The accessions used to create the Snap Bean Diversity Panel (SnAP) were 378 snap bean cultivars and germplasm lines selected from North American and European germplasm. This panel supplements the 150 member Bean CAP snap bean diversity panel (SBDP) with an additional 228 snap bean accessions. The Bean CAP SBDP...
A table containing data from random sampling plots in 87 randomly located aspen stands in northern Yellowstone, repeating measurements by Painter et al. (2014). Stands were relocated using GPS coordinates from 2012. Each stand contained one plot 2x30 m, extending from the live, dead or fallen tree nearest the GPS...
Dam removal is an important management tool for addressing aging infrastructure, public and structural safety, restoration of river connectivity for migratory organisms and recreation, and habitat quality. However, planning for dam removals is constrained by the difficulty of cost estimation. To our knowledge, published data on dam removal plans, total...
Drones, or unoccupied aircraft systems (UAS), have become increasingly accessible and a widely used tool across disciplines. Off-the-shelf drones have, for instance, popularized and advanced wildlife research by providing a privileged birds’-eye view for collecting high-resolution imagery for morphometric and behavioral sampling, which was otherwise costly or impractical. Biologically meaningful...
Data from mark-recapture study on cinnabar moths conducted at Cogswell Foster, OR, from 1986-05-29 through 1986-06-12. Data on captured and marked moths includes a number identifier, gender, wing wear (low, high), post-release behavior (mobile or immobile), capture/recapture locations (X/Y coordinates of study area, plot number, and categorical location relative to...
All the datasets used in Kovasi's (2022) masters thesis. Chapter 2: The datasets are elemental concentrations for 25 elements from samples of the saxicolous lichens Umbilicaria phaea (n = 51), Rhizoplaca melanophthalma (n = 20), and the epiphytic lichen Letharia vulpina (n = 16) from the southern Sierra Nevada and...
All of the data was collected at the FIGMENT art festival in New York City on June 23 and 24, 2018. The data was collected through: 1) paper survey for attendees to Guerilla Science activities, 2) short interviews (entry and exit) for attendees to Guerilla Science activities, and 3) short...
Bathymetry data (measurements of the elevations of submerged surfaces like the seafloor and lake beds) are an important factor in many scientific, economic, and engineering disciplines. Bathymetric surveys are widely used for benthic habitat mapping, flood inundation modeling, marine resource delineation, and nautical charting. While this ubiquity makes the generation...
This dataset is a collection of digital appendices for the PhD dissertation by Kellie T. Wall (2022), entitled "The 3.1 Ma to 100 ka Goat Rocks Volcanic Complex: Persistence and Evolution of Magmatism at a Long-Lived Major Andesite Locus on the Cascade Arc." Each appendix is a file (e.g. Word...
This dataset contains the data generated for a study to evaluate if institutional research data policies in the US support or encourage the FAIR principles (Wilkinson et al 2016). The data include a list of criteria developed for the analysis, and the reasoning behind the inclusion or exclusion of criteria...
This data provides observations and measurements used to answer questions of interest regarding how setback crosswalks at intersections affect driver behavior and intersection safety as part of the study titled “SPR840 Safest Placement for Crosswalks at Intersections.” Data includes measurements from the simulator portion of the study which gathered information...
These datasets were used in the prospective meta-analysis of northern spotted owl reproductive rates over 25 years across 11 study areas located throughout the range of the owl. A multi-state occupancy file was created by collapsing site-specific information on owl reproductive status into bimonthly (2 per month) survey occasions. These...
This dataset contains the chemical composition and reactivities of commercially used SCMs such as silica fume, Class-F and Class-C fly ashes, slags, and calcined clays. The dataset also includes the chemical composition and reactivity (where available) for several SCMs that are currently not specified in standard specifications by ASTM or...
This dataset provides the observations used to answer questions of interest regarding how intersection and traffic characteristics impact the frequency and severity of bicycle-vehicle conflicts as part of the field data analysis portion of the study titled "SPR 833 Intersection Treatments and Bicyclist Safety." Parameters such as bicycle-vehicle conflicts (measured...
This dataset includes the finite element models (FEMs) used for the MS Thesis entitled: Influence of Uncertainties in Terrestrial Laser Scanning on Structural Reliability and Bridge Load Rating by Carly K. Loving. These FEMs were created in SAP 2000
and contain models from both thesis manuscripts. The following lists summarizes...
All the datasets used in this masters thesis. Chapter 2: The datasets are elemental concentrations for 25 elements from samples of the saxicolous lichens Umbilicaria phaea (n = 51), Rhizoplaca melanophthalma (n = 20), and the epiphytic lichen Letharia vulpina (n = 16) from the southern Sierra Nevada and San...
The Joint Program Executive Office for Chemical, Biological, Radiological, and Nuclear Defense (JPEO-CBRND) began development of a broad-spectrum antiviral countermeasure against deliberate use of high-consequence viral hemorrhagic fevers (VHFs) in 2016. The effort featured comprehensive preclinical research, including laboratory testing and rapid advancement of lead molecules into nonhuman primate (NHP)...
This dataset consists of vascular plant species cover estimates collected from 12, 1x1-m quadrats, nested within 15x15-m plots that excluded and were open to wild ungulate access. The wild ungulate exclusion experiment was conducted in young forest plantations (<6 years old), each randomly assigned to one of 3 silvicultural herbicide...
These data were all collected in summer 2021 at Hinkle Creek watershed, a headwater ecosystem in a managed forest landscape in western Oregon. The data set has two components. The first component of the data set includes information about age 1 and older fish collected from two sections of the...
We report on geochemical data from anoxic sequences of the Nicobar Fan, recovered during International Ocean Discovery Program (IODP) expedition 362 to the Sumatra subduction zone. Analyses include strontium and carbon isotope composition of pore fluids, elemental and isotopic composition of carbonate concretions, and whole sediment analyses.
Plasmid transformation of chlamydiae has created new opportunities to investigate host–microbe interactions during chlamydial infections; however, there are still limitations. Plasmid transformation requires a replicon derived from the native Chlamydia plasmid, and these transformations are species-specific. We explored the utility of a broad host-range plasmid, pBBR1MCS-4, to transform chlamydiae, with...
Salmonid fish raised in hatcheries often have lower fitness (number of returning adult offspring) than wild fish when both spawn in the wild. Body size at release from hatcheries is positively correlated with survival at sea. So one explanation for reduced fitness is that hatcheries inadvertently select for trait values...
Dataset contains a 2015 partial re-measurement of the Blue Mountains Fire and Fire Surrogate study. 8 plots were measured from each of the 16 units, selected
randomly from all plots in each unit. Species are recorded using USDA plant codes, "UNKN" is unknown species. For fine fuels, 3 Brown's transects...
These datasets were used in the prospective meta-analysis of northern spotted owl reproductive rates over 25 years across 11 study areas located throughout the range of the owl. A multi-state occupancy file was created by collapsing site-specific information on owl reproductive status into bimonthly (2 per month) survey occasions. These...
Phytoplankton samples were collected from 5 upper Willamette Basin reservoirs in variable months during years 2013-2016 and 2019. Samples were collected from Blue River Reservoir, Cougar Reservoir, Fall Creek Reservoir, Lookout Point Reservoir, and Hills Creek Reservoir. The phytoplankton were identified and enumerated by Jim Sweet at Aquatic Analysts. Density...
The accessions used to create the Snap Bean Diversity Panel were 150 snap bean (Phaseolus vulgaris) cultivars and breeding lines selected from North American and European germplasm to create a population that is representative of the snap bean market class from a historical and geographical viewpoint. This panel was developed...
These high resolution (5x5-meter pixel) categorical models of land cover were created by training random forest classification models on
RapidEye (Planet Labs Inc.) satellite spectral data for each year and then predicting those models across the landscape. Training data were created by visually interpreting random plots over high resolution NAIP...
These data contain temperature readings from dataloggers launched in Deer Creek, Flynn Creek, and Needle Branch from 2006 to 2010. These loggers were apart of the Alsea Watershed Revisisted Study Revisited articles, but the data was incomplete due to logging gaps, temperature spikes, or other issues. The "Thermistor Functionality" datasets...
This dataset contains records of identified benthic and aquatic emergent invertebrates from pre-timber harvest, post-timber harvest, and reference (no harvest) collection sites in the Hinkle Creek watershed. A variety of fish-bearing tributaries, fishless tributaries, and mainstem creek sites were sampled. Benthic invertebrates were collected using Serber nets and emergent adults...
Historical forest harvesting practices were reviewed in the original Alsea Watershed Study where they found increased energy
loading to the stream and produced higher stream temperatures. This was an important early research site that led to the
development of contemporary forest management practices to protect water quality and fish habitat...
This dataset includes species richness of native plants, pollinators and birds as well as 13 proxies for ecosystem services representing timber production, culturally-valued plants and animals, and regulating services tied to forest productivity. The data were collected from an experiment conducted in the Oregon Coast Range USA that sought to...
These datasets were used in the prospective meta-analysis of northern spotted owl reproductive rates over 25 years across 11 study areas located throughout the range of the owl. A multi-state occupancy file was created by collapsing site-specific information on owl reproductive status into bimonthly (2 per month) survey occasions. These...
Plasma biochemistry and hematology reference intervals are integral health assessment tools in all medical fields, including aquatic animal health. As sablefish (Anoplopoma fimbria) are becoming aquaculturally and economically more important, this manuscript provides essential reference intervals (RI) for their plasma biochemistry and hematology along with reference photomicrographs of blood cells...
This dataset accompanies the manuscript Unintended consequences of selective water withdrawals from reservoirs alter downstream macroinvertebrate communities in Water Resources Research.
Benthic macroinvertebrates were collected from samples taken annually during the first two weeks of August from 2002-2007 and again in 2017 at six sites in the South Fork McKenzie...
Hyperspectral images were taken in a lab setting from wheat leaves and in situ from agricultural wheat fields and disease nursery. The goal of this research was to find infection of soilborne wheat mosaic virus in wheat for early detection using digital imagery, i.e., either hyperspectral or multispectral.
Isotope and stomach content data from piscivorous reservoir fishes collected from Hills Creek (isotopes; 43°40′16″N 122°25′33″W) and Lookout Point (isotopes and stomach contents; 43°53′48″N 122°43′34″W) reservoirs located on the Middle Fork Willamette River, Oregon. Additional details can be found in the related publication.
Isotope sampling was conducted under OSU Institutional...
High-resolution measurements of salinity, temperature, and partial pressure of carbon dioxide (pCO2) taken at Whiskey Creek Shellfish Hatchery, Netarts Bay, Oregon, from 2014 - 2019 are provided in this data set. Briefly, a permanently submerged pipe draws in bay water to supply the shellfish hatchery tanks. Unmodified water is branched...
This dataset compiles a list of universities classified as Doctoral Universities with very high research activity (R1) by the Carnegie Commission for Higher Education as well as their unique identifier. The dataset also lists whether or not an institutional research data policy exists, the internal classification number used by the...
European green crab, Carcinus maenas, trapped and collected in coastal Oregon and Washington coastal estuaries during the 2019. Data for individual crabs include: estuary, site, date of collection, sex, carapace width, weight, molt stage (color of abdomen), missing limbs, estimated year class, method of collection, and name of collector.
This...
The data is a JSON format file containing the position, velocity, and fish identifier data for 300 golden shiners in a shallow (depth of 4.5 to 5 cm) rectangular water tank (2.1 by 1.2 meters). There are 5000 individual frames (samples of position and velocity) corresponding to video taken at...
We examined long-term changes in daily streamflow associated with forestry practices with two datasets (this one and the original Alsea Streamflow dataset (1972) over a 60-year period (1959–2017) in the Alsea Watershed Study, Oregon Coast Range, Pacific Northwest, USA. In this contemporary period, 2006 to 2017 (12 water years), data...
Sea surface temperature (SST) was measured by several instruments deployed from the research vessel Sally Ride in the Bay of Bengal for the Monsoon Intraseasonal Oscillations in the Bay of Bengal (MISO-BOB) 2019 field experiment. This data set presents 1 minute averages of 3 m SST from the Scripps Institution...
Hyperspectral images were taken from March till October, 2018, of southwestern white pine (Pinus strobiformis), SWWP, seedlings of ten different seed-source families. Half of the seedlings were inoculated with white pine blister rust (Cronartium ribicola). Visual assessments of vigor coincided with hyperspectral data acquisition.
The aim of the experiment was...
Numbers of invertebrates (except family Carabidae) collected from pitfall and refuge traps in ten Annual Ryegrass fields in Linn County, Oregon between March 23, 2018 and June 20, 2019. Given are details on sampling date, site and trap ID, trap type, taxonomy (at least order level) and life stage.
These data set includes calibrated predictions of Depth, Velocity and Shear Stress for seven discharges (0.4 to 3.4m^3, equivalent to 0.12 Qbf to Qbf) at Oak Creek using the Flow and Sediment Transport with Morphological Evolution of Channels (FaSTMECH).
This dataset contains DNA sequence data of Oncorhynchus species, isolated from environmental DNA (eDNA) from Pacific Northwest streams via microfluidic eDNA metabarcoding and high-throughput (Ilummina) sequencing (samples collected from 2017-09-22 to 2017-10-10). It is accompanied by scripts and commands for data analyses including: sequence denoising, calculation of entropy values by...
These data were obtained from GPS radio collared mule deer from 2015-2017 in the John Day Basin. The dataets includes location data for used vs available predictor variable information for time since fire, juniper canopy cover, NDVI, and vegetation community for winter, summer:migratory, summer:resident seasonal ranges. The datasets were used...
We studied avian development in 49 species of temperate and 153 species of tropical New World passerine birds to determine how growth rates, and incubation and nestling periods, varied in relation to other life-history traits. We collected growth data and generated unbiased mass and tarsus growth rate estimates (mass n...
Numbers of carabid beetles, caterpillars, cranefly larvae and slugs collected from pitfall and refuge traps in ten Annual Ryegrass fields in Linn County, Oregon between March 23, 2018 and June 20, 2019. Given are details on sampling date, trap, size and sex (carabids only), weight (slugs only) and species (where...
This dataset includes the datasets of suspended sediment concentration and environmental variables used to model stream metabolism, and the modeled stream metabolism results for two streams. For more information, see Cargill, SK (2019). The Influence of Lithology on Stream Metabolism in Mountain Systems. MS Thesis, Oregon State University.