Background: Functional annotations of large plant genome projects mostly provide information on gene function
and gene families based on the presence of protein domains and gene homology, but not necessarily in
association with gene expression or metabolic and regulatory networks. These additional annotations are necessary
to understand the physiology, development...
Commercially managed honey bees pollinate a variety of crops in the Pacific Northwest, including tree fruits, berries, cucurbits, and crops grown for seed. This activity is economically significant. In 2004, the value of bee-pollinated crops in the region was approximately $1.7 billion. Nationally, the value of bee-pollinated crops in 2000...
Bioelution assays are fast, simple alternatives to in vivo testing. In this study, the intra- and inter-laboratory variability in bioaccessibility data generated by bioelution tests were evaluated in synthetic fluids relevant to oral, inhalation, and dermal exposure. Using one defined protocol, five laboratories measured metal release from cobalt oxide, cobalt...
Light availability strongly influences stream primary production, water temperatures and resource availability at the base of stream food webs. In headwater streams, light is regulated primarily by the riparian forest, but few studies have evaluated the influence of riparian forest stand age and associated structural differences on light availability. In...
Infection with Helicobacter pylori is a major risk factor for the development of gastric cancer, and infection with strains carrying the virulence factor CagA significantly increases this risk. To investigate the mechanisms by which CagA promotes carcinogenesis, we generated transgenic zebrafish expressing CagA ubiquitously or in the anterior intestine. Transgenic...
The genome of a herpesvirus highly pathogenic to rabbits, leporid herpesvirus 4 (LHV-4), was analyzed using high-throughput DNA sequencing technology and primer walking. The assembled DNA sequences were further verified by restriction endonuclease digestion and Southern blot analyses. The total length of the LHV-4 genome was determined to be about...
We investigated an alternative means for quantifying daytime ecosystem respiration from eddy-covariance data in three forests with different canopy architecture. Our hypothesis was that the turbulent transport by coherent structures is the main pathway for carrying detectable sub-canopy respiration signals through the canopy. The study extends previously published work by...
We discuss Einstein’s field equations in the presence of signature change using variational methods, obtaining a generalization of the Lanczos equation relating the distributional term in the stress tensor to the discontinuity of the extrinsic curvature. In particular, there is no distributional term in the stress tensor, and hence no...
Many nurseries are considering soil moisture sensor networks to improve water application efficiency. Due to
the necessarily wide distribution of sensors at a nursery, a wireless network is easier to install, more flexible, and can be
scaled up as needed without re-design as compared to a traditional wired sensor network....
Fertilizing hops improves yield and quality by supplying the crop with ample nutrition in advance of demand. Producers must combine this goal with production costs and environmental stewardship. Fertilization should be based on yield and quality response, experience, and economics. Unfortunately, limited experimental data exist linking modern cultural practices, current...