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  • TableS11_gene_differential-expression.txt

    Creator:
    Bredeweg, Erin L. and Freitag, Michael
    Abstract:
    Transcription factor (TF) genes were modified endogenously to include epitope tags for identification of TF protein binding sites by Chromatin Immunoprecipitation (ChIP), followed by high throughput sequencing. We used RNA-sequencing in carbon sources of sucrose, butyrate, and oleate in far-1, far-2, and a double far-1; far-2 mutant to find transcripts...

  • TableS10_MIPS-FAR2-RNAfiltered.xlsx

    Creator:
    Bredeweg, Erin L. and Freitag, Michael
    Abstract:
    Transcription factor (TF) genes were modified endogenously to include epitope tags for identification of TF protein binding sites by Chromatin Immunoprecipitation (ChIP), followed by high throughput sequencing. We used RNA-sequencing in carbon sources of sucrose, butyrate, and oleate in far-1, far-2, and a double far-1; far-2 mutant to find transcripts...
    Full Text:
    0.2 4.4 0.000284038 01.06 lipid, fatty acid and isoprenoid metabolism 72 7.98 NCU05967 NCU06032

  • TableS09_MIPS-FAR1-RNAfiltered.xlsx

    Creator:
    Bredeweg, Erin L. and Freitag, Michael
    Abstract:
    Transcription factor (TF) genes were modified endogenously to include epitope tags for identification of TF protein binding sites by Chromatin Immunoprecipitation (ChIP), followed by high throughput sequencing. We used RNA-sequencing in carbon sources of sucrose, butyrate, and oleate in far-1, far-2, and a double far-1; far-2 mutant to find transcripts...
    Full Text:
    NCU02184 NCU04796 NCU07626 759 7.54 1.710875332 2.41E-09 01.06 lipid, fatty acid and isoprenoid metabolism

  • TableS08_FAR2-GO_ChIP.xlsx

    Creator:
    Bredeweg, Erin L. and Freitag, Michael
    Abstract:
    Transcription factor (TF) genes were modified endogenously to include epitope tags for identification of TF protein binding sites by Chromatin Immunoprecipitation (ChIP), followed by high throughput sequencing. We used RNA-sequencing in carbon sources of sucrose, butyrate, and oleate in far-1, far-2, and a double far-1; far-2 mutant to find transcripts...
    Full Text:
    NCU03877 NCU01754 NCU06836 NCU04230 NCU02193 NCU01692 21 0.2 4.2 0.0003831059 01.06 lipid, fatty acid and

  • TableS07_FAR1-GO_ChIP.xlsx

    Creator:
    Bredeweg, Erin L. and Freitag, Michael
    Abstract:
    Transcription factor (TF) genes were modified endogenously to include epitope tags for identification of TF protein binding sites by Chromatin Immunoprecipitation (ChIP), followed by high throughput sequencing. We used RNA-sequencing in carbon sources of sucrose, butyrate, and oleate in far-1, far-2, and a double far-1; far-2 mutant to find transcripts...
    Full Text:
    1.419098143 0.0001266714 01.06 lipid, fatty acid and isoprenoid metabolism 73 7.75 NCU07761 NCU07430 NCU09138

  • TableS03_FAR1O_ChIP.xlsx

    Creator:
    Bredeweg, Erin L. and Freitag, Michael
    Abstract:
    Transcription factor (TF) genes were modified endogenously to include epitope tags for identification of TF protein binding sites by Chromatin Immunoprecipitation (ChIP), followed by high throughput sequencing. We used RNA-sequencing in carbon sources of sucrose, butyrate, and oleate in far-1, far-2, and a double far-1; far-2 mutant to find transcripts...
    Full Text:
    46.95599 6.33E-08 3.48E-08 -3352 sc04 NCU08042 + cellulose degradation regulator-2 12 - 1 2 2 3 2 2 3266

  • TableS02_FAR1B_ChIP.xlsx

    Creator:
    Bredeweg, Erin L. and Freitag, Michael
    Abstract:
    Transcription factor (TF) genes were modified endogenously to include epitope tags for identification of TF protein binding sites by Chromatin Immunoprecipitation (ChIP), followed by high throughput sequencing. We used RNA-sequencing in carbon sources of sucrose, butyrate, and oleate in far-1, far-2, and a double far-1; far-2 mutant to find transcripts...
    Full Text:
    62.19389 3.09E-06 1.68E-06 -3034 sc04 NCU08042 + cellulose degradation regulator-2 12 - 1 2 2 3 2 2 3265

  • Metadata_FARs.docx

    Creator:
    Bredeweg, Erin L. and Freitag, Michael
    Abstract:
    Transcription factor (TF) genes were modified endogenously to include epitope tags for identification of TF protein binding sites by Chromatin Immunoprecipitation (ChIP), followed by high throughput sequencing. We used RNA-sequencing in carbon sources of sucrose, butyrate, and oleate in far-1, far-2, and a double far-1; far-2 mutant to find transcripts...
    Full Text:
    Dissertation of Erin Bredeweg: “Transcriptional Networks Controlled by the Fatty Acid Regulators, FAR-1 and FAR

  • TableS06_FAR2O_ChIP.xlsx

    Creator:
    Bredeweg, Erin L. and Freitag, Michael
    Abstract:
    Transcription factor (TF) genes were modified endogenously to include epitope tags for identification of TF protein binding sites by Chromatin Immunoprecipitation (ChIP), followed by high throughput sequencing. We used RNA-sequencing in carbon sources of sucrose, butyrate, and oleate in far-1, far-2, and a double far-1; far-2 mutant to find transcripts...
    Full Text:
    8387285 23.54994 8387011 8387285 23.54994 3.50E-06 -127 sc01 NCU03031 - tricarboxylic acid-13 10 - 1 1 3 2

  • TableS04_FAR2S_ChIP.xlsx

    Creator:
    Bredeweg, Erin L. and Freitag, Michael
    Abstract:
    Transcription factor (TF) genes were modified endogenously to include epitope tags for identification of TF protein binding sites by Chromatin Immunoprecipitation (ChIP), followed by high throughput sequencing. We used RNA-sequencing in carbon sources of sucrose, butyrate, and oleate in far-1, far-2, and a double far-1; far-2 mutant to find transcripts...