The state of the knowledge for fault behavior in the northwest Himalaya and California varies dramatically. In the Pakistan and Kashmir Himalaya, few data constrain the role that individual active faults play in accommodating Indo-Eurasian convergence and the relative earthquake hazard across the region. By contrast, the San Andreas fault...
Wheat stripe rust (WSR), also called yellow rust of wheat (Tricitum spp.), causal agent Puccinia striiformis f.sp. tritici (Pst), is a foliar disease of major economic importance on wheat, especially grown in temperate locations. WSR causes major losses of wheat yield, estimated at nearly $ 1 billion per year, and...
It has long been observed that stress can increase our
susceptibility to infectious diseases and cancers. Recent
experimental evidence suggests that this increased susceptibility is
due to suppression of immunity. A variety of neuroendocrine products
are released during periods of stress, and a large number of these
are now known...
Most studies of plant disease epidemiology have focused on epidemics in host
populations composed of a single genotype. But crop plant diversity can be a useful
means of improving the deployment of resistance genes. In a series of experiments with wheat stripe rust and potato late blight, we studied factors...
Primary disease gradients of wheat stripe rust, caused by the aerially dispersed fungal pathogen Puccinia striformis, were measured in Madras and Hermiston, OR in the springs of 2002 and 2003. Disease foci were created by inoculating a 1.52m x 1.52m area in each of three replicate field plots (6.1m wide...
Mycosphaerella graminicola (anamorph Septoria tritici) causes Septoria tritici blotch, a globally important disease of winter wheat. Resistance and pathogenicity generally vary quantitatively. The pathogen reproduces both sexually and asexually, and the pathogen population is highly genetically variable. Several unresolved questions about the epidemiology of this pathosystem are addressed by this...
At the intersection of basic science research and clinical relevance, cancer metastasis and cell invasion is a multifaceted problem that has been investigated for the past several decades. Importantly, cancer cell plasticity, the ability of a single cell to change its phenotype without genetic mutations in response to environmental cues,...
The public controversy over possible health hazards from radioactive fallout from atomic bomb testing began in 1954, shortly after a thermonuclear test by the United States spread fallout world wide. In the dissertation, I address two of the fundamental questions of the fallout controversy: Was there a threshold of radiation...
A study consisting of three parts was undertaken to investigate how variation in species interactions, population genetic structure, epidemiological parameters, and plant breeding system may influence the ecology and biological control of an apomictic invasive plant, Chondrilla juncea (Asteraceae). Interactions between natural enemy species may modify their net effect on...
With the rise of resistant bacterial pathogens, currently prescribed antibiotics are rendered useless. In recent years, marine natural products (MNPs) have emerged as novel sources for drug leads. The ocean is a complex environment where marine animals cohabitate with many, and sometimes harmful microorganisms and viruses, but resist infections. Developed...
Disease detection through traditional techniques such as scouting fields on foot, molecular assays, or morphological identification of plant pathogens is time consuming and costly. Disease diagnosis in the field can be extremely subjective, and largely depends on the experience and knowledge of pathogen identification and disease quantification. This thesis provides...
Grapevine red blotch virus (GRBV), the causal agent of red blotch disease (RBD) in grapevine, Vitis vinifera L., is an emerging pathogen of significance to the wine grape industry of Oregon, USA. To address knowledge gaps of GRBV epidemiology, spread of GRBV was evaluated in Oregon vineyards over four years....
Bacterial soft rot of potato (Solanum tuberosum), caused by Pectobacterium and Dickeya species, is among the most common and destructive potato diseases in the United States. These pathogens cause a variety of vascular wilts, and in potato cause a disease complex that includes tuber soft rot, blackleg, aerial stem rot,...
Podosphaera macularis, causal agent of hop powdery mildew, is known to produce cleistothecia (syn. chasmothecia) in eastern North America and Europe, but ascocarps are not reported from the Pacific Northwestern region of North America. Reasons for the apparent absence of cleistothecia in the Pacific Northwest are unknown. We established that...
Plant pathogens in the genus Phytophthora are known to cause disease on field crops, nursery plants, and forest trees. The best known example probably is Phytophthora infestans, which triggered the infamous Irish potato famine. Other important Phytophthora species include: P. ramorum (sudden oak death pathogen), P. sojae (soybean root rot...
For Pacific salmon, the evolution of local adaptations depends upon the species' propensity to return, or "home", to natal streams at time of reproduction. Pacific salmon use olfactory cues to guide homing behavior, yet little is known about the genetics of olfaction in salmon. In this study, I use putatively...
The two studies of this dissertation examined mothers' perspectives of nonresident fathers' involvement in low-income families. The overall goal of these studies was to gain a more comprehensive understanding of nonresident fathers' involvement and its effect on family well-being. In the first study I applied a relatively new methodology, zero-inflated...
Motivation: It can take considerable amounts of time and effort to use existing computational tools to analyze a small RNA sequence for the purpose of determining if it is characteristic of microRNA. It is similarly tedious to search for homologs to known microRNA sequences in the rapidly growing collection of...
Protein secondary structure prediction plays a pivotal role in predicting protein folding in three-dimensions. Its task is to assign each residue one of the three secondary structure classes helix, strand, or random coil. This is an instance of the problem of sequential supervised learning in machine learning. This thesis describes...
Media application on the internet has become more and more popular as the bandwidth of the network links increase. The bottleneck of the existing media systems is no longer the link bandwidth at user’s end, but the server’s ability to handle streaming requests. These existing streaming systems do not scale...
Multi-relation aggregation queries process the join operator before computing the aggregation function. This join is arguably the most costly operation since traditional join algorithms spend majority of their time trying to join the parts of the relations that do not generate any output tuples. This causes slow response times with...
The utility of high-throughput, computational screening has become an invaluable asset to the field of materials science. In the hierarchy of computational methods, the most accurate methods are often the most computationally expensive. However, as both the efficiency and fidelity of numerical techniques advance, high-quality screening of large materials datasets...
Most database users do not know formal query languages, such as SQL, and prefer to express their information needs using usable query languages, such as keyword queries. Keyword queries, however, are inherently ambiguous and challenging for the database systems to understand and answer effectively. We propose a novel approach to...
The emerging use of portable digital devices by students, parents and teachers, is forcing schools to develop real-time communication systems that integrate technology into the general operations of schools, and contemplate governing policies and procedures to sustain and guide the challenges of these new technologies. This study contributes to this...
Messenger RNA (mRNA) therapy has massive potential to treat various genetic disorders by providing effective proteins to the diseased cells and tissues. Its therapeutic applications include protein replacement, genome editing, and immunotherapy. For successful mRNA treatment, mRNA must be delivered to the cytosol of target cells. One of the leading...
Establishment of marine protected areas (MPAs) has been documented to effectively manage marine resource's diversity and enhance fisheries productivity. However, there must be a critical consideration of how these sites are selected and the actual description of the site itself. Its effectiveness is greatly dependent on understanding these habitats and...
The purpose of this research was to examine the
effects of a co-curricular program on the behavior of
seriously emotionally disturbed (SED) middle school
students. Co-curricular activities are any school-based activities that give students an opportunity to
blend the various aspects of their academic learning
with personal actions.
This was...
Academic success is a salient domain of youth development and is related to positive lifelong outcomes among youth in foster care. However, youth in foster care experience compounding adversities, including maltreatment and foster care placement itself, which put them at risk of academic disengagement and underachievement. Despite these adversities, academic...
Focus on Forestry is published by Oregon State University's College of Forestry. Our goal is to keep Forestry alumni, friends, faculty, staff, and students informed about the College of Forestry and its many activities and programs.
Relational binary operators, such as join, are arguably the most costly and frequently used operations in relational data systems. In many join algorithms, the majority of the process time is spent on scanning and attempting to join the parts of the relations that do not satisfy the join condition and...
Calls for increased farmer involvement in research and extension programs
have been numerous and well supported. One approach to integrate the collective
knowledge and experience of agricultural scientists and farmers is through whole
farm case studies (WFCS). An interdisciplinary team of 34 research and extension
personnel at Oregon and Washington...
Cell migration is fundamental for physiological processes such as immune re-sponses, wound healing and development. It is also a critical characteristic of metastatic cancer cells. An extensive amount of studies have focused on 2D sub-strates in order to understand the mechanism of cancer metastasis. However, much less is known about...
While primary use of Global Navigation Satellite System (GNSS) is positioning, navigation, and timing (PNT), various GNSS applications have emerged over the past decades that includes GNSS meteorology. GNSS meteorology is the remote sensing of the atmospheric constituents in the neutral atmosphere – mostly in the troposphere - using GNSS...
Animals aggregate and interact in nonuniform and nonrandom patterns, which lead to group level characteristics that have important evolutionary and ecological consequences. Network analysis provides a useful conceptual framework for linking animal interactions at all scales from dyads to communities, to populations and ecosystems. Despite exciting theoretical and applied advances...
Eukaryotic small RNA (~20-30 nucleotides) are diverse regulatory molecules that repress gene expression at the transcriptional and post-transcriptional levels, defend hosts against invading viruses and defend genomes against selfish DNA elements. Small RNA populations are studied by high-throughput sequencing of the total small RNA fraction isolated from cells, however, the...
Oregon Biography Index is intended to serve primarily as a starting point in locating biographies of Oregonians. We have indexed 47 historical volumes which are either entirely devoted to biographies or have large self-contained biographical sections. The profiles in the books vary widely in accuracy and detail. Birth dates of...
The arts and festivals of art have today become a vital economic
force in some areas of the country and a way of life for some people.
The number and sizes of festivals, as well as audience size, has
grown tremendously both nationally and in Oregon, since 1950. Even
the...
Many database users are not familiar with formal query languages, the concept of schema, or the exact content of their database. Thus, it is challenging for these users to formulate their information needs over semi-structured and structured databases. To address this problem, researchers have proposed usable query interfaces over which...
Since 1980, the prevalence of obesity among U.S. adults has more than doubled, accompanied by increases in chronic conditions like heart disease and diabetes. This high prevalence and associated disease burden continues to be a threat to public health. Despite years of efforts to stem the tide of obesity, successful...
The Machine Learning (ML) algorithms are increasingly explored in varies of fields including designing and optimizing computer systems. Recent research, such as optimizing memory/cache prefetching by ML training or predicting traffic pattern in throughput processors, also exhibits a promising future of introducing ML into computer system design and optimization. Throughput...
In this thesis, stature reconstruction of three prehistoric/protohistoric Native American populations (from Alaska, the Aleutian Islands, and South Dakota) was performed using the Fully Anatomical method in order to formulate regression equations and analyze the ability of regression equations of other researchers to accurately estimate the statures within my study...
This work is a representation of my competencies, experiences, reflections and learning through
the College Student Services Administration Master’s of Education program at Oregon State
University. This paper consists of both research and reflective writing and demonstrates in-depth
my learning and development over the past two years in the College...
Numerous diseases and injuries can limit a person's ability to perform everyday tasks -- things like getting dressed, bathing, and eating. Anything that requires physical activity can be affected; even simple things like turning on the lights can become difficult or impossible. Until recently, the only way for a person...
Invasive plant species are expanding and transforming vegetative communities across Oregon and throughout the United States. Over the past three decades remote sensing, geographic information system (GIS), and Global Positioning System (GPS) technologies have been integrated to detect and map the distribution of noxious rangeland plants. This study developed low-cost...
Limnology is undergoing a transition to high-throughput -omic analysis of freshwater
bacterial communities. An important first step in making the transition is to
characterize several genomes that can be used as references to guide metagenome
assembly and analysis. Here I characterize four new freshwater cyanobacterial
genomes, a pair of lake...
Future scenarios of global climate change rely on large-scale climate envelope models that do not account for local climatic conditions to which organisms most closely respond. Shifts in species distributions and phenology driven by climate change are well-documented, yet we lack a strong understanding of how climate change will influence...
Over 470 dams have been removed in the United States, and a significant increase in dam removals has
occurred since the early 1990s. The aging of dams is often cited as the primary factor influencing removals;
as dams surpass their functional life span, safety hazards, economic costs, and environmental concerns...
As modern systems continue to increase in size and complexity, they pose significant safety and risk management challenges. System engineers and much of the government research efforts are focused on understanding the attributes and characteristics that emerge from the interactions of components and subsystems. As a result, the objective of...
This dissertation argues for rooting genealogies and origin stories of Disability Studies and Mad Studies in women of color feminist scholarship-activism. Turning to women of color feminist work as “alternative origin stories” shifts Disability Studies and Mad Studies away from limiting and often racist eurowestern models of Madness/disability. Women of...
Historically, the difficulty of obtaining pure cultures of abundant marine
microbial plankton has an obstacle to reconstructing the underlying
mechanisms of biogeochemistry in the ocean. While a number of dominant
marine species from the ocean surface have been cultured, the dominant
microbial plankton of the dark ocean proved far more...
The primary purpose of the present study is to explore the effect of wearing the hijab in a Western society on Muslim women’s well-being, their motivation to wear it, and the different modifications that they have made on their hijabs. To investigate the relationship between the hijab and Muslim women’s...
European hazelnut (Corylus avellana L.) is an important crop Oregon's Willamette Valley, producing 99% of the hazelnuts grown in North America and brings over US $60 million dollars to the region annually. Hazelnuts are rich in fiber and vitamins, as well in demand by consumers due to their popularity as...
Plant sexual reproduction requires a broad array of molecular mechanisms to proceed successfully. Some of these mechanisms are well-studied, but our knowledge of them as a whole is fundamentally incomplete. Pollen tube growth is a key part of this process, facilitating the delivery of the sperm cells to the female...
Advances in low-power digital integration and microelectro-mechanical systems (MEMS) have paved the way for micro-sensors. These sensors are equipped with data processing capabilities along with sensory circuits. Sensor data are processed on these individual sensors and transmitted to the target (sink). Lowcost integration and small sizes of these sensors have...
Substantial scientific investment has been directed towards understanding factors that influence distribution patterns and animals' remarkable ability for precise orientation and navigation, yet fundamental gaps in our knowledge remain. In my dissertation, I applied emerging genetic technologies to conduct a top-down and bottom-up investigation of animal movement and cue perception....
The purpose of this study was to examine fifth,
seventh, and tenth graders' attitudes toward school and
classroom science by means of questionnaires and
interviews. In particular, the study hoped to determine
(a) if a relationship existed between these two attitudes,
(b) what relationship, if any, grade level, gender,
ethnicity,...
Anthropogenic climate change is threatening biodiversity as I currently understand it. There is now a large body of work highlighting species responses, globally, to this threat. Importantly, responses at the species level emerge from responses at lower levels of biological organization (individuals and populations) across a species’ geographic range. For...
The development of nuclear fuel and materials requires is a continuous effort to investigate the acute and prolonged effects of irradiation, thermal-material stress, chemical change, or other conceivable damage mechanics acquired during normal operation or accident scenarios throughout its lifetime. As in-core fuel property measurement techniques advance to support in...
Bayesian Optimization (BO) methods are often used to optimize an unknown function f(•) that is costly to evaluate. They typically work in an iterative manner. In each iteration, given a set of observation points, BO algorithms select k ≥ 1 points to be evaluated. The results of those points are...
The goal of many machine learning problems can be formalized as the creation of a function that can properly classify an input vector, given a set of examples of that function. While this formalism has produced a number of success stories, there are notable situations in which it fails. One...
The scarcity of wireless spectrum resources and the overwhelming demand for wireless broadband resources have prompted industry, government agencies and academia within the wireless communities to develop and come up with effective solutions that can make additional spectrum available for broadband data. As part of these ongoing efforts, cognitive radio...
Pre-existing Expressed Sequence Tag (EST) libraries (1,305 sequences) and a newly constructed microsatellite-enriched genomic library (136 clones) from the V. corymbosum cultivar 'Bluecrop' were screened for unique Simple Sequence Repeat (SSR)-containing sequences. Our goal was to develop a set of robust SSR markers for use in managing the National Clonal...
Learning novel concepts from relational databases is an important problem with applications in several disciplines, such as data management, natural language processing, and bioinformatics. For a learning algorithm to be effective, the input data should be clean and in some desired representation. However, real-world data is usually heterogeneous – the...
Polycyclic aromatic hydrocarbons (PAHs) are a group of environmental contaminants consisting of fused benzene rings. Parent-PAHs, methylated-PAHs (MPAHs), and PAHs with molecular weight of 302 a.m.u (MW302-PAHs) are considered as unsubstituted-PAHs. These unsubstituted-PAHs undergo transformation reactions resulting in the formation of PAH-transformation products (PAH-TPs), or substituted-PAHs, including nitrated-, oxygenated-, and...
Lake Merced results have established the lake as a viable paleoseismic site on the northern San Francisco peninsula. The lake records ~ 2300 years of event beds, 17 in total. Prior to that the lake was open to the ocean and contains marine shells consistent with an estuarine environment. The...
This dissertation has two objectives. The first objective is to determine where best to situate the study of mentoring (i.e. the 'making of scientists') on the landscape of the history of science and science studies. This task is accomplished by establishing mentoring studies as a link between the robust body...
Symbiosis is the close and protracted interaction between organisms. The molecular interactions that occur during symbiosis are complex with multiple barriers that must be overcome. Many Gram-negative, host-associated bacteria use a type III secretion system to mediate associations with their eukaryotic hosts. This secretion system is a specialized apparatus for...
The purposes of the research presented in this thesis were
to: (l) assess the nutritional status of vegetarian and nonvegetarian
Seventh-day Adventists (SDA), non-SDA non-vegetarians,
and non-vegetarian hormone dependent cancer subjects; (2) determine
the relationship of various blood and urinary biochemical
parameters to dietary intake; (3) determine hormonal status in...
A comprehensive tribal-level classification for the world's subfamilies of Hesperiidae, the skipper butterflies, is proposed for the first time. Phylogenetic relationships between tribes and subfamilies are inferred using DNA sequence data from three gene regions: 943 bp of cytochrome oxidase subunit I (COI) (in the mitochondrial genome), 739 bp of...