Index Catalog // ScholarsArchive@OSU

The development of broad-spectrum antiviral medical countermeasures to treat viral hemorrhagic fevers caused by natural or weaponized virus infections

Creator:: Hickman, Mark R., Saunders, David L., Bigger, Catherine A., Kane, Christopher D., and Iversen, Patrick L.
Abstract:: The Joint Program Executive Office for Chemical, Biological, Radiological, and Nuclear Defense (JPEO-CBRND) began development of a broad-spectrum antiviral countermeasure against deliberate use of high-consequence viral hemorrhagic fevers (VHFs) in 2016. The effort featured comprehensive preclinical research, including laboratory testing and rapid advancement of lead molecules into nonhuman primate (NHP)...
Resource Type:: Article
Full Text:: natural or weaponized virus infections Mark R. HickmanID 1*, David L. Saunders2, Catherine A. Bigger3

Phytoplankton in Upper Willamette Reservoirs Dataset

Creator:: Murphy, Christina A., Pollock, Amanda M. M., Arismendi, Ivan, and Johnson, Sherri L.
Abstract:: Phytoplankton samples were collected from 5 upper Willamette Basin reservoirs in variable months during years 2013-2016 and 2019. Samples were collected from Blue River Reservoir, Cougar Reservoir, Fall Creek Reservoir, Lookout Point Reservoir, and Hills Creek Reservoir. The phytoplankton were identified and enumerated by Jim Sweet at Aquatic Analysts. Density...
Resource Type:: Dataset

Supplemental data to "Casting a broader net: Using microfluidic metagenomics to capture aquatic biodiversity data from diverse taxonomic targets"

Creator:: Hauck, Laura L., Weitemier, Kevin A., Penaluna, Brooke E., Garcia, Tiffany, and Cronn, Richard
Abstract:: This dataset contains the taxonomic classifications of environmental DNA (eDNA) sequences obtained from Fall Creek, Oregon, via microfluidic multiplex PCR (Fluidigm Access Array) and high-throughput sequencing. It is accompanied by electrofishing counts taken at the same time as the eDNA samples. Metadata and R scripts are provided to analyze the...
Resource Type:: Dataset

Genomic sequencing and transposon mutagenesis of a biocontrol strain of Burkholderia seminalis identify genes essential to suppression of orchid necrosis caused by B. gladioli

Creator:: Araújo, Welington L., Creason, Allison L., Mano, Emy T., Neves, Aline A. C., Minami, Sonia N., Chang, Jeff H., and Loper, Joyce E.
Abstract:: 36 strains of Burkholderia spp. isolated from sugarcane were evaluated for biological control of leaf and pseudobulb necrosis of orchid caused by B. gladioli. 29 of the sugarcane strains suppressed the disease in greenhouse assays. We generated a draft genomic sequence of one suppressive strain, B. seminalis TC3.4.2R3. The genome...
Resource Type:: Dataset

Assessing the Health of the U.S. West Coast with a Regional-Scale Application of the Ocean Health Index

Creator:: Halpern, Benjamin S., Longo, Catherine, Scarborough, Courtney, Hardy, Darren, Best, Benjamin D., Doney, Scott C., Katona, Steven K., McLeod, Karen L., Rosenberg, Andrew A., and Samhouri, Jameal F.
Abstract:: Management of marine ecosystems increasingly demands comprehensive and quantitative assessments of ocean health, but lacks a tool to do so. We applied the recently developed Ocean Health Index to assess ocean health in the relatively data-rich US west coast region. The overall region scored 71 out of 100, with sub-regions...
Resource Type:: Article

Analysis of Genome Sequences from Plant Pathogenic Rhodococcus Reveals Genetic Novelties in Virulence Loci

Creator:: Creason, Allison L., Vandeputte, Olivier M., Savory, Elizabeth A., Davis, Edward W., II, Putnam, Melodie L., Hu, Erdong, Swader-Hines, David, Mol, Adeline, Baucher, Marie, Prinsen, Els, Zdanowska, Magdalena, Givan, Scott A., El Jaziri, Mondher, Loper, Joyce E., Mahmud, Taifo, and Chang, Jeff H.
Abstract:: Members of Gram-positive Actinobacteria cause economically important diseases to plants. Within the Rhodococcus genus, some members can cause growth deformities and persist as pathogens on a wide range of host plants. The current model predicts that phytopathogenic isolates require a cluster of three loci present on a linear plasmid, with...
Resource Type:: Article

Analysis of genome sequences from plant pathogenic Rhodococcus reveals genetic novelties in virulence loci

Creator:: Creason, Allison L., Vandeputte, Olivier M., Savory, Elizabeth A., Davis II, Edward W., Putnam, Melodie L., Hu, Erdong, Swader-Hines, David, Mol, Adeline, Baucher, Marie, Prinsen, Els, Zdanowska, Magdalena, Givan, Scott A., El Jaziri, Mondher, Loper, Joyce E., Mahmud, Taifo, and Chang, Jeff H.
Abstract:: We report the sequence and characterization of the genomes of 21 isolates of Rhodococcus. Next generation sequencing technology was used to generate genome sequences. The reads for each genome were de novo assembled. The contigs were re-ordered, using the genome sequence of A44a as a reference. The program, Prokka, was...
Resource Type:: Dataset

Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi

Creator:: Ohm, Robin A., Feau, Nicolas, Henrissat, Bernard, Schoch, Conrad L., Horwitz, Benjamin A., Barry, Kerrie W., Condon, Bradford J., Copeland, Alex C., Dhillon, Braham, Glaser, Fabian, Hesse, Cedar N., Kosti, Idit, LaButti, Kurt, Lindquist, Erika A., Lucas, Susan, Salamov, Asaf A., Bradshaw, Rosie E., Ciuffetti, Lynda, Hamelin, Richard C., Kema, Gert H. J., Lawrence, Christopher, Scott, James A., Spatafora, Joseph W., Turgeon, B. Gillian, de Wit, Pierre J. G. M., Zhong, Shaobin, Goodwin, Stephen B., and Grigoriev, Igor V.
Abstract:: Correction 5 Mar 2013: Ohm RA, Feau N, Henrissat B, Schoch CL, Horwitz BA, et al. (2013) Correction: Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi. PLOS Pathogens 9(3): 10.1371/annotation/fcca88ac-d684-46e0-a483-62af67e777bd
Resource Type:: Article
Full Text:: Henrissat3, Conrad L. Schoch4, Benjamin A. Horwitz5, Kerrie W. Barry1, Bradford J. Condon6, Alex C

Comparative Genomics of Plant-Associated Pseudomonas spp.: Insights into Diversity and Inheritance of Traits Involved in Multitrophic Interactions

Creator:: Loper, Joyce E., Hassan, Karl A., Mavrodi, Dmitri V., Davis, Edward W., II, Lim, Chee Kent, Shaffer, Brenda T., Elbourne, Liam D. H., Stockwell, Virginia O., Hartney, Sierra L., Breakwell, Katy, Henkels, Marcella D., Tetu, Sasha G., Rangel, Lorena I., Kidarsa, Teresa A., Wilson, Neil L., van de Mortel, Judith E., Song, Chunxu, Blumhagen, Rachel, Radune, Diana, Hostetler, Jessica B., Brinkac, Lauren M., Durkin, A. Scott, Kluepfel, Daniel A., Wechter, W. Patrick, Anderson, Anne J., Kim, Young Cheol, Pierson, Leland S., III, Pierson, Elizabeth A., Lindow, Steven E., Kobayashi, Donald Y., Raaijmakers, Jos M., Weller, David M., Thomashow, Linda S., Allen, Andrew E., and Paulsen, Ian T.
Abstract:: We provide here a comparative genome analysis of ten strains within the Pseudomonas fluorescens group including seven new genomic sequences. These strains exhibit a diverse spectrum of traits involved in biological control and other multitrophic interactions with plants, microbes, and insects. Multilocus sequence analysis placed the strains in three sub-clades,...
Resource Type:: Article
Full Text:: . Henkels1, Sasha G. Tetu3, Lorena I. Rangel2, Teresa A. Kidarsa1, Neil L. Wilson3, Judith E. van de Mortel5

Comparative Genomics of Plant-Associated Pseudomonas spp.: Insights into Diversity and Inheritance of Traits Involved in Multitrophic Interactions

Creator:: Loper, Joyce E., Hassan, Karl A., Mavrodi, Dmitri V., Davis, Edward W., II, Lim, Chee Kent, Shaffer, Brenda T., Elbourne, Liam D. H., Stockwell, Virginia O., Hartney, Sierra L., Breakwell, Katy, Henkels, Marcella D., Tetu, Sasha G., Rangel, Lorena I., Kidarsa, Teresa A., Wilson, Neil L., van de Mortel, Judith E., Song, Chunxu, Blumhagen, Rachel, Radune, Diana, Hostetler, Jessica B., Brinkac, Lauren M., Durkin, A. Scott, Kluepfel, Daniel A., Wechter, W. Patrick, Anderson, Anne J., Kim, Young Cheol, Pierson, Leland S., III, Pierson, Elizabeth A., Lindow, Steven E., Kobayashi, Donald Y., Raaijmakers, Jos M., Weller, David M., Thomashow, Linda S., Allen, Andrew E., and Paulsen, Ian T.
Abstract:: We provide here a comparative genome analysis of ten strains within the Pseudomonas fluorescens group including seven new genomic sequences. These strains exhibit a diverse spectrum of traits involved in biological control and other multitrophic interactions with plants, microbes, and insects. Multilocus sequence analysis placed the strains in three sub-clades,...
Resource Type:: Article
Full Text:: . Henkels1, Sasha G. Tetu3, Lorena I. Rangel2, Teresa A. Kidarsa1, Neil L. Wilson3, Judith E. van de Mortel5

ScholarsArchive@OSU

The development of broad-spectrum antiviral medical countermeasures to treat viral hemorrhagic fevers caused by natural or weaponized virus infections

Phytoplankton in Upper Willamette Reservoirs Dataset

Supplemental data to "Casting a broader net: Using microfluidic metagenomics to capture aquatic biodiversity data from diverse taxonomic targets"

Genomic sequencing and transposon mutagenesis of a biocontrol strain of Burkholderia seminalis identify genes essential to suppression of orchid necrosis caused by B. gladioli

Assessing the Health of the U.S. West Coast with a Regional-Scale Application of the Ocean Health Index

Analysis of Genome Sequences from Plant Pathogenic Rhodococcus Reveals Genetic Novelties in Virulence Loci

Analysis of genome sequences from plant pathogenic Rhodococcus reveals genetic novelties in virulence loci

Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi

Comparative Genomics of Plant-Associated Pseudomonas spp.: Insights into Diversity and Inheritance of Traits Involved in Multitrophic Interactions

Comparative Genomics of Plant-Associated Pseudomonas spp.: Insights into Diversity and Inheritance of Traits Involved in Multitrophic Interactions

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