Index Catalog // ScholarsArchive@OSU

An update to the Surface Ocean CO₂ Atlas (SOCAT version 2)

Creator:: Bakker, D. C. E., Pfeil, B., Smith, K., Hankin, S., Olsen, A., Alin, S. R., Cosca, C., Harasawa, S., Kozyr, A., Nojiri, Y., O'Brien, K. M., Schuster, U., Telszewski, M., Tilbrook, B., Wada, C., Akl, J., Barbero, L., Bates, N. R., Boutin, J., Bozec, Y., Cai, W.-J., Castle, R. D., Chavez, F. P., Chen, L., Chierici, M., Currie, K., de Baar, H. J. W., Evans, W., Feely, R. A., Fransson, A., Gao, Z., Hales, B., Hardman-Mountford, N. J., Hoppema, M., Huang, W.-J., Hunt, C. W., Huss, B., Ichikawa, T., Johannessen, T., Jones, E. M., Jones, S. D., Jutterström, S., Kitidis, V., Körtzinger, A., Landschützer, P., Lauvset, S. K., Lefèvre, N., Manke, A. B., Mathis, J. T., Merlivat, L., Metzl, N., Murata, A., Newberger, T., Omar, A. M., Ono, T., Park, G.-H., Paterson, K., Pierrot, D., Ríos, A. F., Sabine, C. L., Saito, S., Salisbury, J., Sarma, V. V. S. S., Schlitzer, R., Sieger, R., Skjelvan, I., Steinhoff, T., Sullivan, K. F., Sun, H., Sutton, A. J., Suzuki, T., Sweeney, C., Takahashi, T., Tjiputra, J., Tsurushima, N., van Heuven, S. M. A. C., Vandemark, D., Vlahos, P., Wallace, D. W. R., Wanninkhof, R., and Watson, A. J.
Abstract:: The Surface Ocean CO2 Atlas (SOCAT), an activity of the international marine carbon research community, provides access to synthesis and gridded fCO2 (fugacity of carbon dioxide) products for the surface oceans. Version 2 of SOCAT is an update of the previous release (version 1) with more data (increased from 6.3...
Resource Type:: Article
Full Text:: , A., Pfeil, B., Smith, K., Alin, S. R., ... & Murata, A. (2014). An update to the Surface Ocean CO

Selenium Supplementation Restores Innate and Humoral Immune Responses in Footrot-Affected Sheep

Creator:: Hall, Jean A., Vorachek, William R., Stewart, Whitney C., Gorman, M. Elena, Mosher, Wayne D., Pirelli, Gene J., and Bobe, Gerd
Abstract:: Dietary selenium (Se) alters whole-blood Se concentrations in sheep, dependent upon Se source and dosage administered, but little is known about effects on immune function. We used footrot (FR) as a disease model to test the effects of supranutritional Se supplementation on immune function. To determine the effect of Se-source...
Resource Type:: Article
Full Text:: and Humoral Immune Responses in Footrot-Affected Sheep Jean A. Hall1*, William R. Vorachek1, Whitney C

Effect of Feeding Selenium-Fertilized Alfalfa Hay on Performance of Weaned Beef Calves

Creator:: Hall, Jean A., Bobe, Gerd, Hunter, Janice K., Vorachek, William R., Stewart, Whitney C., Vanegas, Jorge A., Estill, Charles T., Mosher, Wayne D., and Pirelli, Gene J.
Abstract:: Selenium (Se) is an essential micronutrient in cattle, and Se-deficiency can affect morbidity and mortality. Calves may have greater Se requirements during periods of stress, such as during the transitional period between weaning and movement to a feedlot. Previously, we showed that feeding Se-fertilized forage increases whole-blood (WB) Se concentrations...
Resource Type:: Article
Full Text:: , William R. Vorachek1, Whitney C. Stewart2¤b, Jorge A. Vanegas4, Charles T. Estill2,4, Wayne D. Mosher2

Astragaloside IV Inhibits NF-κB Activation and Inflammatory Gene Expression in LPS-Treated Mice

Creator:: Zhang, Wei-Jian and Frei, Balz
Abstract:: In this study we investigated the role of astragaloside IV (AS-IV), one of the major active constituents purified from the Chinese medicinal herb Astragalus membranaceus, in LPS-induced acute inflammatory responses in mice in vivo and examined possible underlying mechanisms. Mice were assigned to four groups: vehicle-treated control animals; AS-IV-treated animals...
Resource Type:: Article
Full Text:: . 2, pp. 184–193, 2008. [17] X.-H. Gao, X.-X. Xu, R. Pan et al., “Saponin fraction fromAstra- galus

Length Bias Correction in Gene Ontology Enrichment Analysis Using Logistic Regression

Creator:: Mi, Gu, Di, Yanming, Emerson, Sarah, Cumbie, Jason S., and Chang, Jeff H.
Abstract:: When assessing differential gene expression from RNA sequencing data, commonly used statistical tests tend to have greater power to detect differential expression of genes encoding longer transcripts. This phenomenon, called "length bias", will influence subsequent analyses such as Gene Ontology enrichment analysis. In the presence of length bias, Gene Ontology...
Resource Type:: Article
Full Text:: Bioconductor package goseq. Gao et al. proposed a similar method where a different weighting function is used

Endosperm Tolerance of Paternal Aneuploidy Allows Radiation Hybrid Mapping of the Wheat D-Genome and a Measure of γ Ray-Induced Chromosome Breaks

Creator:: Tiwari, Vijay K., Riera-Lizarazu, Oscar, Gunn, Hilary L., Lopez, KaSandra, Iqbal, M. Javed, Kianian, Shahryar F., and Leonard, Jeffrey M.
Abstract:: Physical mapping and genome sequencing are underway for the ≈17 Gb wheat genome. Physical mapping methods independent of meiotic recombination, such as radiation hybrid (RH) mapping, will aid precise anchoring of BAC contigs in the large regions of suppressed recombination in Triticeae genomes. Reports of endosperm development following pollination with...
Resource Type:: Article
Full Text:: of pollen irradiation was utilized for RH mapping in plants by Gao et al. [19]. They reported a wide

The plant phenology monitoring design for The National Ecological Observatory Network

Creator:: Elmendorf, Sarah C., Jones, Katherine D., Cook, Benjamin I., Diez, Jeffrey M., Enquist, Carolyn A. F., Hufft, Rebecca A., Jones, Matthew O., Mazer, Susan J., Miller-Rushing, Abraham J., Moore, David J. P., Schwartz, Mark D., and Weltzin, Jake F.
Abstract:: Phenology is an integrative science that comprises the study of recurring biological activities or events. In an era of rapidly changing climate, the relationship between the timing of those events and environmental cues such as temperature, snowmelt, water availability, or day length are of particular interest. This article provides an...
Resource Type:: Article
Full Text:: : Elmendorf, S. C., K. D. Jones, B. I. Cook, J. M. Diez, C. A. F. Enquist, R. A. Hufft, M. O. Jones, S. J

Simulated Evolution of Protein-Protein Interaction Networks with Realistic Topology

Creator:: Peterson, G. Jack, Pressé, Steve, Peterson, Kristin S., and Dill, Ken A.
Abstract:: We model the evolution of eukaryotic protein-protein interaction (PPI) networks. In our model, PPI networks evolve by two known biological mechanisms: (1) Gene duplication, which is followed by rapid diversification of duplicate interactions. (2) Neofunctionalization, in which a mutation leads to a new interaction with some other protein. Since many...
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Full Text:: –441. 2. Cirz R, Chin J, Andes D, de Crécy-Lagard V, Craig W, et al. (2005) Inhibition of mutation

Mutualistic Co-evolution of Type III Effector Genes in Sinorhizobium fredii and Bradyrhizobium japonicum

Creator:: Kimbrel, Jeffrey A., Thomas, William J., Jiang, Yuan, Creason, Allison L., Thireault, Caitlin A., Sachs, Joel L., and Chang, Jeff H.
Abstract:: Two diametric paradigms have been proposed to model the molecular co-evolution of microbial mutualists and their eukaryotic hosts. In one, mutualist and host exhibit an antagonistic arms race and each partner evolves rapidly to maximize their own fitness from the interaction at potential expense of the other. In the opposing...
Resource Type:: Article
Full Text:: defense is effector-triggered immunity (ETI) in which resistance (R) proteins surveil for corresponding

How Effective Are DNA Barcodes in the Identification of African Rainforest Trees?

Creator:: Parmentier, Ingrid, Duminil, Jérôme, Kuzmina, Maria, Philippe, Morgane, Thomas, Duncan W., Kenfack, David, Chuyong, George B., Cruaud, Corinne, and Hardy, Olivier J.
Abstract:: Background: DNA barcoding of rain forest trees could potentially help biologists identify species and discover new ones. However, DNA barcodes cannot always distinguish between closely related species, and the size and completeness of barcode databases are key parameters for their successful application. We test the ability of rbcL, matK and...
Resource Type:: Article
Full Text:: an ra in fo re st tr e e s at a lo ca l sc al e fo r sp e ci e s id e n ti fi ca ti o n (a ) an

ScholarsArchive@OSU

An update to the Surface Ocean CO₂ Atlas (SOCAT version 2)

Selenium Supplementation Restores Innate and Humoral Immune Responses in Footrot-Affected Sheep

Effect of Feeding Selenium-Fertilized Alfalfa Hay on Performance of Weaned Beef Calves

Astragaloside IV Inhibits NF-κB Activation and Inflammatory Gene Expression in LPS-Treated Mice

Length Bias Correction in Gene Ontology Enrichment Analysis Using Logistic Regression

Endosperm Tolerance of Paternal Aneuploidy Allows Radiation Hybrid Mapping of the Wheat D-Genome and a Measure of γ Ray-Induced Chromosome Breaks

The plant phenology monitoring design for The National Ecological Observatory Network

Simulated Evolution of Protein-Protein Interaction Networks with Realistic Topology

Mutualistic Co-evolution of Type III Effector Genes in Sinorhizobium fredii and Bradyrhizobium japonicum

How Effective Are DNA Barcodes in the Identification of African Rainforest Trees?

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