Index Catalog // ScholarsArchive@OSU

The Genome of Tolypocladium inflatum: Evolution, Organization, and Expression of the Cyclosporin Biosynthetic Gene Cluster

Creator:: Bushley, Kathryn E., Raja, Rajani, Jaiswal, Pankaj, Cumbie, Jason S., Nonogaki, Mariko, Boyd, Alexander E., Owensby, C. Alisha, Knaus, Brian J., Elser, Justin, Miller, Daniel, Di, Yanming, McPhail, Kerry L., and Spatafora, Joseph W.
Abstract:: The ascomycete fungus Tolypocladium inflatum, a pathogen of beetle larvae, is best known as the producer of the immunosuppressant drug cyclosporin. The draft genome of T. inflatum strain NRRL 8044 (ATCC 34921), the isolate from which cyclosporin was first isolated, is presented along with comparative analyses of the biosynthesis of...
Resource Type:: Article
Full Text:: addition to cyclosporins, T. inflatum synthesizes a number of other products via both NRPSs and polyketide

The Generation Challenge Programme Platform: Semantic Standards and Workbench for Crop Science

Creator:: Bruskiewich, Richard, Senger, Martin, Davenport, Guy, Ruiz, Manuel, Rouard, Mathieu, Hazekamp, Tom, Takeya, Masaru, Doi, Koji, Satoh, Kouji, Costa, Marcos, Simon, Reinhard, Balaji, Jayashree, Akintunde, Akinnola, Mauleon, Ramil, Wanchana, Samart, Shah, Trushar, Anacleto, Mylah, Portugal, Arllet, Ulat, Victor Jun, Thongjuea, Supat, Braak, Kyle, Ritter, Sebastian, Dereeper, Alexis, Skofic, Milko, Rojas, Edwin, Martins, Natalia, Pappas, Georgios, Alamban, Ryan, Almodiel, Roque, Barboza, Lord Hendrix, Detras, Jeffrey, Manansala, Kevin, Mendoza, Michael Jonathan, Morales, Jeffrey, Peralta, Barry, Valerio, Rowena, Zhang, Yi, Gregorio, Sergio, Hermocilla, Joseph, Echavez, Michael, Yap, Jan Michael, Farmer, Andrew, Schiltz, Gary, Lee, Jennifer, Casstevens, Terry, Jaiswal, Pankaj, Meintjes, Ayton, Wilkinson, Mark, Good, Benjamin, Wagner, James, Morris, Jane, Marshall, David, Collins, Anthony, Kikuchi, Shoshi, Metz, Thomas, McLaren, Graham, and van Hintum, Theo
Abstract:: The Generation Challenge programme (GCP) is a global crop research consortium directed toward crop improvement through the application of comparative biology and genetic resources characterization to plant breeding. A key consortium research activity is the development of a GCP crop bioinformatics platform to support GCP research. This platform includes the...
Resource Type:: Article
Full Text:: index number to facilitate platform management of the ontology. Where an existing public ontology

An update to the Surface Ocean CO₂ Atlas (SOCAT version 2)

Creator:: Bakker, D. C. E., Pfeil, B., Smith, K., Hankin, S., Olsen, A., Alin, S. R., Cosca, C., Harasawa, S., Kozyr, A., Nojiri, Y., O'Brien, K. M., Schuster, U., Telszewski, M., Tilbrook, B., Wada, C., Akl, J., Barbero, L., Bates, N. R., Boutin, J., Bozec, Y., Cai, W.-J., Castle, R. D., Chavez, F. P., Chen, L., Chierici, M., Currie, K., de Baar, H. J. W., Evans, W., Feely, R. A., Fransson, A., Gao, Z., Hales, B., Hardman-Mountford, N. J., Hoppema, M., Huang, W.-J., Hunt, C. W., Huss, B., Ichikawa, T., Johannessen, T., Jones, E. M., Jones, S. D., Jutterström, S., Kitidis, V., Körtzinger, A., Landschützer, P., Lauvset, S. K., Lefèvre, N., Manke, A. B., Mathis, J. T., Merlivat, L., Metzl, N., Murata, A., Newberger, T., Omar, A. M., Ono, T., Park, G.-H., Paterson, K., Pierrot, D., Ríos, A. F., Sabine, C. L., Saito, S., Salisbury, J., Sarma, V. V. S. S., Schlitzer, R., Sieger, R., Skjelvan, I., Steinhoff, T., Sullivan, K. F., Sun, H., Sutton, A. J., Suzuki, T., Sweeney, C., Takahashi, T., Tjiputra, J., Tsurushima, N., van Heuven, S. M. A. C., Vandemark, D., Vlahos, P., Wallace, D. W. R., Wanninkhof, R., and Watson, A. J.
Abstract:: The Surface Ocean CO2 Atlas (SOCAT), an activity of the international marine carbon research community, provides access to synthesis and gridded fCO2 (fugacity of carbon dioxide) products for the surface oceans. Version 2 of SOCAT is an update of the previous release (version 1) with more data (increased from 6.3...
Resource Type:: Article
Full Text:: . The number of CO2 mea- surements has greatly increased over the past four decades (Fig. 1) (Sabine et

Evaluating testcross performance and genetic divergence of lines derived from reciprocal tropical maize composites

Creator:: Menkir, Abebe, Kling, Jennifer G., Anjorin, Bamyo, Ladejobi, Funmilayo, and Gedil, Melaku
Abstract:: The development of hybrids with enhanced expression of heterosis depends on the genetic background of the source population and the effectiveness of a breeding scheme used to identify and use divergent inbred lines with good combining ability. The present study was conducted to examine the potential of improved tropical reciprocal...
Resource Type:: Article
Full Text:: crossed in pairs to form 36 testcrosses, which were evaluated along with com- monly grown commercial

Predation on an Upper Trophic Marine Predator, the Steller Sea Lion: Evaluating High Juvenile Mortality in a Density Dependent Conceptual Framework

Creator:: Horning, Markus and Mellish, Jo-Ann E.
Abstract:: The endangered western stock of the Steller sea lion (Eumetopias jubatus) - the largest of the eared seals - has declined by 80% from population levels encountered four decades ago. Current overall trends from the Gulf of Alaska to the Aleutian Islands appear neutral with strong regional heterogeneities. A published...
Resource Type:: Article
Full Text:: received post-mortem via satellite from telemetry transmitters implanted into 36 juvenile Steller sea lions

Farm Zoning and Fairness in Oregon 1964 - 2014

Creator:: Richmond, Henry R. and Houchen, Timothy G.
Abstract:: Senate Bill 100 (1973) and the Oregon Land Conservation and Development Commission’s (LCDC) goals (1975) required: - Cities to adopt urban growth boundaries (UGBs) to contain sprawl, and - Counties to use zoning to limit 15.6 million acres of farmland to farm use, and 8.0 million acres of forest land...
Resource Type:: Technical Report
Full Text:: Market Value Growth v. S & P 500 Index Growth, 1964 - 2012, Eastern Oregon (COA) 36 12 Farmland

A dual isotope approach to isolate soil carbon pools of different turnover times

Creator:: Torn, M. S., Kleber, M., Zavaleta, E. S., Zhu, B., Field, C. B., and Trumbore, S. E.
Abstract:: Soils are globally significant sources and sinks of atmospheric CO₂. Increasing the resolution of soil carbon turnover estimates is important for predicting the response of soil carbon cycling to environmental change. We show that soil carbon turnover times can be more finely resolved using a dual isotope label like the...
Resource Type:: Article
Full Text:: 36–79 % slow cycling with turnover slower than 100 yr. This validates model treatment of the light

Non-Invasive Sampling of Schistosomes from Humans Requires Correcting for Family Structure

Creator:: Steinauer, Michelle L., Christie, Mark R., Blouin, Michael S., Agola, Lelo E., Mwangi, Ibrahim N., Maina, Geoffrey M., Mutuku, Martin W., Kinuthia, Joseph M., Mkoji, Gerald M., and Loker, Eric S.
Abstract:: For ethical and logistical reasons, population-genetic studies of parasites often rely on the non-invasive sampling of offspring shed from their definitive hosts. However, if the sampled offspring are naturally derived from a small number of parents, then the strong family structure can result in biased population-level estimates of genetic parameters,...
Resource Type:: Article
Full Text:: definitive hosts. However, if the sampled offspring are naturally derived from a small number of parents

Assessing Research Data Management Practices of Faculty at Carnegie Mellon University

Creator:: Van Tuyl, Steve, Michalek, Gabrielle, and Van Tuyl, Steven
Abstract:: INTRODUCTION: Recent changes to requirements for research data management by federal granting agencies and by other funding institutions have resulted in the emergence of institutional support for these requirements. At CMU, we sought to formalize assessment of research data management practices of researchers at the institution by launching a faculty...
Resource Type:: Article
Full Text:: practices of researchers at the institution by launching a faculty survey and conducting a number of

High-Density SNP Genotyping of Tomato (Solanum lycopersicum L.) Reveals Patterns of Genetic Variation Due to Breeding

Creator:: Sim, Sung-Chur, Van Deynze, Allen, Stoffel, Kevin, Douches, David S., Zarka, Daniel, Ganal, Martin W., Chetelat, Roger T., Hutton, Samuel F., Scott, John W., Gardner, Randolph G., Panthee, Dilip R., Mutschler, Martha, Myers, James R., and Francis, David M.
Abstract:: The effects of selection on genome variation were investigated and visualized in tomato using a high-density single nucleotide polymorphism (SNP) array. 7,720 SNPs were genotyped on a collection of 426 tomato accessions (410 inbreds and 16 hybrids) and over 97% of the markers were polymorphic in the entire collection. Principal...
Resource Type:: Article
Full Text:: vintage sub-population. The array provided a large number of polymorphic SNP markers across each sub

ScholarsArchive@OSU

The Genome of Tolypocladium inflatum: Evolution, Organization, and Expression of the Cyclosporin Biosynthetic Gene Cluster

The Generation Challenge Programme Platform: Semantic Standards and Workbench for Crop Science

An update to the Surface Ocean CO₂ Atlas (SOCAT version 2)

Evaluating testcross performance and genetic divergence of lines derived from reciprocal tropical maize composites

Predation on an Upper Trophic Marine Predator, the Steller Sea Lion: Evaluating High Juvenile Mortality in a Density Dependent Conceptual Framework

Farm Zoning and Fairness in Oregon 1964 - 2014

A dual isotope approach to isolate soil carbon pools of different turnover times

Non-Invasive Sampling of Schistosomes from Humans Requires Correcting for Family Structure

Assessing Research Data Management Practices of Faculty at Carnegie Mellon University

High-Density SNP Genotyping of Tomato (Solanum lycopersicum L.) Reveals Patterns of Genetic Variation Due to Breeding

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