While sophisticated tools are used to monitor behavioral changes of large marine vertebrates, determining whether these changes are meaningful for management and conservation is challenging. The Population Consequences of Disturbance model proposed a bioenergetics model to detect biologically meaningful population responses, where disturbance costs are linked to lost energy. The...
Beginning in the late 1960s and throughout the past decade, unusual, perhaps neoplastic, large cells with rather consistent characteristics were described in mussels, clams, and oysters from several bays in the United States and the United Kingdom. The large, characteristic cells are thought by many workers to be abnormal leukocytes...
The synchrony between coastal and shelf-slope copepod communities was investigated in the northern California Current (NCC) system, a strong upwelling zone, using time series of zooplankton sampled from a nearshore station (9 km offshore, water depth 62 m) and a shelf-slope station (46 km offshore, water depth 297 m). Long-term...
There are several assumptions regarding the behavior and motivations of participants in fishery management that may hinder the effectiveness of the management process. In this research, we examine whether the commercial fishing industry is a homogeneous group whose decision-making is dominated by short-term economic considerations to the detriment of long-term...
Published August 1992. Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog
We tracked three groups of steelhead Oncorhynchus mykiss smolts implanted with acoustic transmitters to determine whether the degree of hatchery domestication or the juvenile rearing environment (hatchery raceway versus natural stream) influenced migration timing and survival in the Alsea River and estuary, Oregon. Two groups consisted of age-1 smolts reared...
This is a description of the physical setting and distribution of plant and animal species near the mouth of the Salmon River. Intertidal invertebrates are emphasized. A more marine location is contrasted with a more estuarine site.
Dramatic declines of the native northeast Pacific mud shrimp, Upogebia pugettensis over the last three decades have occurred in response to intense infestations by the Asian bopyrid isopod parasite, Orthione griffenis, that was introduced in the 1980s. We report herein the arrival of the Asian mud shrimp, Upogebia major, in...
An indirect fluorescent antibody test (IFAT) was developed for detection of the rickettsia that was causing epizootics among salmonids cultured in seawater net-pens in southern Chile. Antiserum against the rickettsial agent was produced in New Zealand white rabbits with a preparation grown in antibiotic-free chinook salmon embryo (CHSE-214) cell cultures...
"Kokanee were originally stocked in Detroit Reservoir in 11959. This species was introduced in hopes that it would utilize pelagic zoo plankton and provide a more varied sport fishery. The trout fishery in the reservoir depends primarily on heavy plants of legal-sized rainbow trout, supplemented by stocking fingerling rainbow. As...
A critical seasonal event for anadromous Chinook salmon (Oncorhynchus tshawytscha) is the time at which adults migrate from the ocean to breed in freshwater. We investigated whether allelic variation at the circadian rhythm genes, OtsClock1a and OtsClock1b, underlies genetic control of migration timing among 42 populations in North America. We...
Standard larval Pacific oyster (Crassostrea gigas) rearing systems can be described as either static or continuous flow. While rearing oyster larvae in static cultures can be a low-cost and simple method, static systems require significant husbandry effort, floorspace and can produce highly variable results due to environmental variance among cultures....
Marine heat waves are forecasted to increase in frequency and intensity under future climate scenarios, but little is known about the impact of these events on the one of the most commonly used proxies of ocean temperature - foraminiferal assemblages. This research explores the planktic foraminifera community along the Newport...
A student report for a Civil Engineering 572 class, this document is an extensive description of the Salmon River estuary, including water flow, quality, predictions for the estuary’s future, and numerous charts and graphs.
"In January 1946 the Oregon State Game Commission authorized a study of Diamond Lake to determine reason for an apparent decline in the size and number of rainbow trout with the object of maintaining a maximum annual yield through proper management." (From Introduction)
"Kokanee salmon, Oncorhynchus nerka (Walbaum), are well distributed over much of central and eastern Oregon but are relative newcomers to lakes along the Oregon coast. Kokanee were first introduced into coastal waters in 1952 when 51,802 fry were planted in Woahink Lake, a few miles south of Florence. So far...
A new checklist of the macrobenthic marine algae of Oregon is presented. The new list includes 50 new records and 90 new names, providing an overall nomenclatural change in the recorded flora of 36 percent since the earlier list of Phinney (1977). Of the 387 taxa reported, 20 percent have...
This is a student report which studies the effects of wave action on intertidal zonation at Yaquina Head. It includes hand-drawn diagrams of quadrants sampled at the location.
Lithothamnion rnuelleri is reported for the first time as one of the main components of rhodolith beds along the Eastern Pacific Ocean based on samples from Washington State (USA), Pacific Baja California (Mexico), southern Nicaragua, and Costa Rica. Individual rhodoliths ranged from fruticose to lumpy in morphology, and bi-sporangial, tetrasporangial,...
Patterns of seasonal abundance of harbor seals at Netarts and Tillamook Bays, Oregon, were documented by recording numbers of seals hauling out on tidally exposed sand flats in both bays. Harbor seal abundance at Tillamook Bay peaked during pupping (May-June) and molting (August) periods, while peak abundance at Netarts Bay...
Superpopulation capture–recapture models are useful for estimating the abundance of long-lived, migratory species because they are able to account for the fluid nature of annual residency at migratory destinations. Here we extend the superpopulation POPAN model to explicitly account for heterogeneity in capture probability linked to reproductive cycles (POPAN-τ). This...
Fisheries management that is based on quantitative assessment has commonly relied on estimating the unfished biomass of a fished stock to compare current and historical population size. Developing predictive models for this requires many years of catch and abundance data. Smaller, new, or mainly recreational fisheries may not have the...
During January–February 2009, an active-source seismic survey was performed over the Eastern Lau Spreading Center in the Lau Back-Arc Basin (21°S, 176°S). Acoustic signals generated by the R/V Langseth's 36-gun pneumatic source array were recorded within the deep sound channel at offsets of 29–416 km. The local ocean acoustic environment...
The purpose of this book is to provide you with a bit more information about the organisms maintained at the ASLC so that you may deepen your understanding and appreciation of them. However, as a prelude to the more species-specific information contained in this document, there are three short chapters...
Prior studies have demonstrated that juvenile walleye pollock Theragra chalcogramma forage socially in schools for spatially and temporally clumped food, but forage more independently for spatially and temporally dispersed food. One advantage of social foraging is that fish in schools may be able to locate more food clumps than fish...
The Amphipoda have been divided into the suborders Gammaridea,
Caprellidea, Cyamidea, Hyperiidea and Ingolfiellidea
(Schram 1986, Crustacea. Oxford University Press, New
York). However, Myers and Lowry (2003) regard the caprellids,
or skeleton shrimps, and the cyamids, or whale lice, as
families Caprellidae and Cyamidae. These distinctive groups
are covered in...
Pandalis jordani Rathbun, like many other species of pandalid shrimps, undergo regular diel changes in their vertical distribution (Tegelberg and Smith 1957; Alverson et al. 1960; Pearcy 1970, 1972; Robinson in press). Little is known, however, about the vertical distribution and diel migrations of larval and juvenile shrimp, or at...
The management policy of the Fish Commission of Oregon concerning the Pacific pink shrimp, (Pandalus jordani) has resulted in regulations which apply to all shrimp along the Oregon coast and do not recognize separate populations. There are several shrimp grounds along the 300-mile length of the continental shelf off Oregon...
As a prelude to tagging studies on pink shrimp (Pandalus jordani) or other laboratory studies, basic information was needed to establish criteria necessary to hold shrimp in aquariums with minimum mortality. A one-year study was conducted at the Fish Commission Laboratory in Newport to obtain data on these requirements. The...
Various methods have been developed to mitigate the adverse effects of the Federal Columbia River Power System on juvenile Pacific salmon out-migrating through the Columbia River basin. In this study, we found that hatchery-reared spring Chinook salmon Oncorhynchus tshawytscha in the river are in varying degrees of health, which may...
Accurate estimation of historical abundance provides an essential baseline for judging the recovery of the great whales. This is particularly challenging for whales hunted prior to twentieth century modern whaling, as population-level catch records are often incomplete. Assessments of whale recovery using pre-modern exploitation indices are therefore rare, despite the...
An article detailing the intense storms on the Pacific Northwest coast in the last 10 days of October 1977. Reprinted from Mariners Weather Log 22 (2).
The introduced Asian parasitic bopyrid isopod, Orthione griffenis, was first discovered on the Pacific coast of North America in Washington in 1988 and next in California in 1992. The range of Orthione presently extends from British Columbia to Baja California, where it infests at least two species of the native...
Species conservation depends on robust population assessment. Data on population abundance, distribution, and connectivity are critical for effective management, especially as baseline information for newly documented populations. I describe a pygmy blue whale (Balaenoptera musculus brevicauda) population in New Zealand waters with year-round presence that overlaps with industrial activities. This...
The taxonomic composition, distribution, concentration, and community structure of ichthyoplankton off the Oregon and Washington coasts were examined in 2004-2009 to investigate annual, seasonal, latitudinal, and cross-shelf variability. Larval concentrations and community structure were also analyzed in relation to several local and larger-scale environmental variables. The dominant taxa, comprising 94%...
Advances in mobile autonomous vehicles for oceanographic sensing provide new opportunities for passive acoustic monitoring of marine mammals. Acoustically equipped mobile autonomous platforms, including gliders, deep-water profiling floats, and drifting surface buoys can survey for a variety of marine mammal species over intermediate spatiotemporal scales. Additionally, such mobile platforms may...
The fisheries literature embodies critical assumptions about fisherman attitudes and motivations. Common assumptions are that populations of fisherman are homogeneous in motivation and decision making and that they behave in a myopic fashion, ignoring the effects of their fishing activities on the fishery resource. The results of a survey of...
Periodic weighing of seabird chicks is labour-intensive and repeated handling can cause high levels of disturbance to chicks. Although automatic weighing systems using a fibreglass nest have been designed for albatross species with a pedestal nest made of mud, this approach is inappropriate for great albatross species (genus Diomedea) whose...
Vibrio coralliilyticus (Vcor) is a bacterial pathogen that is well adapted to shellfish hatcheries and is very pathogenic to the larvae of the Pacific oyster Crassostrea gigas. Vcor has been associated with several large scale larval mortality events in the Pacific Northwest that interrupt the supply of seed oysters available...
Growth increment widths from hard structures of marine and freshwater fish and bivalve species are increasingly used to model growth and elucidate relationships with environmental variability. Fully characterizing the intrinsic age-related growth variation among individuals within and between populations, while estimating the extrinsic environmental effects simultaneously, can be challenging. Using...
Seabirds have often been proposed as environmental indicators. Beached bird data may provide an additional data source and such data is efficacious because it can reliably be collected by volunteers. In addition to anthropogenic factors, such as oil spills, changes in the ocean-atmosphere can affect carcass beaching rate in 3...
Behavioral responses of juvenile bluefish P. saltatrix L. exposed to cold water in a vertical thermal gradient were measured under controlled laboratory conditions. The temperature regime was similar to conditions that these fish encounter in their inshore and estuarine habitats along the Middle Atlantic coast. Measures included activity, schooling, position...
We evaluated the effect of barotrauma on the behavior of nine species of Pacific rockfish Sebastes spp. after hook-and-line capture and release using a video-equipped underwater release cage. Sampling was conducted across a range of bottom depths (12-194 m), mostly where barotrauma resulting from an expanded swim bladder and gaseous...
"Seafood canneries in lower Yaquina Ray, Oregon process shrimp (Pandalus jordani), Dungeness crab (Cancer magister), a variety of bottom fish and several salmon species. The shrimp wastes are screened and discharged directly into the Ray beneath the cannery docks. During the shrimp processing season about 3.8 million liters of wastes...
To determine the invasion threat to the NE Pacific of marine algae arriving on Japanese debris from the 2011 Great Tōhoku Earthquake and Tsunami, my colleagues and I took up the task of identifying the algal species on 42 of the most heavily fouled debris items that landed on the...
To determine the invasion threat to the NE Pacific of marine algae arriving on Japanese debris from the 2011 Great Tōhoku Earthquake and Tsunami, my colleagues and I identified the algal species on 42 of the most heavily fouled debris items that landed on the shores of Oregon and Washington...
Assessments for many U.S. Pacific coast groundfish stocks have been developed using the statistical catch-at-age method known as Stock Synthesis. This study used Monte Carlo simulation and a fractional factorial experiment to evaluate the effects of input data errors and stock characteristics on bias and precision in estimates of ending...
Bibliographia Bopyridarum is prepared and maintained by John Markham, Arch Cape, Oregon, USA. Any reports of errors or omissions are greatly appreciated. Please contact Dr. Markham with suggestions: jmarkham@seasurf.net This file is updated annually.
The California Current Ecosystem (CCE) is a dynamic marine ecosystem from which many socioeconomically important fisheries species are harvested. Here, a genotyping-by-sequencing (GBS) approach was used to examine genomic variation in an early life stage (megalopae) of the Dungeness crab (Cancer magister), which constitutes the most valuable single-species commercial fishery...
The California Current Ecosystem (CCE) is a dynamic marine ecosystem from which many socioeconomically important fisheries species are harvested. Here, a genotyping- by-sequencing (GBS) approach was used to examine genomic variation in an early life stage (megalopae) of the Dungeness crab (Cancer magister), which constitutes the most valuable single-species commercial...
Unusual collections of several euphausiid, chaetognath, and copepod species help elucidate
the effects of the strong 1997/1998 El Niño off the central Oregon, USA, coast. Furcilia of Nyctiphanes simplex, a euphausiid typically found only as far north as central California, were collected in bi-weekly nearshore samples between December 1997 and...
Length of survival of the monogenetic trematode Gyrodactylus stellatus in serum and mucus collected from English soles Pleuronectes vetulus at different stages of a laboratory epizootic suggests that both the mucus and serum may be involved in resistance to the parasite. In general, trematode survival was shorter in the serum...
The bivalve Pacific geoduck (Panopea generosa) has been used in the eastern North Pacific Ocean to create proxies for environmental factors such as temperature and oceanographic conditions. This type of research depends upon accurate age determination of Pacific geoducks, which historically was based on shell growth-increment counts. A recent study...
Fishes with closed swim bladders regulate buoyancy during depth changes by secreting and
resorbing swim bladder gases. Forced ascent during fishery capture results in barotrauma caused by rapid expansion and exsolution of gases from body fluids. Pressure changes in hyperbaric chambers were used to examine changes in swim bladder integrity...
One aspect of diadromy that has received little attention is buoyancy regulation in fish moving between freshwater and marine environments. Because of density differences between the two water types, fish must alter their whole-fish density (WFD) or they will become positively (float) or negatively (sink) buoyant as they change environments....
REFEWLS - REnewable Food Energy Water on Land and Sea Nexus
This project will explore the connections between food, energy, and water uses along Oregon's mid coastal regions with a emphasis and focus on Newport. On average Newport uses approximately 2,000,000 gallons of water per day, but in the tourist...
The sablefish Anoplopoma fimbria is a valuable North Pacific Ocean species that, when not targeted in various commercial fisheries, is often a part of discarded bycatch. Predictions of the survival of discarded fish are dependent on understanding how a fish responds to stressful conditions. Our objective was to describe the...
A simple behavioral test was devised to determine the effects of multiple acute stresses on the avoidance response time of fish. Groups of freshwater-adapted juvenile chinook salmon Oncorhynchus tshawytscha were exposed to a sudden overhead light and the time it took each fish to reach cover was noted. Tests were...
Protein profiles and serological characteristics of 3 rhabdoviruses from snakehead fish Ophicephalus striatus were determined and compared to 5 known fish rhabdoviruses and 1 mammalian rhabdovirus. The snakehead rhabdovirus (SHRV) exhibited a bacilliform morphology and a Lyssavirus-type protein profile. The ulcerative disease rhabdovirus isolates (UDRV-BP and UDRV-19) were indistinguishable and...
The goal of this study was to describe the duration and magnitude of the physiological stress response in lingcod Ophiodon elongatus after exposure to brief handling and sublethal air stressors. The response to these stressors was determined during a 24‐h recovery period by measuring concentrations of plasma cortisol, lactate, glucose,...
Arctic freshwater ecosystems have been profoundly affected by climate change. Given that the Arctic charr (Salvelinus alpinus) is often the only fish species inhabiting these ecosystems, it represents a valuable model for studying the impacts of climate change on species life‐history diversity and adaptability. Using a genotyping‐by‐se‐ quencing approach, we...
The Antarctic blue whale (Balaenoptera musculus intermedia) was hunted to near extinction between 1904 and 1972, declining from an estimated initial abundance of more than 250,000 to fewer than 400. Here, we describe mtDNA control region diversity and geographic differentiation in the surviving population of the Antarctic blue whale, using...
Identification and classification of behavior states in animal movement data can be complex, temporally biased, time-intensive, scale-dependent, and unstandardized across studies and taxa. Large movement datasets are increasingly common and there is a need for efficient methods of data exploration that adjust to the individual variability of each track. We...
Climatic effects in the ocean at the community level are poorly described, yet accurate predictions about ecosystem responses to changing environmental conditions rely on understanding biotic responses in a food-web context to support knowledge about direct biotic responses to the physical environment. Here we conduct time-series analyses with multivariate autoregressive...