Seasonality is defined as a change in mood and behavior with the seasons. Research shows there is a possible connection between vitamin D levels and mood (Murphy & Wagner, 2008; Lansdowne & Provost, 1998). Given that vitamin D is produced when skin is exposed to sunlight and varies with sun...
Instance segmentation, the classification and localization of objects in an image, is a problem in cellular biophysics due to the physiological relevance of cell morphology. Particularly, cancer cells migrate in tissue space by changing their body shape similarly to how humans extend their limbs to swim through water. Monitoring such...
The main goal of this project is to implement an algorithmic music composition procedure and present all procedures and results in a reproducible fashion by creating a web application produced by R. To approach the implementation of the algorithmic composition of music, we start by exploring various models, but ultimately...
Perdeutero-spiropentane (C₅D₈) has been synthesized and infrared and Raman spectra are reported for the first time. Wavenumber assignments are made for most of the fundamental vibrational modes. Gas phase infrared spectra were recorded at a resolution (0.002 cm⁻¹) sufficient to resolve individual rovibrational lines and show evidence of strong Coriolis...
Renibacterium salmoninarum is the causative agent of bacterial kidney disease in both
wild and farmed salmonid species worldwide. The genome of this pathogen has
significant synteny to the ubiquitous, soil-dwelling Arthrobacter spp. though it is 1.9 Mb
smaller, suggesting that reductive evolution has occurred. Recently, our group finished
sequencing and...
It has been observed and documented that Pisaster ochraceus has very striking colors, but the reasons behind the coloration are still unknown. Three coloration categories were determined and used for a feeding trial study to investigate the effects of diet on coloration in Pisaster ochraceus. This study involved 30 hand...
Wildfires can affect soil physical properties, resulting in changes in infiltration, hillslope runoff, groundwater recharge, and sediment and dissolved nutrients to streams. In November 2016, the Chimney Tops 2 Fire burned 4,617 ha of Appalachian hardwood forest in eastern Tennessee. A portion of the fire burned through a National Ecological...
This study evaluated the memory and visual discrimination capabilities of Enteroctopus dofleini, the Giant Pacific Octopus. Octopuses have been known to have advance sensory capabilities and through this study we challenged our specimen to remember and actively choose a specific patterned jar based on a visual pattern and positive reinforcement....
This thesis discusses the African American authors Richard Wright and James Baldwin, and their views regarding how literature should be written. These views are examined as laid out in a selection of each author‟s essays, as well as through an analysis of the characters Bigger Thomas and Rufus Scott in...
In order to reduce the cost of lignocellulosic ethanol production, a model was previously developed to predict the amount of fermentable sugar released based on parameters concerning both biomass and enzymes. To validate this model, enzymatic hydrolysis must be carried out using individual purified cellulase enzymes. Endo-1,4-β-D-glucanase I (EG I),...
In order to reduce the cost of lignocellulosic ethanol production, a model was previously developed to predict the amount of fermentable sugar released based on parameters concerning both biomass and enzymes. To validate this model, enzymatic hydrolysis must be carried out using individual purified cellulase enzymes. Endo-1,4-β-D-glucanase I (EG I),...
As genetically modified products come under greater production, tensions surrounding the potential benefits and harms of the technology have appeared in divergent policy between the European Union (EU) and certain member states. The purpose of this thesis is to consider whether some type of international law, also called an environmental...
Youth in the United States of America are disproportionately affected by the School-to-Prison Pipeline, especially low-income and/or BIPOC youth. This is a result of centuries of historical classism and racism that serve as the foundation of the United States and is directly correlated with mass incarceration and the Prison Industrial...
This analysis seeks to (1) establish a typology of the post-medieval ceramics from the Malkin Tower site, (2) determine vessel forms and extrapolate site function, and (3) establish a tentative chronology for the site. Over four hundred post-medieval ceramic artifacts from the Malkin Tower site were analysed via descriptive and...
Background:
There are over four billion YouTube views per day with “music” the most searched topic. Among US internet users, 8.3 million YouTube users are under 18 years old. Incorporation of substance use imagery in YouTube videos has a considerable potential influence on young viewing audience behavior. This study identifies...
Keywords: Invertebrate Zoology 451-452; Anthopleura elegantissima; Anthopleura xanthogrammica; Intertidal organisms; Coelenerates; Sea anemones; Nye Beach, Newport, Oregon; Boiler Bay, Depoe Bay, Oregon; Yaquina Head
The public health framework of harm reduction was evaluated in one care setting to determine its potential for use in other fields of healthcare. Qualitative interviews were conducted with 11 clients of the HIV Alliance’s needle exchange program. Analysis of client responses revealed three themes: 1) harm reduction methods work...
Since this treatise is to deal only with the
construction of one special machine it is unnecessary
to go into an extended discussion of dynamo electric
machinery in general. Some of the parts common to all
electric machinery of this character will be mentioned
and then a short account of...
The agricultural industry in the Western United States continues to possess issues of overwatering, accounting for over 80% of consumed water per year in the country. While technologies such as satellite imaging and sensor networks have slowly improved irrigation Best Management Practices to reduce superfluous water consumption, limitations associated with...
Demanding task environments (e.g., supervising a remotely piloted aircraft) require performing tasks quickly and accurately; however, periods of low and high operator workload can decrease task performance. Intelligent modulation of the system’s demands and interaction modality in response to changes in operator workload state may increase performance by avoiding undesirable...
Objective: In 2018, suicide was the leading cause of death for individuals between the ages of 10-24 in Oregon (OHA, 2019) and was the second leading cause of death for this age range in 2020 (OHA, 2021). In 2019, 12% of Black high school students reported a suicide attempt in...
Objective: Alcohol and cannabis use and co-use among college students is prevalent in the United States (Bravo et al., 2021). These substances have been linked to poor collegiate academic performance in past research. The present study examines varying levels of single-substance alcohol use and alcohol and cannabis co-use in their...
YouTube is a free video watching and uploading site that allows endorsing and
sharing of videos. Youth and adolescents as top viewers of YouTube may be exposed to
images and messages on tobacco, marijuana and alcohol use behaviors.
The research project entailed deriving a list of songs from the 2014...
Glioblastoma Multiform
• Type of aggressive brain cancer
• Five year survival rate of 4.70%
• Not often detected until it’s in the later stages when
the symptoms appear
• Surgery is not an effective option due to invasion and
proliferation of glioblastoma cells outside of the tumor
mass before...
BACKGROUND: The association of vitamin D with heart attack and stroke remains unclear.
METHOD: Using data from the Osteoporotic Fractures in Men Study (MrOS), we collected
dietary vitamin D data from 5,995 participants and serum (25)OH vitamin D from 1,606
participants. The association of vitamin D with prevalent heart attack...
Xenobiotic exposures may induce alternative splicing in the pre-mRNA of nuclear hormone receptor (NHR) genes, yielding unpredictable patterns of gene expression that may promote adverse drug events and promote environmental disease. Informed by observations in the androgen receptor (AR; class I NHR), whereby alternatively-spliced AR transcripts induce ligand-independent hormone signaling...
This study was conducted to determine if a time-integrated Phillips sampler was able to estimate sediment yield when compared to a reference produced by an automated sampler. Time-integrated samplers are easier to use, more cost effective, and can withstand storm events better than automated samplers, but are not designed to...
Chlamydia trachomatis is an obligate intracellular pathogen that affects millions of people worldwide via ocular or reproductive tract infection. Despite obvious differences in site of infection, there has been shown to be high levels of sequence conservation across C. trachomatis. This high level of sequence conservation is hindered with a...
Coastal dunes are dynamic and unique ecosystems. On the Pacific coast, dunes are generally dominated by the beach grasses, Ammophila breviligulata and Ammophila arenaria, two invasive species introduced in the early 1900’s to stabilize sand and create foredunes that serve to protect people who live behind them. Recently, a novel...
Forest harvest practices can impact nutrient concentrations and stream temperatures, altering aquatic ecosystems. To better inform future sustainable forest resource management practices, quantifying the impact of current practices on water quality, particularly in headwater streams is important. In this study, I quantified monthly nitrate-nitrite (N) and orthophosphate (P) concentrations, 7-day...
Myxozoans are microscopic parasites, related to corals and jellyfish. Most Myxozoa probably have two-host lifecycles that require a vertebrate (typically fish) and invertebrate (annelid or bryozoan). However no life cycle is known from the Sphaerospora lineage.
I hypothesized that the life cycle of Sphaerospora elegans, a myxozoan parasite of three-spined...
Chlamydia trachomatis is an obligate intracellular bacterium that causes diseases of the eye and urogenital tract in humans. It is the cause of the sexual transmitted infection (STI) chlamydia, the most prevalent STI worldwide, and the ocular disease trachoma, the leading cause of infectious blindness. To date there is no...
In recent decades, the occurrence of large, high severity wildfires has increased substantially in many parts of the world, including the western United States. These fires have the potential to impact water quality, aquatic ecosystems, and downstream communities for many decades. As such, it is increasingly important to understand the...
Recently, there has been an expansion of large-scale studies looking at strain variation of Brettanomyces. These studies have found variation between strains in terms of utilization of maltose and production of volatile phenols. While there is research going into this subject, there is a gap in knowledge regarding the differences...
Ceratonova shasta is a myxozoan fish parasite that impacts hatchery and wild populations of salmon and trout in the Pacific Northwest. Levels of the parasite in river water can be effectively monitored through direct filtration of parasite spores from water, extraction of total "environmental DNA" (eDNA), then quantitative polymerase chain...
Polyfunctional thiols are sulfur containing compounds that are important to the flavor and aroma profile of some foods and beverages. S. Cerevisiae has been shown in wine yeast that it is capable of producing these thiols to create a fruity aroma and flavor profile. IRC7, a gene that codes the...
Marine environments provide services for ecosystems and humans, but face many threats, including sea star wasting disease (SSWD) and ocean acidification (OA). Biological research on these threats is abundant, but there has been limited research examining the human dimensions of these threats. This thesis contains two standalone articles that explore...
In the face of increasing demand for and reduced supplies of water, methods to augment water supply and storage capacity are becoming increasingly important. In some areas, this has taken the form of aquifer storage and recovery (ASR), which involves injecting water into a well during a time of water...
Coastal dunes provide many functions and services including coastal protection, recreation, and habitat. Vegetation contributes to dune growth and stability, thereby increasing the coastal protection value of dunes. On the U.S. Pacific Northwest coast, the dominant dune grasses are the introduced non-native American beachgrass (Ammophila breviligulata) and the native American...
The purpose of this study was to investigate the effects of wildfire on soil hydraulic properties of forested hillslopes. The study site was located within the Stouts Creek wildfire, which burned approximately 10,705 ha of forest in southwestern Oregon in summer 2015. Three soil hydraulic properties (soil moisture, unsaturated hydraulic...
Chlamydiae encode a family of proteins named the polymorphic membrane proteins, or Pmps, whose role in infection and pathogenesis is unclear. The Rockey Laboratory is studying polymorphic membrane protein expression in Chlamydia abortus, a zoonotic pathogen that causes abortions in ewes. C. abortus contains 18 pmp genes, some of which...
Single nucleotide polymorphisms (SNPs) can be used as markers to infer population genetic structure. For Mycoplasma cynos, a pathogen associated with infectious respiratory disease among canines and other animals, SNPs may help to elucidate ecological and evolutionary relationships among the strains that reside in the upper respiratory tract of canines...
The Interactive Virtual Laboratories (IVLs) are a series of two-dimensional simulations designed to help students conceptually learn difficult concepts in thermodynamics. Three studies were performed to help elucidate how the IVLs affect student learning. In the first study, eight students were observed while completing one of the IVLs. The students...
Flow cytometry is a highly-extensible technology for performing rapid multi-parametric particle analysis. The use of flow cytometry has proliferated with the advent of smaller, intuitive, and more affordable instruments, along with a perpetual increase in research and medical applications. However, the technology is still largely inaccessible due to cost and...
Mentoring can have a great impact on students during their higher education career. This influential role of mentors can be found valuable for a wide variety of populations, and has specifically monumental influences for underrepresented students. The NASPA Undergraduate Fellows Program (NUFP) aims to facilitate the mentor-mentee relationship for historically...
Background: 250,000+ individuals injure an anterior cruciate ligament (ACL) in the United States annually. Individuals post-ACL surgical reconstruction (ACLR) are at elevated risk for ACL re-injury, potentially from kinematic and kinetic asymmetries. While studies have examined asymmetries at the hip and knee post-ACLR during landing, less is known about asymmetries...
Background: Lateral gene transfer (LGT) among C. trachomatis strains is common, both in isolates generated in the laboratory and those examined directly from patients. This is a challenging concept because there are very few examples of recent acquisition of foreign DNA by Chlamydia spp. There is no understanding of the...