonid parasite Ceratomyxa shasta in 1997, prompting increased research on the small benthic invertebrate. Ceratomyxa shasta infection in fish can cause mortality, and presents a disease risk for both hatchery and wild salmon and trout. Ceratomyxa shasta...
Research on natural environments, over the last decade, is replete with microbial diversity studies that used culture-independent approaches. The cloning and sequencing of the 16S rRNA genes has been the driving force in the expansion of awareness about the great diversity of previously undiscovered microorganisms. Well-known uncultured groups of microorganisms...