The grape rust mite [Calepitrimerus vitis (Acari: Eriophyidae)] is an important pest of grapevines (Vitis sp.) in grape-growing regions around the world. A rapid method for extracting eriophyoid mites was adapted from earlier studies to provide integrated pest management (IPM) consultants and commercial growers with a practical, efficient, and reliable...
Since the early 1980s, several investigations have focused on developing a vaccine against Mycobacterium avium subspecies paratuberculosis (MAP), the causative agent of Johne’s disease in cattle and sheep. These studies used whole-cell inactivated vaccines that have proven useful in limiting disease progression, but have not prevented infection. In contrast, modified...
This paper presents an evaluation and validation of the Naval Research Laboratory's COAMPS® real-time forecasts during the VOCALS-REx over the area off the west coast of Chile/Peru in the Southeast Pacific during October and November 2008. The analyses focus on the marine boundary layer (MBL) structure. These forecasts are compared...
Despite the importance of fodder shrubs to small ruminant diets and production in arid and semi-arid ecosystems, they are often not considered when quantifying grazing land potential. This oversight is mainly due to the time consuming and costly traditional techniques used to estimate shrub biomass. The shrub fodder component should...
In addition to precise 3D coordinates, most light detection and ranging (LIDAR) systems also record “intensity”, loosely defined as the strength of the backscattered echo for each measured point. To date, LIDAR intensity data have proven beneficial in a wide range of applications because they are related to surface parameters,...
Nitrogen isotopes are an important tool for evaluating past biogeochemical cycling from the paleoceanographic record. However, bulk sedimentary nitrogen isotope ratios, which can be determined routinely and at minimal cost, may be altered during burial and early sedimentary diagenesis, particularly outside of continental margin settings. The causes and detailed mechanisms...
Appendicularians are ubiquitous marine grazers that use tangential filtration to collect micron and submicron prey. The food-concentrating filter (FCF) is the primary determinant of appendicularian prey selectivity, but the precise means by which it concentrates and conveys particles to the pharyngeal filter remain poorly understood. We used high-speed videography to...
Research on cetacean foraging ecology is central to our understanding of their spatial and behavioral ecology. Yet, functional mechanisms by which cetaceans detect prey across different scales remain unclear. Here, I postulate that cetaceans utilize a scale-dependent, multimodal sensory system to assess and increase prey encounters. I review the literature...
A reduced-gravity model is presented of the warm-water branch of the middepth meridional overturning circulation in a rectangular basin with a circumpolar connection. The model describes the balance between production of warm water by Ekman advection across the circumpolar current, dissipation of warm water by eddy fluxes southward across the...
In determining aerosol-cloud interactions, the properties of aerosols must be characterized in the vicinity of clouds. Numerous studies based on satellite observations have reported that aerosol optical depths increase with increasing cloud cover. Part of the increase comes from the humidification and consequent growth of aerosol particles in the moist...
Anthropogenic nitrogen (N) deposition has had substantial impacts on forests of North America. Managers seek to monitor deposition to identify areas of concern and establish critical loads, which define the amount of deposition that can be tolerated by ecosystems without causing substantial harm. We present a new monitoring approach that...
Selecting an appropriate and efficient sampling strategy in biological surveys is a major concern in ecological research, particularly when the population abundance and individual traits of the sampled population are highly structured over space. Multi-stage sampling designs typically present sampling sites as primary units. However, to collect trait data, such...
The genetic underpinnings associated with the earliest stages of plant and animal domestication have remained elusive. Because a genome-wide response to selection can take many generations, the earliest detectable changes associated with domestication may first manifest as heritable changes to global patterns of gene expression. Here, to test this hypothesis,...
Ebola viruses (EBOV) cause severe disease in humans and nonhuman primates with high mortality rates and continue to emerge in new geographic locations, including several countries in West Africa, the site of a large ongoing outbreak. Phosphorodiamidate morpholino oligomers (PMOs) are synthetic antisense molecules that are able to target mRNAs...
Background: In Drosophila, male flies require the expression of the male-specific Fruitless protein (FRU[superscript M]) within the
developing pupal and adult nervous system in order to produce male courtship and copulation behaviors. Recent
evidence has shown that specific subsets of FRU[superscript M] neurons are necessary for particular steps of courtship...
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A SNP resource for Douglas-fir: de novo transcriptome assembly and SNP detection and validation
Author(s): Howe, GT (Howe, Glenn T.)[ 1 ] ; Yu, JB (Yu, Jianbin)[ 1 ] ; Knaus, B (Knaus, Brian)[ 2 ] ; Cronn, R (Cronn, Richard)[ 2 ] ; Kolpak,...
Introduction: To date, occupational exposure assessment of electromagnetic fields (EMF) has relied on occupation-based measurements and exposure estimates. However, misclassification due to between-worker variability remains an unsolved challenge. A source-based approach, supported by detailed subject data on determinants of exposure, may allow for a more individualized exposure assessment. Detailed information...
This study explores the interrelationship between social capital and poverty, a negative indicator of well-being, in the Western United States. Econometric models that account for the endogeneity of poverty and social capital, spatial dependence, and cross-equation error correlation were used to explore two questions: is the presence of social capital...
Concentrations of domoic acid (DA) above the regulatory limit in Washington coast razor clams are usually higher on northern beaches from summer to fall. Recent field studies have confirmed that the primary source of toxic Pseudo-nitzschia (PN) cells in those seasons is a semi-retentive topographically trapped seasonal eddy located offshore...
Porous silicon prepared by low-cost and scalable magnesiothermic reactions is a promising anode material for Li-ion batteries; yet, retaining good cycling stability for such materials in electrodes of practical loading remains a challenge. Here, we engineered the nanoporous silicon from a modified magnesiothermic reaction by controlled surface oxidization forming a...
Sampling intervals of precipitation geochemistry measurements are often coarser than those required by fine-scale hydrometeorological models. This study presents a statistical method to temporally downscale geochemical tracer signals in precipitation so that they can be used in high-resolution, tracer-enabled applications. In this method, we separated the deterministic component of the...
Correlated double sampling (CDS) circuits are essential to processing the X-ray charge-coupled devices (CCDs) that have been used in the modern X-ray astronomical field. For spectroscopy observations, the energy resolution is of decisive importance. In this paper, a comprehensive study of the CDS algorithm based on the incremental Delta Sigma...
The Sagebrush Steppe Treatment Evaluation Project (SageSTEP) is an integrated long-term study that evaluates ecological effects of alternative treatments designed to reduce woody fuels and to stimulate the herbaceous understory of sagebrush steppe communities of the Intermountain West. This synopsis summarizes results through 3 yr posttreatment. Woody vegetation reduction by...
Context: Regular physical activity has increasingly been recommended to promote human health and wellbeing. However, information on participation in physical activities by people with disabilities is relatively scarce. The aim of this article is to conduct a systematically review of studies on physical activity among people with disabilities in mainland...
The 2010 Deepwater Horizon oil release posed the challenges of two types of spill: a familiar spill characterized by buoyant oil, fouling and killing organisms at the sea surface and eventually grounding on and damaging sensitive shoreline habitats, and a novel deepwater spill involving many unknowns. The subsurface retention of...
The field performance of genetic containment technologies–considered important for certain uses of transgenic trees in forestry–is poorly known. We tested the efficiency of a barnase gene driven by the TA29 tapetum-dominant promoter for influencing growth rate and inducing male sterility in a field trial of transgenic hybrid poplar (Populus tremula × Populus...
Lithothamnion rnuelleri is reported for the first time as one of the main components of rhodolith beds along the Eastern Pacific Ocean based on samples from Washington State (USA), Pacific Baja California (Mexico), southern Nicaragua, and Costa Rica. Individual rhodoliths ranged from fruticose to lumpy in morphology, and bi-sporangial, tetrasporangial,...
Ferromagnetic resonance (FMR) characterization, using a vector network analyzer (VNA), is widely used to determine anisotropy, g-factor, and Gilbert damping parameter of magnetic thin films, but results are typically reported without calculation of the measurement accuracy. We present a method of processing VNA-FMR measurements to determine both the value and...
Myc is a pleiotropic transcription factor that is involved in many cellular activities relevant to carcinogenesis, including hepatocarcinogenesis. The zebrafish has been increasingly used to model human diseases and it is particularly valuable in helping to identify common and conserved molecular mechanisms in vertebrates. Here we generated a liver tumor...
The Critical Depth Hypothesis formalized by Sverdrup in 1953 posits that
vernal phytoplankton blooms occur when surface mixing shoals to a depth shallower than a
critical depth horizon defining the point where phytoplankton growth exceeds losses. This
hypothesis has since served as a cornerstone in plankton ecology and reflects the...
The potential effects of plant derived oils on survival of dampwood termite (Zootermopsis augusticollis) workers was explored on western white pine sapwood blocks. All of the oils rapidly affected protozoa in the hindgut of termite workers and protozoa loss was closely followed by worker mortality. The effects were most rapid...
Stomata control tree transpiration by sensing and integrating environmental signals originating in the atmosphere and soil, and co-occurring species may differ in inherent stomatal sensitivity to these above- and belowground signals and in the types of signals to which they respond. Stomatal responsiveness to environmental signals is likely to differ...
During the last glacial period atmospheric carbon dioxide and temperature in Antarctica varied in a similar fashion on millennial time scales, but previous work indicates that these changes were gradual. In a detailed analysis of one event we now find that approximately half of the CO₂ increase that occurred during...
New ice core analyses show that the prominent rise in atmospheric methane concentration at Dansgaard-Oeschger event 21 was interrupted by a century-long 20% decline, which was previously unrecognized. The reversal was found in a new ∼100-year resolution study of methane in the GISP2 ice core, encompassing the beginning of D-O...
Background:
Abscisic acid (ABA) regulates various developmental processes and stress responses over both short (i.e. hours or days) and longer (i.e. months or seasons) time frames. To elucidate the transcriptional regulation of early responses of grapevine (Vitis vinifera) responding to ABA, different organs of grape (berries, shoot tips, leaves, roots...
Corrections
18 Mar 2010: Shaman J, Pitzer VE, Viboud C, Grenfell BT, Lipsitch M (2010) Correction: Absolute Humidity and the Seasonal Onset of Influenza in the Continental United States. PLOS Biology 8(3): 10.1371/annotation/35686514-b7a9-4f65-9663-7baefc0d63c0.
15 Mar 2010: Shaman J, Pitzer VE, Viboud C, Grenfell BT, Lipsitch M (2010) Correction: Absolute Humidity...
Estimating the abundance of long-lived, migratory animals is challenging but essential
for managing populations. We provide the first abundance estimates of endangered humpback
whales Megaptera novaeangliae from their breeding grounds in Oceania, South Pacific.
Using fluke photo-identification (1999−2004, n = 660 individuals) and microsatellite genotypes
(1999−2005, n = 840 individuals),...
During 2016-2018, unprecedented aggregations of the colonial pelagic tunicate Pyrosoma atlanticum were observed in the Northern California Current (NCC). Pyrosomes are common in tropical and sub-tropical ocean waters, but little is known about their abundance, distribution, and trophic ecology in mid-latitude systems. To assess these factors, pyrosomes were collected during...
In August 2011, a cohort of 30 Oregon State University Libraries and Press librarians and staff received free e-readers (Kindle Keyboards, Nook Simple Touches, Kobo Touches, and Sony PRS-350 Reader Pocket Editions) to use and adopt as they wished. In return, they were asked to participate in a year-long study...
Adequate energy stores are essential for survival, and sophisticated neuroendocrine mechanisms evolved to stimulate foraging in response to nutrient deprivation. Food search behavior is usually investigated in young animals, and it is not known how aging alters this behavior. To address this question in Drosophila melanogaster, we compared the ability...
Background: The identification of proteins by mass spectrometry is a standard method in biopharmaceutical quality control and biochemical research. Prior to identification by mass spectrometry, proteins are usually pre-separated by electrophoresis. However, current protein staining and de-staining protocols are tedious and time consuming, and therefore prolong the sample preparation time...
The expedient design of precision components in aerospace and other high-tech industries requires simulations of physical phenomena often described by partial differential equations (PDEs) without exact solutions. Modern design problems require simulations with a level of resolution difficult to achieve in reasonable amounts of time-even in effectively parallelized solvers. Though...
In surveys of residents in three urban and three rural locations in the Great Basin we examined the social acceptability of six management practices showing promise for restoring sagebrush-dominated rangelands. Unlike most studies of range management perceptions that have relied on single measurements, we used longitudinal data from a questionnaire...
Despite the clear negative impact of high textbook costs on students, limits including space, funding, and policies prevent many academic libraries from fully supporting textbook collections. Partnering with other campus units on textbook lending requires creative thinking but can provide students access to other services in addition to the books...
Acetylene is a slow-binding inhibitor of the Ni- and Fe-containing dimeric hydrogenase isolated
from Azotobacter vinelandii. Acetylene was released from hydrogenase during the recovery from inhibition.
This indicates that no transformation of acetylene to another compound occurred as a result of the interaction
with hydrogenase. However, the release of C2H2...
The olfactory bulb contains the first synaptic relay in the olfactory pathway, the sensory system in which odorants are detected enabling these chemical stimuli to be transformed into electrical signals and, ultimately, the perception of odor. Acid-sensing ion channels (ASICs), a family of proton-gated cation channels, are widely expressed in...
Beaked whales are hypothesized to be particularly sensitive to anthropogenic noise, based on previous
strandings and limited experimental and observational data. However, few species have been studied in
detail. We describe the underwater behavior of a Baird’s beaked whale (Berardius bairdii) from the first
deployment of a multi-sensor acoustic tag...
Harbor porpoises (Phocoena phocoena) are commonly observed in Oregon's nearshore marine environment yet knowledge of their ecosystem use and behavior remains limited, generating concerns for potential impacts on this species from future coastal development. Passive acoustic monitoring was used to investigate spatial and temporal variations in the presence and foraging...
Dysregulation of Sonic hedgehog (Shh) signaling has been implicated in glioma pathogenesis. Yet, the role of this pathway in gliomagenesis remains controversial because of the lack of relevant animal models. Using the cytokeratin 5 promoter, we ectopically expressed a constitutively active zebrafish Smoothened (Smoa1) in neural progenitor cells and analyzed...
During the 2008 and 2009 breeding seasons of murres Uria spp., we combined visual observations of these predators with active acoustics (sonar), fish trawls, zooplankton net tows, and hydrographic measurements in the area surrounding breeding colonies in the southeastern Bering Sea. We acoustically detected thousands of bubble trails that were...