The purpose of this capstone is to provide a reassessment of the emergence of biophilia in interpretive programs conducted in California State Parks. More specifically, this project examines what effect natural resource interpretive programming has on the emergence of biophilia practices and if participants are more likely to be more...
2020 and 2021 brought the first reported outbreaks of salmonellosis epidemiologically linked to dry bulb onions in the United States. Outbreak investigations were not able to implicate a specific source of the contamination but speculated that contaminated water was a significant contributor. The Produce Safety Rule established minimum standards for...
Distributed version control allows developers to manage software evolution among distributed development teams. But it does not eliminate all consistency and concurrency issues, and instead introduces additional complexity when merging code. And resolving merge conflicts is nontrivial when automated merging fails. In such cases, developers are forced to inspect the...
Outdoor School for All! Student Outcomes in Oregon is an ongoing evaluation project of outdoor schools throughout Oregon. The intent of this project is to build understanding and knowledge about the outcomes of outdoor school programming and support program improvement. We built an evaluation system based on legislative requirements, ongoing...
Explainable Artificial Intelligence (XAI) systems aim to improve users’ understanding of AI but rarely consider the inclusivity aspects of XAI. Without inclusive approaches, improving explanations might not work well for everyone. This study investigates leveraging users’ diverse problem-solving styles as an inclusive strategy to fix an XAI prototype, with the...
There is a growing need for individualized instructional designs in 4-year institutions due to: 1) growing undergraduate enrollment trends across the U.S., 2) broader diversity in students backgrounds, and 3) the growing prevalence of asynchronous remote learning. With the growth in computer technology in education, tools such as adaptive intelligent...
Autonomous robotic agents are on their way to becoming in-home personal assistants, construction assistants, and warehouse workers. The degree of autonomy of such systems is reflected by the manner in which we specify goals to them; the abstraction of low-level commands to high-level goals goes hand-in-hand with increased autonomy. In...
A variety of important machine learning applications require predictions on test data with different characteristics than the data on which a model was trained and validated. In particular, test data may have a different relative frequency of positives and negatives (i.e., class distribution) and/or different mislabeling costs of false positive...
Oregon's estuaries are important ecosystems for scientific study. Consequently, knowledge of what research has been conducted helps us identify benchmarks and plan new projects. A comprehensive bibliography of published research, technical reports, local documents, and data sets is one means of recording this knowledge. For these reasons, the Guin Library...
Oregon's estuaries are important ecosystems for scientific study. Consequently, knowledge of what research has been conducted helps us identify benchmarks and plan new projects. A comprehensive bibliography of published research, technical reports, local documents, and data sets is one means of recording this knowledge. For these reasons, the Guin Library...
Climate change is impacting a wide range of global systems, with polar ecosystems experiencing the most rapid change. While climate impacts affect lower trophic level and short-lived species most directly, it is less clear how long-lived and mobile species will respond to rapid polar warming, as they may have the...
The utility of high-throughput, computational screening has become an invaluable asset to the field of materials science. In the hierarchy of computational methods, the most accurate methods are often the most computationally expensive. However, as both the efficiency and fidelity of numerical techniques advance, high-quality screening of large materials datasets...
Rhizopus microsporus is a globally ubiquitous opportunistic human and plant pathogen that is known to harbor endosymbiotic bacteria. Differences between populations of clinical and environmental R. microsporus isolates have yet to be assessed on a global scale. Whole-genome sequence data were used to explore fungal biology and to assess potential...
Multiagent learning offers a rich framework to address challenging real-world problems such as remote exploration and healthcare coordination, which require autonomous agents to express elaborate interactions. To be effective in such systems, agents must collectively reason about and pursue high-level, long-term, and possibly nebulous objectives while adapting their strategy to...
Quantum mechanics is increasingly being taught with a spins-first approach where instructors use simple spin systems to introduce the principles of quantum mechanics rather than systems with wavefunctions. One of the defining characteristics of a spins-first approach is that systems studied have discrete bases, whereas systems with wavefunctions have continuous...
A new approach is described that offers a risk-informed performance-based (RIPB) framework for quantifying the risk associated with a cyber-attack on a nuclear power generating facility.
The first part of the method involves 1) the creation of a simplified 10 CFR 73.54 compliant cyber infrastructure, 2) modeling of design basis...
Over time, Open Source Software (OSS) has become indispensable in the creation and upkeep of software products, serving as the fundamental building block for widely used solutions in our daily lives, including applications that enable communication, entertainment, and productivity. A sustainable OSS ecosystem is one that attracts and retains a...
The HENRI system was developed to narrow the pulse width of TREAT from 89 ms to below 60 ms with the goal of improving the test reactor's ability to simulate RIAs in LWRs by rapidly injecting helium-3, a strong neutron poison, into the core. A coupled model using the CFD...
Concrete has been categorized as a key contributor of CO2 (carbon) emissions into the atmosphere. This is mostly associated with the production of ordinary portland cement (OPC). The concrete and cement industries are pursuing a path to reduce their carbon emissions generally in accordance with the climate change goals outlined...
In the past fifty years, per- and polyfluoroalkyl substances (PFASs) have become alarming global pollutants. In 2019, the United States (U.S.) Environmental Protection Agency (EPA) ultimately classified them as emerging contaminants and established an action plan to address PFAS and protect public health through developing, identifying, monitoring, and remediating current...
The effects of priming complex schemas within the context of one’s social group are understudied, and it is unknown whether activating these schemas can have temporary impacts on how we identify within our social group. I investigated how a set of dynamic primes intended to activate complex schemas (i.e., academic...
Wildfire management networks allow for collaborative intervention in mitigating the ever-present risk of major wildfire events. This thesis consists of two manuscripts that explore the topology and characteristics of wildfire management networks and their ability to influence wildfire severity in social-ecological systems. The first manuscript focuses on the characteristics of...
As global atmospheric carbon emissions continue to rise, scientists and land managers are increasingly looking to natural ecosystems to sequester and store carbon to buffer the impacts of climate change. Despite their small geographic size, many coastal ecosystems such as salt marshes, seagrass meadows, and mangroves sequester large amounts of...
Just off the coast of the Pacific Northwest lies the Cascadia Subduction Zone (CSZ); odds of a very large CSZ earthquake occurring in the next 50 years is estimated to be about 37%. A CSZ seismic event has the potential to cause wide scale damage not just to the power...
Ocean deoxygenation is predicted to increase in severity over the next few decades, posing a threat to marine life and fishing economies. Improved predictions of ocean deoxygenation depend on a better understanding of the biogeochemical mechanisms that underly this process. Within the realm of biogeochemical mechanisms, this project specifically investigated...
Falling Into Place: Relational Perspectives on the US Creative Residency Field is an Environmental Arts & Humanities thesis built around a research project called Creative Residencies and Expanded Senses of Community: Interviews With Artists & Residency Leaders. It’s an extended meditation on arts residencies via research, interviews, and experiential learning,...
The coronavirus pandemic and its associated public health response resulted in disruptions in daily life as well as financial and other insecurities. This corresponded with an increase in adverse mental health outcomes in adolescents in the United States, including a temporary increase in suicidal ideation and behaviors. The pandemic also...
This dissertation delves into understanding, characterizing, and addressing dataset shift in deep learning, a pervasive issue for deployed machine learning systems. Integral aspects of the problem are examined: We start with the use of counterfactual explanations in order to characterize the behavior of deep reinforcement learning agents in visual input...
Weight-based stigmatization (WBS) exists in healthcare and can be categorized as direct, indirect, or structural. WBS is harmful to individual’s health and contributes to worse healthcare engagement, including reduced care satisfaction, patient-centered communication (PCC), and utilization of services. Little is known about young adults’ experiences of WBS in healthcare. Young...
The body of work aims to contribute to the area of Quantitative analysis in Environmental Sciences, and is focused on the microbiome. The underlying theme for the dissertation is methods and workflow. The unique bioinformatics workflow used for the analysis of genomic data was used to answer distinct and pressing...
Deep learning is now being utilized widely in applications where sensitive data is being used for model training, for example, in health care. In this scenario, any data leakage will cause privacy concerns to whose data records are used to train the model. An attacker can actively cause privacy leakage...
Rates of sediment transport were determined using tracer gravel and a RFID antenna array at Oak Creek (Oregon) to compare a new method with an existing transport relation created from data previously collected in the same study reach. Close to 3,000 tracers were deployed throughout the study reach and were...
Oxidative dysfunction can affect dairy animals during periods of heightened stress, particularly during the transition from pregnancy to lactation and during diseases, such as intramammary infection (IMI), and can contribute to increased inflammation, immune dysfunction, and cell death. As such, methods for ameliorating oxidative stress and restoring redox regulation may...
Consistent with its charge under Oregon House Bill 3543, the Oregon Climate Change Research Institute (OCCRI) conducts a biennial assessment of the state of climate change science, including biological, physical, and social science, as it relates to Oregon and the likely effects of climate change on Oregon. This sixth Oregon...
Pasteurization is an effective method of reducing risks associated with foodborne pathogens in raw milk. Cheese made from raw milk has a higher potential to harbor harmful bacterial pathogens. However, some cheesemakers prefer to use unpasteurized milk to preserve the natural microflora present in the raw milk and to prevent...
The focus of this thesis is to design, characterize, and apply novel computational methods and molecular systems to interrogate heterogeneous human gut microbiome-related phenomena. In Chapter 2, I design, implement, and characterize a method for embedding co-occurrence patterns derived from massive 16s amplicon datasets. I use this method to 1....
For my CSSA portfolio, I developed a graduate-level education course about disability in the United States and in higher education. In this paper, I will provide an introduction to my life and work in disability support services, and how my experience as a disability support services professional and graduate student...
North American bighorn sheep (Ovis canadensis) have experienced significant declines and population extirpations due to novel pathogens such as Mycoplasma ovipneumoniae. This disease continues to limit the population restoration of bighorn sheep. Therefore, understanding the demographic consequences of pathogen presence and the risk of contact between bighorn populations and potential...
Flavored milk is a growing category for dairy products; however, it is a perishable product that is subject to microbial spoilage which can lead to a negative consumer experience and lead to lost sales. Flavored milk processors communicated unique spoilage events related to their products, including color loss of strawberry...
This thesis focuses on the fundamental behavior of CLT floor-to-wall connections during a fire.
Cross-laminated timber (CLT) panelized structures rely on floor-to-wall connections for the load path and stability of the structure. Additionally, the fire performance of these connections is critical to prevent horizontal or vertical fire spread within these...
Severe wildfires are increasing in the western United States, impacting vegetation structure, and in turn, forest regeneration conditions. These wildfires are also raising a substantial amount of scientific and management concern regarding the resilience of forested ecosystems, or the ability of the ecosystem to return to a pre-fire condition. This...
In communities impacted by climate disasters, institutions largely determine the distribution of outcomes within a population. This research aims to examine the role of institutions in differential outcomes for displaced communities impacted by the 2020 Labor Day Wildfires in the Santiam Canyon and the Rogue Valley. Using semi-structured interviews of...
Many home users nowadays use various smart devices to improve the efficiency and convenience of their home environments. Trigger-action platforms such as “If-This-Then-That” (IFTTT) enable end users to connect different smart devices and services using simple apps to control these devices and automate the tasks (e.g., if the camera detects...
The Common Core State Standards for Mathematical Practice (SMPs) describe ways of thinking and doing mathematics that parallels how mathematicians engage with mathematics (National Governors Association for Best Practices, 2010). These standards reflect a broader goal in K-12 mathematics education focused on moving beyond K-12 learners acquiring knowledge of mathematical...
Hop (Humulus lupulus L. var. lupulus) is a diploid, dioecious plant with an extensive history of cultivation and use in brewing, as a textile, and for its therapeutic properties. Hop is prized for its ability to produce a variety of aromatic and flavor compounds, as well as compounds with anti-microbial...
In this dissertation I explore the Arms representation and activities for teaching quantum mechanics invented at Oregon State University. In the Arms representation students embody quantum states. The Arms activities are presented as an exemplar of the unique physics classroom culture of the upper-division Paradigms in Physics program. In the...
Managers of forest and plantation ecosystems are encountering growing problems involving plant pathogens and the expanding geographic ranges of these pathogens. Historically unexposed stands are exceptionally vulnerable when a non-native pathogen is introduced because these pathogens can cause devastating disease in a host population that lacks co-evolved resistance mechanisms. One...
Back pain is the leading cause of disability worldwide, entailing a significant socioeconomic impact. A primary source of back pain can be attributed to intervertebral disc (IVD) degeneration allowing nerve ingrowth, facet joint arthritis, disc bulging, and osteophyte formations that press on nearby nerve roots or the spinal cord. While...
Structural engineered wood manufacturers need a quantitative measurement technique to determine the ratio of wood to adhesive failure in their shear specimens. Visual estimation of percent wood failure has long stood as an extremely subjective quality control approach according to ASTM D5266 – Standard Practice for Estimating the Percentage of...
Third-party caregivers – that is, non-parent caregivers who care for children in some capacity – are very valuable in supporting the healthy development and wellbeing of children and families (Bronfenbrenner, 1990). Two populations of third-party caregivers – home-based childcare educators (HBCCs) and foster caregivers (FCs) – both currently face challenges...
Asians are a minority group that are scarcely represented throughout Hollywood and the film industry. Even when there is some type of inclusion, they are often subjected to stereotypes that have been perpetuated for decades. This contributes to shaping how Asian and Asian Americans are perceived, as well as the...
In the face of the global climate crisis, paired with current and future risks over water resources, the importance of effective water resources management cannot be overstated. However, there is a significant lack of specific metrics used to track water stewardship on a broad scale. Thus, in order to track...
Water electrolysis plays a pivotal role in achieving a green hydrogen economy by sourcing electricity from intermittent renewable sources. However, the efficiency of the electrolysis process is limited by the sluggish oxygen evolution reaction (OER) kinetics, whereas the kinetics of the hydrogen evolution reaction (HER) are more facile. This thesis...
The accelerated development in water-energy systems calls for advanced modeling and optimization tools to improve technologies’ performance. Water desalination is a manifestation of water-energy system that is challenged by different operational constraints. The scarcity and uneven distribution of freshwater around the world makes water desalination an indispensable process to address...
By studying gravitational waves, we can gain new insights into the merging events between massive objects such as black holes as well as neutron stars. Moreover, studying low-frequency waves allows us to observe merging events between supermassive black holes at the centers of galaxies, which in turn allows us to...
There is a growing need for an expanded Probabilistic Risk Assessment (PRA) framework that is able to accommodate new uncertainties that are present in Generation 3+ reactor designs. Dynamic PRA (DPRA) can allow for a more realistic risk assessment by taking advantage of established nuclear simulation codes to drive Dynamic...
Cancer-related fatigue (CRF) disproportionately effects hematologic cancers when compared to solid tumor malignancies. Self-management of CRF has received increasing attention in solid tumor cancers, however, fatigue self-management in hematologic cancers has received significantly less systematic investigation. The purpose of this research was to determine effective strategies for self-managing fatigue across...
Ethical and training standards across counseling-related professions contain competencies related to race and ethnicity as necessary research and practice components. One such counseling-related sub-specialty is Play Therapy, which acknowledges that professionals utilizing play therapy techniques must consider racial and cultural context, trauma, and intersectionality when working with children. However, there...
As one of the most popular data types, the point cloud is widely used in various appli- cations, including computer vision, computer graphics and robotics. The capability to directly measure 3D point clouds is invaluable in those applications as depth information could remove a lot of the segmentation ambiguities in...
Students with disabilities are not being afforded the same access to sporting opportunities as their peers without disabilities. The purpose of this dissertation was to build on a foundation of information regarding collegiate adaptive sports through a Critical Disabilities Studies lens. Specific aims included: (1) identifying and describing intercollegiate, adaptive...
1. Ecologists, outdoor professionals and the public work and play in lands with complex histories. Part of decolonizing our professional and recreational practices is to expose settler colonial biases and recognize the histories of colonized lands and the peoples who have stewarded these lands for millennia prior to colonization.
2....
Desalination stands for removing salt from saline water, and produce freshwater. Desalination technologies have been envisioned as a potential solution for freshwater production from oceans as an immense source of water acquiring 97% earth’s water, and 75% of earth’s surface. However, one third of world’s population face water scarcity every...
The umbrella species concept is a single-species conservation strategy built on the notion that indirect protections are provided for multiple species that occupy the same area as a single, or umbrella, species. The utility of the umbrella species concept relies on similar associations of abundance, distribution, life history requirements, and...
Headwater streams in the Oregon Coastal Range are subject to drastic fluctuations in flow and temperature because of the changing seasonality of a Mediterranean climate. In response to these changes, stream fishes exhibit a variety of movement patterns. Coastal Cutthroat Trout (Oncorhynchus clarkii clarkii) have evolved an assortment of life...
The last two years of the Covid-19 pandemic have brought significant changes to global and American societies, as well as to our healthcare system. Millions of Americans were laid off and left without insurance, some areas of medicine suffered financial catastrophe with a fall in patient volumes, others were victims...
Visual hindsight bias, also known as the “saw-it-all-along” effect, is the tendency to overestimate one’s perceptual abilities with the aid of outcome knowledge. The present study investigated visual hindsight bias for facial stimuli. Experiment 1 adopted the visual hindsight bias paradigm from Harley et al. (2004) and replicated their findings...
The practice of modern silviculture on U.S. public lands has been stymied by a legacy of litigation and policy changes since the late 20th century. Forestry in the 1980s was focused on physical science strategies and failed to consider the social complexities of multi-use forest management. Emblematic of the challenges...
In computer science, learning abstract fundamental programming concepts requiring students to understand memory management can be very difficult and lead to misunderstandings that carry on into advanced topics. This is especially true in data structures with abstract data types. Understanding how novice students think and reason about data structures is...
The Klamath River Basin (KRB) is one of the most contested basins of the Western U.S. with respect to water. Multiple stakeholders, including Tribes, farmers, state and federal agencies, and environmental advocates, are in frequent conflict over water rights and water use. Removal of the four hydroelectric dams is one...
We live on an Urban Planet. The current unprecedented urbanization is accompanied by intensive land cover transition and demographic shifts from rural to urban livelihoods. Cities serve as cultural, economic, political centers that facilitate wealth creation and innovation of the society, sustaining human from multi-dimensions with large ecological footprints far...
The early care and education workforce, including those who work in center- and home-based child care (HBCC) settings, is situated within outside systems of child care supports and resources. Some outside system components serve to support compliance with regulatory guidelines (e.g., child care licensing: health and safety protocols, minimum training...
The goal of this thesis is to ease the adoption of energy-efficient (EE) building strategies for affordable homes in the United States (US). Low-wage earning households spend nearly three times the proportion of their gross annual income on home energy bills resulting in higher energy burden for them when compared...
Given the many significant roles that bacteria play in modern food manufacturing, it is crucial that we have a fundamental understanding of how bacterial communities assemble and behave in the food manufacturing environment. The focus of this dissertation was to investigate both the spatial and temporal distributions of microbial communities...
Sodium Cooled Fast Reactors (SFR) are complex and expensive due to high operating temperatures and neutron flux which pose technical challenges for these reactors. To overcome these challenges with SFRs, research and development of small scale and large-scale facilities are needed to bridge the gap in understanding. Scaling analyses develop...
The introduction of non-native species can negatively impact native species through reduced genetic fitness resulting from hybridization. The lack of spatiotemporal data of hybrids occurrences makes assessing hybridization risk difficult. Here, I developed a spatially-explicit GIS Hybridization Risk Model (HRM) between native ESA-listed Bull Trout and introduced Brook Trout by...
The production of carbon and export to deep ocean sediments is linked to carbon partitioning between the ocean and atmosphere and is a key driver of climate change over the glacial-interglacial transition. Yet conflicting reconstructions create barriers to understanding changes to the carbon system over this important climate transition. Production...
The variety of natural disasters provide different sets of characteristics and properties with unique challenges. One significant difference between hazard types is prewarning lead time, the amount of time individuals have from a potential warning to the disaster occurring. Rapid onset disasters may not provide an official warning about a...
The operation of gas turbine engines depends on the reliable ignition of fuel/air mixtures. Gas turbine engines are commonly used as commercial and military aviation power plants. However, consistent ignition within gas turbine engines is still a problem, especially for more challenging operating conditions such as emergency operations. This work...
How the direct and indirect effects of species interactions cascade to affect community structure, functioning, and stability is a fundamental question in ecology. In temperate kelp forests, species interactions, in conjunction with environmental processes, produce rich spatiotemporal dynamics.
Arguably the most dramatic of these are abrupt shifts in community state,...
Learning assistant (LA) programs are gaining increasing popularity as a means to shift instructional practice in STEM classrooms. In these programs, trained undergraduate students join the instructional team and support student-centered active learning pedagogies. Their professional development is typically supported through a seminar. In facilitating small group collaborative learning, LAs...
Even in remote environments, human and natural systems are connected. Pressing environmental and social changes warrant the field of science to not only continue to enhance understanding of the natural world, but also consider the socio-ecological implications of research in the coupled human-natural system. Additionally, a need exists for communication...
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Kim S. Bernard
Even in remote environments, human and natural systems are connected
Nutrigenomics is a branch of nutrition that seeks to elucidate the relationship between dietary components and expression of genes. Certain bioactive compounds present in the diet have the potential to modulate transcription of genes through their interactions with ligand-dependent nuclear receptors, a series of transcriptional regulators capable of sensing intracellular...
Queer students in American public schools may face significant challenges including unsupportive or hostile peers or staff members (Eisenberg et al., 2017). The culture of rural Southern schools may be particularly challenging for these students as they are less likely to have an active support group and more likely to...
Ecological domains seeking to understand the environment and the behavior of species have received little attention in machine learning (ML), despite the fact that environmental changes have a significant impact on humans as well as ecosystems. Some ecological problems can be formulated similarly to other common ML applications, but there...