Stripe rust is a foliar disease of wheat (Triticum aestivum L.) caused by the air-borne fungus Puccinia striiformis f. sp. tritici and is present in most regions around the world where commercial wheat is grown. Breeding for durable resistance to stripe rust continues to be a priority, but also is...
Genetic variation in spring cold hardiness of shoots prior to bud break was studied in two Oregon breeding populations of Pseudotsuga menziesii var. menziesii (Mirb.) Franco, one on the west slope of the Cascade Mountains and the other in the Coast Range. In March and April 1993, and April 1994,...
Generating a contiguous, ordered reference sequence of a complex genome such as hexaploid wheat (2n = 6x = 42; approximately 17 GB) is a challenging task due to its large, highly repetitive, and allopolyploid genome. In wheat, ordering of whole-genome or hierarchical shotgun sequencing contigs is primarily based on recombination...
Developing new medical tests and identifying single biomarkers or panels of biomarkers with superior accuracy over existing classifiers promotes lifelong health of individuals and populations. Before a medical test can be routinely used in clinical practice, its accuracy within diseased and non-diseased populations must be rigorously evaluated. We introduce a...
Ideal values of bond angles and lengths used as external restraints are crucial for the successful
refinement of protein crystal structures at all but the highest of resolutions. The restraints in
common usage today have been designed based on the assumption that each type of bond or
angle has a...
Storm events can pulse nutrients and carbon from soils and provide an important subsidy to food webs in oligotrophic streams and lakes. Bacterial nutrient limitation and the potential response of stream aquatic bacteria to storm events was investigated in arctic tundra environments by manipulating both water temperature and inorganic nutrient...
As global climate changes over the next century, forest productivity is expected to change as well. Using PRISM climate and productivity data measured on a grid of 3356 plots, we developed a simultaneous autoregressive (SAR) model to estimate the impacts of climate change on potential productivity of Pacific Northwest (PNW)...
Ocean fronts represent productive regions of the ocean, but predator-prey interactions within these features are
poorly understood partially due to the coarse-scale and biases of net-based sampling methods. We used the In
Situ Ichthyoplankton Imaging System (ISIIS) to sample across a front near the Georges Bank shelf edge on two...
Eleven years (1932-1942) of electric potential and magnetic measurement at the Tucson observatory
represent a unique very long period magnetotelluric (MT) data set. We report here on a careful reanalysis of this
data using modern processing techniques. We have developed and used novel methods for separating out the
quasi-periodic daily...
Loading of cryoprotectants into oocytes is an important step of the cryopreservation process, in
which the cells are exposed to potentially damaging osmotic stresses and chemical toxicity.
Thus, we investigated the use of physics-based mathematical optimization to guide design of
cryoprotectant loading methods for mouse and human oocytes. We first...