Index Catalog // ScholarsArchive@OSU

A genomic and proteomic characterization of the first cultured oligotrophic marine Gammaproteobacterium from the SAR92 clade

Creator:: Mellbye, Brett L.
Abstract:: High-throughput culturing (HTC) consisting of extinction culturing in autoclaved seawater has led to the isolation and characterization of many novel strains of oligotrophic marine bacteria. Strain HTCC 2207 was isolated from the Oregon coast by the HTC method. Phylogenetic analysis based on 16S rRNA gene sequence showed that this strain...
Resource Type:: Honors College Thesis
Full Text:: followed by genome sequencing and interpretation, proteomic analysis by liquid chromatography/tandem mass

Genomic Resource Development for European Hazelnut (Corylus avellana L.)

Creator:: Rowley, Erik R.
Abstract:: European hazelnut (Corylus avellana L.) is an important crop Oregon's Willamette Valley, producing 99% of the hazelnuts grown in North America and brings over US $60 million dollars to the region annually. Hazelnuts are rich in fiber and vitamins, as well in demand by consumers due to their popularity as...
Resource Type:: Dissertation
Full Text:: generation was done in the Oregon State University Center for Genome Research and Biocomputing core

Identification of quantitative trait loci underlying kernel extra-softness and related traits by linkage and association mapping in wheat (Triticum aestivum L.)

Creator:: Wang, Guomei
Abstract:: Kernel hardness (KHA) is a major factor determining break flour yield (BFY) and end-use quality of common wheat (Triticum aestivum L.). Within the soft wheat class, genotypes with consistently softer grains than common soft wheat are considered to be 'extra-soft'. In addition, 'extra-soft' wheats have greater BFY than common soft...
Resource Type:: Dissertation
Full Text:: spirit of adventure in regard to research and scholarship, and an excitement in regard to teaching, for

Comparative Genomics of Freshwater Bloom-Forming Cyanobacteria and Associated Organisms

Creator:: Driscoll, Connor B.
Abstract:: The advent of improved DNA sequencing technologies has allowed the analysis of various microbial communities. Bloom-forming freshwater cyanobacteria can produce toxins and taste-and-odor compounds that can negatively affect drinking water supplies. Here, I have employed second- and third-generation sequencing technologies to characterize bloom-forming freshwater cyanobacterial genomes and their associated heterotrophic...
Resource Type:: Dissertation
Full Text:: series to assess detectable genome variants within the same environment. Together, this research

The genetics of winterhardiness in barley : perspectives from genome-wide association mapping

Creator:: von Zitzewitz, Jarislav
Abstract:: Fall-planted barley makes the best use of available precipitation in the Pacific Northwest of the United States. This growth habit is also suitable to many other areas of the world. A prerequisite for production in most of these areas is tolerance of low temperature during the vegetative growth stages. Fall-planted...
Resource Type:: Dissertation
Full Text:: research, we explored the genetics of winterhardiness in barley germplasm through genome-wide association

Sequencing the Mitochondrial Genome of the Common Milkweed: Asclepias syriaca

Creator:: Edwards, Christopher A.
Abstract:: Few plant mitochondrial genomes have been published to date because of their structural complexity and difficulties in their physical isolation. Plant mitochondrial genomes are known to have a high level of heteroplasmy and can exist as several different circular or linear strands. Sequencing additional mitochondrial genomes will help to understand...
Resource Type:: Honors College Thesis
Full Text::  comparative   genomics." Genome research 19.9 (2009): 1639‐1645.    Kubo, Tomohiko, and Tetsuo Mikami

Alternative splicing in the obligate biotrophic oomycete pathogen, Pseudoperonospora cubensis

Creator:: Cumbie, Jason S.
Abstract:: Oomycetes are some of the most devastating pathogens, causing upwards of billions of dollars of damage each year to plants. They also diminish ecological diversity and health through the destruction of trees and shrubs. The genome sequence of Pseudoperonospora cubensis, an obligate plant pathogen and causative agent of downy mildew...
Resource Type:: Dissertation
Full Text:: through the destruction of trees and shrubs. The genome sequence of Pseudoperonospora cubensis, an

Simple sequence repeat marker development and use in European hazelnut (Corylus avellana L.)

Creator:: Gürcan, Kahraman
Abstract:: New highly polymorphic simple sequence repeat (SSR) markers for European hazelnut (Corylus avellana L.). were developed from several sources. The markers were characterized, and segregation in a mapping population allowed to assign them to linkage groups. Their transferability across genera and species in the Betulaceae family was investigated. SSR markers...
Resource Type:: Dissertation
Full Text:: Research Assistant David Smith whom I admire for being an eco-friendly, humanist and helpful person, and

Creating High Throughput Low Cost Analysis of Different Labor-Intensive Repetitive Research Processes

Creator:: Sullivan, Christopher M.
Abstract:: Many research projects suffer from limited data causing poor statistical analysis or limited results. The movement to high throughput methods has been building for many years and cross many different disciplines. Lots of these methods start out using pathways that generate large amounts of data but have limited methods to...
Resource Type:: Masters Thesis
Full Text:: to the Center for Genome Research and Biocomputing for all the computational resources. The author

De novo Discovery of Novel Long Noncoding RNAs in the North American Beaver

Creator:: Kashyap, Amita
Abstract:: Long noncoding RNAs (lncRNAs) are RNA molecules that are at least 200 nucleotides long and do not encode proteins. lncRNAs have roles in gene regulation, chromatin epigenetics, and molecular scaffolding. In light of mounting evidence implicating species-specific noncoding RNAs and gene regulatory mechanisms in species adaptations, it is reasonable to...
Resource Type:: Honors College Thesis
Full Text:: Research, College of Agricultural Sciences 2Center for Genome Research and Biocomputing 3Department of

ScholarsArchive@OSU

A genomic and proteomic characterization of the first cultured oligotrophic marine Gammaproteobacterium from the SAR92 clade

Genomic Resource Development for European Hazelnut (Corylus avellana L.)

Identification of quantitative trait loci underlying kernel extra-softness and related traits by linkage and association mapping in wheat (Triticum aestivum L.)

Comparative Genomics of Freshwater Bloom-Forming Cyanobacteria and Associated Organisms

The genetics of winterhardiness in barley : perspectives from genome-wide association mapping

Sequencing the Mitochondrial Genome of the Common Milkweed: Asclepias syriaca

Alternative splicing in the obligate biotrophic oomycete pathogen, Pseudoperonospora cubensis

Simple sequence repeat marker development and use in European hazelnut (Corylus avellana L.)

Creating High Throughput Low Cost Analysis of Different Labor-Intensive Repetitive Research Processes

De novo Discovery of Novel Long Noncoding RNAs in the North American Beaver

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