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| Abstract |
- The accessions used to create the Snap Bean Diversity Panel (SnAP) were 378 snap bean cultivars and germplasm lines selected from North American and European germplasm. This panel supplements the 150 member Bean CAP snap bean diversity panel (SBDP) with an additional 228 snap bean accessions. The Bean CAP SBDP was developed with support from the Common Bean Coordinated Agriculture Project (USDA-NIFA grant no. 2009-85606-05964). The accompanying data set contains information, where known, about pod traits and plant growth habit, USDA-NPGS Plant Introduction (PI) number, who bred the cultivar, market class and pod sieve size, plant variety protection (PVP) number and release date. The Bean CAP was a project to genotype and phenotype common bean diversity panels consisting of both dry and snap beans. The main phenotypic focus was on nutritional traits. However, with genotypic data in hand, the panel can be can be phenotyped for other traits and the combined genotypic and phenotypic data can be used for genetic analysis.
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| Related Items |
- • Myers, J., Wallace, L., & Moghaddam, S. M. (2019). BeanCAP snap bean diversity panel SNP data (Version 1) [Data set]. Oregon State University. https://doi.org/10.7267/M900P1589
- Arkwazee, H.A., L.T. Wallace, J.P. Hart, P.D. Griffiths and J.R. Myers. 2022. Genome wide association study (GWAS) of white mold resistance in snap bean. Genes 13(12), 2297; https://doi.org/10.3390/genes13122297
- Saballos A, Soler-Garzón A, Brooks M, Hart JP, Lipka AE, Miklas P, Peachey RE, Tranel PJ, Williams MM. 2022. Multiple Genomic Regions Govern Tolerance to Sulfentrazone in Snap Bean (Phaseolus vulgaris L.). Front Agron. 4:869770. doi:10.3389/fagro.2022.869770.
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| Funding Statement (additional comments about funding) |
- Funding sources that supported the collection of the data: USDA-NIFA-Bean CAP (2009-85606-05964), Baggett-Frazier Vegetable Breeding and Genetics Endowment
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| Additional Information |
- The diversity panel was assembled by asking vegetable seed companies with snap bean breeding programs to submit cultivars. A main selection criterion was that cultivars did not have current intellectual property protection. All cultivars had a release date that placed them outside of the 20 year window for Plant Variety Protection (PVP) or utility patents, or had been originally released without intellectual property constraints. The list of cultivars obtained from seed companies was supplemented by accessions available from the USDA-National Plant Germplasm System (NPGS). These were obtained by searching the Germplasm Resource Information Network (GRIN) database and requesting seed from NPGS. Additional cultivars and germplasm lines were sourced from the OSU snap bean breeding program from OSU historic lines maintained in the program as well as landrace and heritage varieties that had been accumulated by the program. Passport information associated with each accession came from several sources. The main source was the American Society of Horticultural Science (ASHS) Vegetable Variety Lists (https://cucurbit.info/vegetable-newsletters-descriptions/vegetable-cultivar-descriptions-for-north-america/) which was supplemented with information from accession entries in GRIN and from published PVP certificates (https://apps.ams.usda.gov/CMS/). Information about historic and heritage lines was also assembled from Seed Savers Exchange (2005). Garden Seed Inventory. Seed Saver’s Exchange, 3076; Hendrick, U.P., Tapley, W.T., Van Eseltine, G.P. & Enzie, W.D. (1931). The vegetables of New York: Beans of New York. New York Agr. Expt. Sta., J.B. Lyon Co., Albany, NY; Burr, F. (1865). The field and garden vegetables of America. JE Tilton and Company and Facciola, S. (1990). Cornucopia: a source book of edible plants. Kampong publications, Vista.
- Dataset documented by the article Celebioglu, B., J.P. Hart, T. Porch, P. Griffiths and J.R. Myers Phenotypic Variability for Leaf and Pod Color within the Snap Bean Association Panel (SnAP). Journal of the American Society for Horticultural Science (in review).
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