Movement in an important component of an animal’s life cycle when it relies on both aquatic and terrestrial habitats. When multiple species overlap in the use of these habitats, they rely on other methods to reduce competition for shared resources. This dataset measured the jumping performance and movement behavior of...
Articular cartilage damage is the primary cause of osteoarthritis. Very little literature work focuses on the microstructural damage mechanism of articular cartilage. In this article, a new numerical method that characterizes fluid coupling in particle model is proposed to study the damage mechanism of articular cartilage. Numerical results show that...
The fall cone device may be preferable to the Casagrande cup for the determination of liquid limits because it is based on a firm theoretical background and maintains a high degree of operator independence. This makes the fall cone device a superior tool for measuring consistency limits for research and...
We present an in-depth case study of a learning network that aims to transform infrastructure and practice across the research enterprise to advance societal impacts. The theory of social morphogenesis guides our processual qualitative analysis of the network. We describe how different types of boundary work, both building and navigating...
This analysis examines how and why many nonprofits and state agencies fighting domestic hunger have increasingly collaborated in unexpected ways. Interviews with nonprofit and state agency leaders in four western US states provide details about these collaborative efforts. Drawing on the concept of collaborative governance, the findings reveal important roles...
Balancing selection is one of the mechanisms which has been proposed to explain the maintenance of genetic diversity in species across generations. For species with large populations and complex life histories, however, heterogeneous selection pressures may create a scenario in which the net effects of selection are balanced across developmental...
Ocean acidification (OA) has had significant negative effects on oyster populations on the west coast of North America over the past decade. Many studies have focused on the physiological challenges experienced by young oyster larvae in high pCO₂/low pH seawater with reduced aragonite saturation state (Ωarag), which is characteristic of...
Shear wave velocity is a fundamental property of a granular assembly. It is a measure of the true elastic stiffness of a bulk specimen of discrete grains. Shear wave velocity is typically measured in the laboratory (e.g., using bender elements) or in-situ (e.g., using a seismic cone penetrometer, sCPT). In...
Nearly all soils are comprised of mixtures of coarse and fine particles. Behavior under mechanical and thermal loading of soil is strongly influenced, and in some cases governed, by the ratio of coarse to fine particles. A better understanding of the fundamental behavior of soil mixtures will provide insight to...
Captive rearing programs (hatcheries) are often used in conservation and management efforts for at-risk salmonid fish populations. However, hatcheries typically rear juveniles in environments that contrast starkly with natural conditions, which may lead to phenotypic and/or genetic changes that adversely affect the performance of juveniles upon their release to the...
Sedecula is a monotypic genus of hypogeous fungi that is rare and endemic to dry conifer forests of the western United States. The only known species, Sedecula pulvinata, was described in 1941 and its taxonomic placement and trophic status have remained uncertain ever since. Here we employ isotopic and molecular...
Sedecula is a monotypic genus of hypogeous fungi that is rare and endemic to dry conifer forests of the western United States. The only known species, Sedecula pulvinata, was described in 1941 and its taxonomic placement and trophic status have remained uncertain ever since. Here we employ isotopic and molecular...
Pine Creek Conservation Area (PCCA), just northeast of the John Day River in Wheeler County, Oregon, was acquired in 1999-2001 by the Confederate Tribes of Warm Springs with support from the Bonneville Power Administration (BPA), to mitigate for wildlife losses created by the large, hydropower Columbia River Dams, particularly the...
We evaluated how the use of bait as a fish attractant influenced the species and size composition 20 of demersal fishes viewed with a stereo video lander, at 160 sampling sites at Stonewall Bank, a 21 deepwater rocky reef complex in Oregon waters. We also studied the effectiveness of stereo...
We describe the development and practical field testing of a rugged, unbaited video lander as a visual survey tool for fishes inhabiting structurally complex, high-relief, deepwater rocky reefs. Our autonomous, high-resolution, low-light, color video lander system utilized a smooth frame design that incorporated a series of breakaway attachments and inexpensive...
Aseries of dams on the Deschutes River, Oregon, act as migration barriers that segregate the river system into upper
and lower basins. Proposed fish passage between basins would reunite populations of native potamodromous fish and
allow anadromous fish of Deschutes River origin access to the upper basin. We assessed the...
Despite its importance to biodiversity and ecosystem function, patterns and drivers of regional scale variation in forest structure and development are poorly understood. We characterize structural variation, create a hierarchical classification of forest structure, and develop an empirically based framework for conceptualizing structural development from 11,091 plots across 25 million...
Fevansia aurantiaca is an orange-colored truffle that has been collected infrequently in the Pacific Northwest of the USA. This sequestrate, hypogeous fungus was originally thought to be related to the genera Rhizopogon or Alpova in the Boletales, but the large, inflated cells in the trama and the very pale spore...
The adaptive capacity of marine calcifiers to ocean acidification (OA) is a topic of great interest to evolutionary biologists and ecologists. Previous studies have provided evidence to suggest that larval resilience to high pCO2 seawater for these species is a trait with a genetic basis and variability in natural populations....
We have compared the helium isotope ratio in five
samples of Pacific marine air spanning the 40 year period
between 1973 and 2013 against a secondary gas standard. In
a separate experiment we directly compared the ³He/⁴He
ratio in air samples collected in 1973 and 2013 at the same
location...
Communities all rely to some degree upon residents to serve in and lead the local organizations that make those communities vital. Recognizing barriers experienced by specific groups helps community leaders identify why various groups do not participate. Using data from the 2000 Social Capital Benchmark Survey, this analysis examines perceived...
BACKGROUND:
Plant gametophytes play central roles in sexual reproduction. A hallmark of the plant life
cycle is that gene expression is required in the haploid gametophytes. Consequently, many
mutant phenotypes are expressed in this phase.
RESULTS:
We perform a quantitative RNA-seq analysis of embryo sacs, comparator ovules with the
embryo...
We present a novel analysis technique to understand the dynamics of a recently described locomotion mode called legless locomotion. Legless locomotion is a locomotion mode available to a legged robot when it becomes high-centered, that is, when its legs do not touch the ground. Under these conditions, the robot may...
We evaluated the external signs of barotrauma and 48-h post-recompression survival for 17 54 canary and 81 yelloweye rockfish captured at depths of 46-174 m, much deeper than a 18 similar prior experiment, but within the depth range of recreational fishery catch and 19 discard. Survival was measured using specialized...
Kalapuya is described as a new, monotypic truffle genus in the Morchellaceae known only from the Pacific northwestern United States. Its relationship to other hypogeous genera within Morchellaceae is explored by phylogenetic analysis of the ribosomal LSU and EF1α protein coding region. The type species, K. brunnea, occurs in Douglas-fir...
Background: Statins substantially reduce cardiovascular disease risk and are generally well-tolerated, but many patients discontinue therapy. A better understanding of the characteristics of current and former statin users may be helpful for formulating strategies to improve long-term adherence.
Objective: The Understanding Statin Use in America and Gaps in Education (USAGE)...
Using remotely-sensed metrics to identify regions containing high animal diversity and/or specific animal species or guilds can help prioritize forest management and conservation objectives across actively managed landscapes. We predicted avian species richness in two mixed conifer forests, Moscow Mountain and Slate Creek, containing different management contexts and located in...
Little is known about intraspecific variation within the deacon rockfish (Sebastes di‐ aconus), a recently described species found in the northeast Pacific Ocean. We in‐ vestigated population structure among fish sampled from two nearshore reefs (Siletz Reef and Seal Rock) and one offshore site (Stonewall Bank) within a <50‐km2 area...
Previous work has shown that the Oregon shelf is a sink for atmospheric carbon dioxide (CO₂) during the upwelling season; however, until now, summertime variability in CO₂ exchange and sign of the flux for the rest of the year were unknown. Observations of the partial pressure of CO₂ (pCO₂) in...
This paper presents a new technique for shape and topology optimization of fluid channels using generative design synthesis methods. The proposed method uses the generative abilities of graph grammars with simulation and analysis power of conventional CFD methods. The graph grammar interpreter GraphSynth is used to carry out graph transformations,...
The mechanical performance of wood-based composites is determined by the mechanical properties of their individual components and the effective load transfer between these components. In laminated wood composites, this load transfer is facilitated by the adhesive bond. The experimental methodology developed in this study measures and analyzes the full-field deformation...
The load transfer between wood particles and
the matrix was analyzed by observation of the strain patterns
in thin films of high density polyethylene (HDPE)
with embedded wood particles subjected to tensile loading.
Optical measurement techniques based on the digital
image correlation (DIC) principle were employed for quantitative
measurement of...
1. Freshwater mussels (Order: Unionidae) are among the most imperiled aquatic organisms in North America. Conservationists and resource managers within the United States are increasingly advocating restoration of these animals to preserve biodiversity and boost ecosystem services in the nation’s waterways. 2. Historically, restoration methods have yielded less than optimal...
BACKGROUND: Long non-coding RNAs (lncRNAs) are transcripts that are 200 bp or longer, do not encode proteins,
and potentially play important roles in eukaryotic gene regulation. However, the number, characteristics and
expression inheritance pattern of lncRNAs in maize are still largely unknown.
RESULTS: By exploiting available public EST databases, maize...
Endoxifen has recently been identified as the predominant active metabolite of tamoxifen and is currently being developed as a novel hormonal therapy for the treatment of endocrine sensitive breast cancer. Based on past studies in breast cancer cells and model systems, endoxifen classically functions as an anti-estrogenic compound. Since estrogen...
OBJECTIVES:
A key challenge for achieving universal water access in Sub-Saharan Africa is poor sustainability of water schemes. Previous studies have posited factors that may lead to failed schemes; however, empirical data are lacking.
METHODS:
We conducted direct observations of water sources and interviewed water committee members about governance in...
TAML activators promise a novel water treatment approach
by efficiently catalysing peroxide-based degradation of
chemicals of high concern at environmental concentrations.
Green design ethics demands an exploration of TAML
toxicity. Exposure to high concentrations of certain activators
caused adverse effects in zebrafish. At typical TAML
operational concentrations, development was not...
Little is known about the impact of temperature on proanthocyanidin (PA) accumulation in grape skins, despite its
significance in berry composition and wine quality. Field-grown grapes (cv. Merlot) were cooled during the day or
heated at night by +/–8 C, from fruit set to veraison in three seasons, to determine...
Desferrioxamine B (DFOB) was reversibly and covalently conjugated to polystyrene microspheres via N-succinimidyl 3-(2-pyridyldithio)propionate (SPDP) crosslinker. DFOB retained post-immobilization activity with at least 89% able to bind Fe(III)-citrate under pH 7.4 and a citrate:iron molar ratio = 100:1. Comparing iron capture by DFOB-activated beads and sulfhydryl (−SH) control beads demonstrated...
We measured the hyporheic residence time distribution in a 2nd-order mountain stream at the H. J. Andrews Experimental Forest, Oregon, and found it to be a power-law over at least 1.5 orders of magnitude in time (1.5 hr to 3.5 d). The residence time distribution has a very long tail...
In partially migratory species, such as Oncorhynchus mykiss, the emergence of life history phenotypes is often attributed
to fitness trade-offs associated with growth and survival. Fitness trade-offs can be linked to reproductive tactics that vary between
the sexes, as well as the influence of environmental conditions. We found that O....
The effect of salmon blood plasma (SPP) on the gelation of Pacific whiting surimi under different ohmic heating conditions was investigated. SPP was found to significantly increase gel strength in gels heated ohmically to and held at 60° for 30 min followed by heating ohmically to 90°C. SPP at a...
The effect of salmon plasma (SP) from Chinook salmon on proteolytic inhibition was investigated. SP was found to inhibit both cysteine and serine proteases as well as protease extracted from Pacific whiting muscle. SP was found to contain a 55 kDa cysteine protease inhibitor through SDS-PAGE inhibitor staining. Freeze dried...
We present a general approach for optimizing the diffraction efficiency of a phase-type spatial light modulator (SLM). While the SLM displays a one-dimensional phase grating, the phase shift of one pixel in the grating is varied and the first-order diffraction efficiency is measured. This is repeated pixel-by-pixel to find the...
We examined terrestrial amphibians in managed headwater forest stands in western Oregon from 1998 to 2009. We assessed: (1) temporal and spatial patterns of species capture rates, and movement patterns with distance from streams and forest management treatments of alternative riparian buffer widths and upland thinning; (2) species survival and...
Tree mortality is an important demographic process and primary driver of forest dynamics, yet there are relatively few plot-based studies that explicitly quantify mortality and compare the relative contribution of endogenous and exogenous disturbances at regional scales. We used repeated observations on 289,390 trees in 3673 1 ha plots on...
We manipulated food inputs among patches within experimental streams to determine how variation in foraging behavior influenced demographic and phenotypic responses of juvenile steelhead trout (Oncorhynchus mykiss) to the spatial predictability of food resources. Demographic responses included compensatory adjustments in fish abundance, mean fish size, and size inequality. These responses...
We reared juvenile Oncorhychus mykiss with low and high standard metabolic rates (SMR) under alternative thermal regimes to determine how these proximate factors influence life histories in a partially migratory salmonid fish. High SMR significantly decreased rates of freshwater maturation and increased rates of smoltification in females, but not males,...
Homozygous familial hypercholesterolemia (HoFH) is a rare, genetic disorder characterized by an absence or impairment of low-density lipoprotein receptor (LDLR) function resulting in significantly elevated low-density lipoprotein cholesterol (LDL-C) levels. The cholesterol exposure burden beginning in utero greatly increases the risk for atherosclerotic cardiovascular disease (ASCVD) and premature death. The...
Background: Through next-generation sequencing, the amount of sequence data potentially available for phylogenetic analyses has increased exponentially in recent years. Simultaneously, the risk of incorporating ‘noisy’ data with misleading phylogenetic signal has also increased, and may disproportionately influence the topology of weakly supported nodes and lineages featuring rapid radiations and/or...