Using a systems biology approach, we discovered and dissected a three-way interaction between the immune system, the intestinal epithelium and the microbiota. We found that, in the absence of B cells, or of IgA, and in the presence of the microbiota, the intestinal epithelium launches its own protective mechanisms, upregulating...
We give a randomized O(n polylog n)-time approximation scheme for the Steiner forest problem in the Euclidean plane. For every fixed ε > 0 and given n terminals in the plane with connection requests between some pairs of terminals, our scheme finds a (1 + ε) approximation to the minimum-length...
Radiocarbon is an exceptionally useful tool for studying soil-respired CO₂, providing information about soil
carbon turnover rates, depths of production, and the biological sources of production through partitioning. Unfortunately, little
work has been done to thoroughly investigate the possibility of inherent biases present in current measurement techniques,
like those present...
This study explores the interrelationship between social capital and poverty, a negative indicator of well-being, in the Western United States. Econometric models that account for the endogeneity of poverty and social capital, spatial dependence, and cross-equation error correlation were used to explore two questions: is the presence of social capital...
The ¹⁴CO₂ composition of plant and soil respiration can be used to determine the residence time of photosynthetically fixed carbon before it is released back to the atmosphere. To estimate the residence time of actively cycled carbon in a temperate forest, we employed two approaches for estimating the Δ¹⁴CO₂ of...
The results of 703 observations are given; most of these were made in the 1930's by James Macnab, Jane Claire Dirks-Edmunds, Dorothy McKey-Fender, and others. These results are the most comprehensive throughout the year for any site above 1,000 ft in Lincoln County and hint that bird communities at sites...
In Weyburn, Saskatchewan, carbon dioxide (CO₂) is injected into the Weyburn oilfield for Enhanced Oil Recovery (EOR). Cenovus Energy Inc. operates more than 1000 active wells, processing plants, and hundreds of kilometres of pipeline infrastructure over a >100 km² area. While vehicle-based atmospheric detection of gas leakage would be convenient...
The current study investigates gender differences in behavioral regulation in four societies: the United States, Taiwan, South Korea, and China. Directly assessed individual behavioral regulation(Head–Toes–Knees–Shoulders, HTKS), teacher-rated classroom behavioral regulation (Child Behavior Rating Scale, CBRS) and a battery of school readiness assessments (mathematics, vocabulary, and early literacy) were used with...
Linden (Tilia spp.), a profusely flowering temperate tree that provides bees with vital pollen and nectar, has been associated with bumble bee (Bombus spp.) mortality in Europe and North America. Bee deaths have been attributed, with inadequate evidence, to toxicity from mannose in nectar or starvation due to low nectar...
Children’s behavioral self-regulation and executive function (EF; including attentional or
cognitive flexibility, working memory, and inhibitory control) are strong predictors of
academic achievement. The present study examined the psychometric properties of a
measure of behavioral self-regulation called the Head-Toes-Knees-Shoulders (HTKS) by
assessing construct validity, including relations to EF measures, and...
An integrated model, combining spatial wildlife population and timber harvest and growth models, was developed to explore tradeoffs between the likelihood of persistence of a wildlife species, the northern flying squirrel (Glaucomys sabrinus), and timber production on a landscape on the west side of the Oregon Cascade Range. A simplified...
Where a legacy of aggressive wildland fire suppression has left forests in need of fuel reduction, allowing wildland fire to burn may provide fuel treatment benefits, thereby reducing suppression costs from subsequent fires. The least-cost-plus-net-value-change model of wildland fire economics includes benefits of wildfire in a framework for evaluating suppression...
BACKGROUND: Consumption of sugar-sweetened beverage (SSB) has risen over the past two decades, with over 10 million Californians drinking one or more SSB per day. High SSB intake is associated with risk of type 2 diabetes, obesity, hypertension, and coronary heart disease (CHD). Reduction of SSB intake and the potential...
Since its introduction in France 10 years ago, the yellow-legged Asian bee-hawking hornet Vespa velutina has rapidly spread to neighboring countries (Spain, Portugal, Belgium, Italy, and Germany), becoming a new threat to beekeeping activities. While introduced species often leave behind natural enemies from their original home, which benefits them in...
Temperate forests play an important role in the global carbon cycle, and are thought to currently be a sink for atmospheric CO₂. However, we lack understanding of the drivers of forest carbon accumulation and loss, hampering our ability to predict carbon cycle responses to global change. In this study, we...
We report on a novel class of semiconductor metamaterials that employ a strongly anisotropic dielectric function to achieve negative refraction in the midinfrared region of the spectrum, ~8.5–13 μm. We present two types of metamaterials, layered highly doped/undoped heterostructures and quantum well superlattices that are highly anisotropic. Contrary to other...
Rice, maize, sorghum, wheat, barley and the other
major crop grasses from the family Poaceae
(Gramineae) are mankind’s most important source
of calories and contribute tens of billions of dollars
annually to the world economy (FAO 1999, http://www.fao.org; USDA 1997, http://www.usda.gov).
Continued improvement of Poaceae crops is necessary
in order...
Worldwide, in recent years capture fisheries targeting lower-trophic level forage fish and euphausiid crustaceans have been substantial (∼20 million metric tons [MT] annually). Landings of forage species are projected to increase in the future, and this harvest may affect marine ecosystems and predator-prey interactions by removal or redistribution of biomass...
Gramene (www.gramene.org) is a curated resource
for genetic, genomic and comparative genomics
data for the major crop species, including rice,
maize, wheat and many other plant (mainly grass)
species. Gramene is an open-source project.
All data and software are freely downloadable
through the ftp site (ftp.gramene.org/pub/gramene)
and available for use...
Climate-induced changes may be more substantial within the marine environment, where following ecological change is logistically difficult, and typically expensive. As marine animals tend to produce stereotyped, long-range signals, they are ideal for repeatable surveying. In this study we illustrate the potential for calling rates to be used as a...
We describe the migration distances and timing of the adult Pacific lamprey, Entosphenus tridentatus, in the Willamette River Basin (Oregon, U.S.A.). We conducted aerial surveys to track radio-tagged fish upstream of a major waterfall and hydropower complex en route to spawning areas. We detected 24 out of the 43 fish...
Calanus finmarchicus (Gunnerus) stratify narrowly near 500 m depth during their fifth copepodite resting phase in North Atlantic Slope Water off southern New England, USA. They probably achieve this by migration to a specific, daytime isolume. Photoperiod information provided by light intensity at depth could serve as a cure for...
Ocular infection by HSV-1 strain McKrae is neurovirulent in both mice and rabbits and causes fatal encephalitis in approximately 50% of animals. In addition, it spontaneously reactivates with high frequency relative to other HSV-1 strains in rabbits. We sequenced the McKrae strain genome and compared its coding protein sequences with...
Important progress in understanding replication, interactions with host plants, and evolution of closteroviruses enabled engineering of several vectors for gene expression and virus-induced gene silencing. Due to the broad host range of closteroviruses, these vectors expanded vector applicability to include important woody plants such as citrus and grapevine. Furthermore, large...
Viruses were defined as one of the two principal types of organisms
in the biosphere, namely, as capsid-encoding organisms in
contrast to ribosome-encoding organisms, i.e., all cellular life
forms. Structurally similar, apparently homologous capsids are
present in a huge variety of icosahedral viruses that infect bacteria,
archaea, and eukaryotes. These...
Viruses and other selfish genetic elements are dominant entities in the biosphere, with respect to both physical abundance and genetic diversity. Various selfish elements parasitize on all cellular life forms. The relative abundances of different classes of viruses are dramatically different between prokaryotes and eukaryotes. In prokaryotes, the great majority...
Most readers are familiar with (and indeed weary of) the long-running serials crisis: budgets have stagnated as the cost of serials for STEM disciplines continues to rise (Bosch & Henderson, 2016). These circumstances force libraries to cancel journals, affecting researchers’ instant access to articles. Nearly two decades ago, Mobley (1998)...
The Pacific lamprey (Entosphenus tridentatus) is in decline in the Columbia River Basin, and translocating adult lamprey to bypass difficult migration corridors has been implemented since 2000. We describe and report results from two current translocation programs, provide context for use of translocation, and discuss potential benefits, risks, and uncertainties....
The Gene Ontology (GO) Consortium (http://www.geneontology.org) (GOC) continues to develop,
maintain and use a set of structured, controlled
vocabularies for the annotation of genes, gene
products and sequences. The GO ontologies
are expanding both in content and in structure.
Several new relationship types have been introduced
and used, along with...
Describing the mechanisms that drive variation in species interaction strengths is central to understanding, predicting, and managing community dynamics. Multiple factors have been linked to trophic interaction strength variation, including species densities, species traits, and abiotic factors. Yet most empirical tests of the relative roles of multiple mechanisms that drive...
Accelerated release of carbon from soils is one
of the most important feedbacks related to anthropogenically
induced climate change. Studies addressing the mechanisms
for soil carbon release through organic matter decomposition
have focused on the effect of changes in the average temperature,
with little attention to changes in temperature variability....
Hepatitis E virus (HEV) infection is a cause of hepatitis in humans worldwide. Recently, persistent and chronic HEV infections have been recognized as a serious clinical problem, especially in immunocompromised individuals. To date, there are no FDA-approved HEV-specific antiviral drugs. In this study, we designed and evaluated antisense peptide-conjugated morpholino...
Muddy and/or musty off-flavors in farmed-raised catfish occur as a result of the absorption of geosmin (GEO) and 2-methylisoborneol (MIB), compounds produced by algae. Previous research suggests the acid pH-shift method may be able to reduce off-flavors to produce a consumer acceptable product. The objective of this research was to...
Soil organic matter is a complex mixture of material with heterogeneous biological, physical, and chemical properties. Decomposition models represent this heterogeneity either as a set of discrete pools with different residence times or as a continuum of qualities. It is unclear though, whether these two different approaches yield comparable predictions...
Prevention of wellbore CO₂ leakage is a critical component of any successful carbon capture, utilization, and storage program. Sporosarcina pasteurii is a bacterium that has demonstrated the potential ability to seal a compromised wellbore through the enzymatic precipitation of CaCO₃. Here we investigate the growth of S. pasteurii in a...
Little research has investigated girls’ and college women’s reactions to non-objectified media images of women, including those that depict women in instrumental activities like playing a sport. This study examined open-ended responses to images of performance athletes, sexualized athletes, and sexualized models. Participants were 258 adolescent girls (ages 13-18) and...
Little research has investigated males’ reactions to non-objectified media images of women, including those that depict women in instrumental activities like playing a sport. Using a survey methodology, this study examined U.S. adolescent boys’ open-ended responses to images of performance athletes, sexualized athletes, and sexualized models. Participants were 104 adolescent...
With the advent of the open access and open data movement, the preservation and availability of data has multiplied exponentially. This increased distribution and sharing of data has energized numerous fields of research. In such an environment, librarians are increasingly tasked with finding actual data related to specific subjects in...
Library faculty are often tenure track, requiring a record of significant publishing and service before achieving tenure. However, meaningful tools and methods for evaluating the scholarship of librarianship frequently fall short of providing an accurate picture of the scholarship of any particular candidate. The authors conducted a case study analyzing...
This research investigated the longevity of functional connections between leaf traces and stem xylem in 16 species of conifers to better understand the spatial use of sapwood for water transport. The first question was which ring(s) stained when a vacuum was applied to the distal end of the cut surface...
Some authors defending the "hereditarian" hypothesis with respect to differences in average IQ scores between populations have argued that the sorts of environmental variation hypothesized by some researchers rejecting the hereditarian position should leave discoverable statistical traces, namely changes in the overall variance of scores or in variance-covariance relating scores...
Sequestering semi-polar compounds can be difficult with low-density polyethylene (LDPE), but those pollutants may be more efficiently absorbed using silicone. In this work, optimized methods for cleaning, infusing reference standards, and polymer extraction are reported along with field comparisons of several silicone materials for polycyclic aromatic hydrocarbons (PAHs) and pesticides....
1. Ecological communities can be relatively stable for long periods of time, and then, often as a result of disturbance, transition rapidly to a novel state. When communities fail to recover to pre-disturbance configurations, they are said to have experienced a regime shift or to be in an alternative stable state....
In a study of cumulative effects of riparian disturbance by grazing on the trophic structure of high desert trout streams, watersheds with greater riparian canopy had higher standing crops of rainbow trout Oncorhynchus mykiss, lower daily maximum temperatures (range, 16-23°C compared with 26-31°C), and perennial flow. Watershed aspect influenced the...
Yutian (Cry to Heaven) is the third Chinese stage adaptation of Harriet Beecher Stowe’s novel Uncle Tom’s Cabin between 1907 and 2007. The first, Heinu yutian lu (Black Slave’s Cry to Heaven) by Zeng Xiaogu, was staged by Chinese students in Tokyo in 1907; the second, Heinu hen (Regret of...
Twentieth-century land management has altered the structure and composition of mixed-conifer forests and decreased their resilience to fire, drought, and insects in many parts of the Interior West. These forests occur across a wide range of environmental settings and historical disturbance regimes, so their response to land management is likely...
The issue of permanent nondipole contributions to the time-averaged field lies at the very heart of
paleomagnetism and the study of the ancient geomagnetic field. In this paper we focus on paleomagnetic
directional results from igneous rocks of the southwestern U.S.A. in the age range 0–5 Ma and investigate
both...
Operational studies are necessary to support production and management decisions of forest industries. A time study (TS) approach is widely used in timber harvesting operations to understand the performance of individual harvesting machines as well as the entire system. However, several limitations of the TS approach include the use of...
In a simulator-defined MDP, the Markovian dynamics and rewards are provided in the form of a simulator from which samples can be drawn. This paper studies MDP planning algorithms that attempt to minimize the number of simulator calls before terminating and outputting a policy that is approximately optimal with high...
Sea surface temperatures (SST) and inorganic continental input over the last 25,000 years (25 ka) are reconstructed in the far eastern equatorial Pacific (EEP) based on three cores stretching from the equatorial front (~0.01°N, ME0005-24JC) into the cold tongue region (~3.6°S; TR163-31P and V19-30). We revisit previously published alkenone-derived SST...
The Cobb Seamount Chain in the northeast Pacific basin records the composition of the Cobb hot spot for the past 33 Myr, as the migrating Juan de Fuca Ridge approached and ultimately overran it ca. 0.5 Myr ago. In this first comprehensive geochemical study of the Cobb chain, major and...
Background:
Chromatin structure can control gene expression and can define specific transcription states. For example, bivalent methylation of histone H3K4 and H3K27 is linked to poised transcription in vertebrate embryonic stem cells (ESC). It allows them to rapidly engage specific developmental pathways. We reasoned that non-vertebrate metazoans that encounter a...
Despite its importance to biodiversity and ecosystem function, patterns and drivers of regional scale variation in forest structure and development are poorly understood. We characterize structural variation, create a hierarchical classification of forest structure, and develop an empirically based framework for conceptualizing structural development from 11,091 plots across 25 million...
Holocene turbidites from turbidite channel systems along the active tectonic continental
margins of the Cascadia Subduction Zone (offshore Vancouver Island to Mendocino Triple
Junction) and the northern San Andreas Transform Fault (the Triple Junction to San Francisco
Bay), have been analyzed for sedimentologic features related to their seismic origin. Centimeter...
The Asian vinegar fly Drosophila suzukii (spotted wing Drosophila [SWD]) has emerged as a major invasive insect pest of small and stone fruits in both the Americas and Europe since the late 2000s. While research efforts have rapidly progressed in Asia, North America, and Europe over the past 5 years,...
Monotonic and cyclic tests were carried out to determine strength and stiffness characteristics of 2.44 m (8 ft) long shear connections with 8 mm and 10 mm diameter self-tapping screws. The goal of this research is to compare test values of cross-laminated timber (CLT) diaphragm connections in seismic force-resisting systems...
We use Ar-40-Ar-39 incremental heating to fingerprint bulk fluvial sediment entering the northeast Pacific Ocean, with the long-term intent of tracking sediment source and transport changes from the terrestrial system to the marine environment through time. We show reproducible age spectra from individual rivers accounting for the majority of sediment...
The impetus for this Project began in 1968-1973 with birders at the Marine Science Center (MSC). But in the past 10 or so years the focus has shifted to a county group, Yaquina Birders & Naturalists. 120 individuals or couples have each contributed 100 or more records with 51% of...
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1-A. Introduction------------------------------------------353
1-B. History of 1968-1994 Lincoln
Diversity literary awards and other sources were used to create a list of high-quality titles written by and about underrepresented groups. This list was used to assess the diversity and inclusiveness of the library collections of a land-grant university. Gaps in the collection and acquisition processes were identified and will...