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Integrated Landscape Assessment Project final report

Creator:: Gaines, Lisa, Hemstrom, Miles, Kagan, Jimmy, and Salwasser, Janine
Abstract:: The Integrated Landscape Assessment Project (ILAP) was a multi-year effort to produce information, maps, and models to help land managers, policy-makers, and others conduct mid- to broad-scale (e.g., watersheds to states and larger areas) prioritization of land management actions, perform landscape assessments, and estimate cumulative effects of management actions for...
Resource Type:: Technical Report
Full Text:: ) Lisa Gaines Miles Hemstrom Jimmy Kagan Janine Salwasser Edited by Julie Bain Prepared by

Data and Code for: The role of maternal age and context-dependent maternal effects in the offspring provisioning of a long-lived marine teleost

Creator:: Arnold, Linsey, Smith, Wade, Spencer, Paul, Evans, Allison, Heppell, Scott, and Heppell, Selina
Resource Type:: Dataset

Differences in Adélie Penguin (Pygoscelis adeliae) Chick Growth Rates and Diet

Creator:: Jennings, Scott, Varsani, Arvind, Dugger, Katie M., Ballard, Grant, and Ainley, David G.
Abstract:: Sexually size-dimorphic species must show some difference between the sexes in growth rate and/or length of growing period. Such differences in growth parameters can cause the sexes to be impacted by environmental variability in different ways, and understanding these differences allows a better understanding of patterns in productivity between individuals...
Resource Type:: Article
Full Text:: adeliae) Chick Growth Rates and Diet Scott Jennings1*, Arvind Varsani2,3,4, Katie M. Dugger5, Grant

ARK: Aggregation of Reads by K-Means for Estimation of Bacterial Community Composition

Creator:: Koslicki, David, Chatterjee, Saikat, Shahrivar, Damon, Walker, Alan W., Francis, Suzanna C., Fraser, Louise J., Vehkaperä, Mikko, Lan, Yueheng, and Corander, Jukka
Abstract:: Motivation: Estimation of bacterial community composition from high-throughput sequenced 16S rRNA gene amplicons is a key task in microbial ecology. Since the sequence data from each sample typically consist of a large number of reads and are adversely impacted by different levels of biological and technical noise, accurate analysis of...
Resource Type:: Article
Full Text:: Community Composition Koslicki, D., Chatterjee, S., Shahrivar, D., Walker, A. W., Francis, S. C., Fraser, L

The Fishery Performance Indicators: A Management Tool for Triple Bottom Line Outcomes

Creator:: Anderson, James L., Anderson, Christopher M., Chu, Jingjie, Meredith, Jennifer, Asche, Frank, Sylvia, Gil, Smith, Martin D., Anggraeini, Dessy, Arthur, Robert, Guttormsen, Atle, McCluney, Jessica K., Ward, Tim, Akpalu, Wisdom, Eggert, Håkan, Flores, Jimely, Freeman, Matthew A., Holland, Daniel S., Knapp, Gunnar, Kobayashi, Mimako, Larkin, Sherry, MacLauchlin, Karl, Shnier, Kurt, Soboli, Mark, Tveteras, Sigbjorn, Uchida, Hirotsugu, and Valderrama, Diego
Abstract:: Pursuit of the triple bottom line of economic, community and ecological sustainability has increased the complexity of fishery management; fisheries assessments require new types of data and analysis to guide science-based policy in addition to traditional biological information and modeling. We introduce the Fishery Performance Indicators (FPIs), a broadly applicable...
Resource Type:: Article
Full Text:: The Fishery Performance Indicators: A Management Tool for

Assessing the Health of the U.S. West Coast with a Regional-Scale Application of the Ocean Health Index

Creator:: Halpern, Benjamin S., Longo, Catherine, Scarborough, Courtney, Hardy, Darren, Best, Benjamin D., Doney, Scott C., Katona, Steven K., McLeod, Karen L., Rosenberg, Andrew A., and Samhouri, Jameal F.
Abstract:: Management of marine ecosystems increasingly demands comprehensive and quantitative assessments of ocean health, but lacks a tool to do so. We applied the recently developed Ocean Health Index to assess ocean health in the relatively data-rich US west coast region. The overall region scored 71 out of 100, with sub-regions...
Resource Type:: Article

Analysis of Genome Sequences from Plant Pathogenic Rhodococcus Reveals Genetic Novelties in Virulence Loci

Creator:: Creason, Allison L., Vandeputte, Olivier M., Savory, Elizabeth A., Davis, Edward W., II, Putnam, Melodie L., Hu, Erdong, Swader-Hines, David, Mol, Adeline, Baucher, Marie, Prinsen, Els, Zdanowska, Magdalena, Givan, Scott A., El Jaziri, Mondher, Loper, Joyce E., Mahmud, Taifo, and Chang, Jeff H.
Abstract:: Members of Gram-positive Actinobacteria cause economically important diseases to plants. Within the Rhodococcus genus, some members can cause growth deformities and persist as pathogens on a wide range of host plants. The current model predicts that phytopathogenic isolates require a cluster of three loci present on a linear plasmid, with...
Resource Type:: Article

Analysis of genome sequences from plant pathogenic Rhodococcus reveals genetic novelties in virulence loci

Creator:: Creason, Allison L., Vandeputte, Olivier M., Savory, Elizabeth A., Davis II, Edward W., Putnam, Melodie L., Hu, Erdong, Swader-Hines, David, Mol, Adeline, Baucher, Marie, Prinsen, Els, Zdanowska, Magdalena, Givan, Scott A., El Jaziri, Mondher, Loper, Joyce E., Mahmud, Taifo, and Chang, Jeff H.
Abstract:: We report the sequence and characterization of the genomes of 21 isolates of Rhodococcus. Next generation sequencing technology was used to generate genome sequences. The reads for each genome were de novo assembled. The contigs were re-ordered, using the genome sequence of A44a as a reference. The program, Prokka, was...
Resource Type:: Dataset

Comparative Genomics of Plant-Associated Pseudomonas spp.: Insights into Diversity and Inheritance of Traits Involved in Multitrophic Interactions

Creator:: Loper, Joyce E., Hassan, Karl A., Mavrodi, Dmitri V., Davis, Edward W., II, Lim, Chee Kent, Shaffer, Brenda T., Elbourne, Liam D. H., Stockwell, Virginia O., Hartney, Sierra L., Breakwell, Katy, Henkels, Marcella D., Tetu, Sasha G., Rangel, Lorena I., Kidarsa, Teresa A., Wilson, Neil L., van de Mortel, Judith E., Song, Chunxu, Blumhagen, Rachel, Radune, Diana, Hostetler, Jessica B., Brinkac, Lauren M., Durkin, A. Scott, Kluepfel, Daniel A., Wechter, W. Patrick, Anderson, Anne J., Kim, Young Cheol, Pierson, Leland S., III, Pierson, Elizabeth A., Lindow, Steven E., Kobayashi, Donald Y., Raaijmakers, Jos M., Weller, David M., Thomashow, Linda S., Allen, Andrew E., and Paulsen, Ian T.
Abstract:: We provide here a comparative genome analysis of ten strains within the Pseudomonas fluorescens group including seven new genomic sequences. These strains exhibit a diverse spectrum of traits involved in biological control and other multitrophic interactions with plants, microbes, and insects. Multilocus sequence analysis placed the strains in three sub-clades,...
Resource Type:: Article
Full Text:: , Chunxu Song5, Rachel Blumhagen1, Diana Radune6, Jessica B. Hostetler6, Lauren M. Brinkac6, A. Scott

Forestry

Creator:: Avery, Bonnie E.
Abstract:: A broad definition of forestry would be the study of trees, forests, and their use by people. Modern science-based forestry is thought to have begun in the nineteenth century when Europeans looked to specialists to address questions of wood supply and extraction both in their forests at home and in...
Resource Type:: Part of Book
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ScholarsArchive@OSU

Integrated Landscape Assessment Project final report

Data and Code for: The role of maternal age and context-dependent maternal effects in the offspring provisioning of a long-lived marine teleost

Differences in Adélie Penguin (Pygoscelis adeliae) Chick Growth Rates and Diet

ARK: Aggregation of Reads by K-Means for Estimation of Bacterial Community Composition

The Fishery Performance Indicators: A Management Tool for Triple Bottom Line Outcomes

Assessing the Health of the U.S. West Coast with a Regional-Scale Application of the Ocean Health Index

Analysis of Genome Sequences from Plant Pathogenic Rhodococcus Reveals Genetic Novelties in Virulence Loci

Analysis of genome sequences from plant pathogenic Rhodococcus reveals genetic novelties in virulence loci

Comparative Genomics of Plant-Associated Pseudomonas spp.: Insights into Diversity and Inheritance of Traits Involved in Multitrophic Interactions

Forestry

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