The bacteria colonizing geologic core sections (attached) were contrasted with those found suspended in the groundwater (unattached) by examining the microbiology of 16 depth-paired core and groundwater samples using a suite of culture-independent and culture-dependent analyses. One hundred twenty-two meters was continuously cored from a buried chalcopyrite ore hosted in...
Over the continental shelf at 15°S off Peru, sigma-t is a well-defined
function of temperature (Figure 1) and hence temperature alone may be used
to monitor the changes in stratification, to test the thermal wind equation,
and to monitor the hydrographic response to wind events. In this report we
present...
Green sea turtles, Chelonia mydas, have endangered and threatened populations globally, but several populations show signs of population recovery. In Hawaii, nesting female green turtles have increased 5.7% year⁻¹ since 1973, but wide fluctuations in census counts of nesting females make recovery diagnosis difficult. For effective management planning, it is...
With over 800 languages spoken on the continent of
Africa, inter-cultural communication has always been difficult.
In addition, many of the peoples of Africa have
experienced colonial oppression. Various powers have
sought to interfere with intra-cultural dialogues and the
free flow of information. Their effectiveness, however,
was limited because of...
Whole blood selenium levels were measured in 207 horses, representing 41 ranches and 11 regions throughout Oregon. Age, sex,
diet, and history of disease were recorded. Diet was divided into
three categories; local feed only, commercial feed, and Se supplemented feed. Region (p<.01), diet type (p<.01), and a region x...
In twentieth century America, women continue the age-old struggle for recognition
as whole, intelligent individuals, not just an "other," less hearty, less deserving
or less capable being than man. Sarah Grimke spoke of the inequalities over 150 years
ago during the abolitionist movement when she compiled her major arguments into...
Authentic assessment of visitor learning in museum settings is a challenging
endeavor. Evaluation literature includes very few studies that link adult visitors' behavior
to their learning. Multiple data collection methods in a naturalistic environment hold
great promise for increasing understanding of informal public education.
In 1997, Oregon State University's Hatfield...
Adult dusky Canada geese (Branta canadensis
occidentalis Baird) were banded with plastic neck bands and
observed on the winter range during 1985-92. Annual
survival rates of adult geese estimated from observation
data ranged from 76% to 85%. A model of Canada goose
population dynamics was developed to illustrate
relationships between...
Soil organic matter (SOM) is the terrestrial biosphere's largest pool of organic carbon (C) and is an integral part of C cycling globally. Soil organic matter composition typically can be traced directly back to the type of detrital inputs; however, the stabilization of SOM results as a combination of chemical...
The controversial condition of carbohydrate craving is believed by some
researchers to be a defect in the regulation of food intake by an individual.
This defect is believed to be responsible for the inability of some persons to
control their food intake and therefore their weight. Research was conducted
to...
The purpose of this research was to examine some of
the factors which may affect body composition of
postmenopausal women. The effect of estrogen, physical
activity, diet and lifestyle were examined in 9 women
receiving estrogen replacement therapy and 11 women not
using this drug. For 3 consecutive days, the...
The travel cost method of deriving demand and value of recreation
does not include fixed costs of recreational durable goods purchases
or allow for supply restrictions on the number of suitable
sites available. The omission of these two real-world situations
results in derivation of demand curves which are more inelastic...
Two-year old Douglas-fir (Pseudotsuga menziesii (Mirb.) Franco) seedlings from two seed lots of different predicted hardiness levels were grown in two separate nurseries. Seedlings were lifted every four weeks from early October 1991 through March 1992 and exposed to controlled freezing temperatures. Fluorescence emissions of the seedlings were measured prior...
Phosphorodiamidate morpholino oligomers (PMOs) are novel antisense drugs in the early stages
of development. These synthetic DNA mimics contain the same bases found in DNA and anneal
to RNA in a complementary fashion. PMOs have been designed that target genes responsible for
producing essential proteins in organisms such as Escherichia...
In 1992, amendments to the Fishing and Aquaculture Law required rural communities
to organize into syndicates or cooperatives and to create resource management plans.
Once the Chilean Fisheries Service (SERNAP) approves these plans, villages could manage designated subtidal and intertidal areas. In response to these amendments, two villages, Puerto Aldea...
One of the most commonly diagnosed illnesses in the elderly population is cancer. Despite research to explain the consistent increase in incidence rates with age, the mechanisms are largely unknown. In order to explore the patterns in age-specific cancer incidence through visualization, tables and graphs were generated via SEER*stat of...
Submillimeter depth distributions of total dissolved inorganic carbon (DIC) were derived from pH and PCO2 profiles measured with microelectrodes in an organic-rich, laboratory-maintained sediment. The DTC profiles were used to calculate diffusive fluxes of DIC across the sediment-water interface. In two experiments, the calculated diffusive fluxes fell within ±50% of...
Published May 1985. Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog
Embryonic diapause is a reproductive strategy widespread in the animal kingdom. This phenomenon is defined by a temporary arrest in blastocyst growth and metabolic activity within a quiescent uterus without implantation until the environmental and maternal milieu become favorable for pregnancy to progress. We found that uterine Msx expression persists...
Embryonic diapause is a reproductive strategy widespread in the animal kingdom. This phenomenon is defined by a temporary arrest in blastocyst growth and metabolic activity within a quiescent uterus without implantation until the environmental and maternal milieu become favorable for pregnancy to progress. We found that uterine Msx expression persists...
Full Text:
Jeeyeon Cha‡1, Kristin E. Burnum-Johnson§1, Amanda Bartos‡, Yingju Li‡, Erin S. Baker§, Susan C. Tilton
Recent studies have suggested that the marine contribution of methane from shallow regions and melting marine-terminating glaciers may have been underestimated. Here we report on methane sources and potential sinks associated with methane seeps in Cumberland Bay, South Georgia's largest fjord system. The average organic carbon content in the upper...
Spring Chinook Salmon Oncorhynchus tshawytscha are transported above dams in the Willamette River to provide access to blocked spawning habitat. However, 30–95% of these transplants may die before spawning in some years. To varying degrees, salmon in other tributaries—both blocked and unblocked—have similar prespawn mortality (PSM) rates. Our study determined...
Violations of one or more of the assumptions made In analysis of
variance (ANOVA) or linear regression analysis may lead to erroneous
results. Often data will not conform to the assumptions implicit in the
analyses, but transforming the data to a different scale may lead to an
appropriate model. Before...
Birth defects may influence the risk of childhood cancer development through a variety of mechanisms. The rarity of both birth defects and childhood cancers makes it challenging to study these associations, particularly for the very rare instances of each. To address this limitation, the authors conducted a record linkage-based cohort...
Adverse effects on mechanical properties from using a supercritical fluid (SCF) to increase preservative penetration of refractory woods were evaluated by treating small ponderosa pine sapwood specimens with supercritical carbon dioxide at 64 combinations of temperatures (35 to 80 C), pressure (1,000 to 4,000 psig), and time (0.5 to 2...
The U.S. Commission on Ocean Policy (USCOP) has articulated a set of overarching Guiding Principles to frame the creation of a new national ocean policy. When taken collectively, these principles provide a careful, circumspect, and ambitious context from which to develop policies that will promote vibrant coastal communities, healthy and...
Background: High birthweight is an established risk factor for childhood leukaemia.
Its association with other childhood cancers is less clear, with studies hampered by low
case numbers. Methods: We used two large independent datasets to explore risk associations between
birthweight and all subtypes of childhood cancer. Data for 16 554...
Background: High birthweight is an established risk factor for childhood leukaemia.
Its association with other childhood cancers is less clear, with studies hampered by low
case numbers. Methods: We used two large independent datasets to explore risk associations between
birthweight and all subtypes of childhood cancer. Data for 16 554...
Full Text:
sex) and excluding cases and controls from the California dataset.
e Cancers which were
Background: High birthweight is an established risk factor for childhood leukaemia.
Its association with other childhood cancers is less clear, with studies hampered by low
case numbers. Methods: We used two large independent datasets to explore risk associations between
birthweight and all subtypes of childhood cancer. Data for 16 554...
Background: High birthweight is an established risk factor for childhood leukaemia.
Its association with other childhood cancers is less clear, with studies hampered by low
case numbers. Methods: We used two large independent datasets to explore risk associations between
birthweight and all subtypes of childhood cancer. Data for 16 554...
Full Text:
*† Michael FG Murphy,2,4† Kathryn J Bunch,3,4
SusanE Puumala,5 SusanE Carozza,6 Eric J Chow,7 Beth A
Background: High birthweight is an established risk factor for childhood leukaemia. Its association with other childhood cancers is less clear, with studies hampered by low case numbers. Methods: We used two large independent datasets to explore risk associations between birthweight and all subtypes of childhood cancer. Data for 16 554...
Research on community forests, primarily governed and managed by local forest users, in the United States is limited, despite their growth in numbers over the past decade. We conducted a survey to inventory CFs in the U.S., and better understand their ownership and governance structures, management objectives, benefits, and financing....
Exposure to microbial pathogens is the primary concern of sanitary sewer overflows; however, sewage spills may also be a significant source of toxic metals, including methylmercury (MeHg). Between November 2015 and January 2017, after Hurricane Joaquin, surface water samples were collected routinely from three creeks in Columbia, SC. Routine sampling...
Humpback whales (Megaptera novaeangliae), a mysticete with a cosmopolitan distribution, demonstrate
marked behavioural plasticity. Recent studies show evidence of social learning in the transmission of specific
population level traits ranging from complex singing to stereotyped prey capturing behaviour. Humpback
whales have been observed to employ group foraging techniques, however details...
Humpback whales (Megaptera novaeangliae), a mysticete with a cosmopolitan distribution, demonstrate
marked behavioural plasticity. Recent studies show evidence of social learning in the transmission of specific
population level traits ranging from complex singing to stereotyped prey capturing behaviour. Humpback
whales have been observed to employ group foraging techniques, however details...
Full Text:
humpback whales
Evidence for acoustic communication among bottom foraging
humpback whales
Parks, S. E
Humpback whales (Megaptera novaeangliae), a mysticete with a cosmopolitan distribution, demonstrate
marked behavioural plasticity. Recent studies show evidence of social learning in the transmission of specific
population level traits ranging from complex singing to stereotyped prey capturing behaviour. Humpback
whales have been observed to employ group foraging techniques, however details...
We compared uropathogen antibiotic susceptibility across age groups of ambulatory
pediatric patients. For Escherichia coli (n=5,099) and other Gram-negative rods (n=626), significant
differences (p<0.05) existed across age groups for ampicillin, cefazolin, and
trimethoprim/sulfamethoxazole susceptibility. In E. coli, differences in
trimethoprim/sulfamethoxazole susceptibility varied from 79% in children under 2 to 88%...
Polycyclic aromatic hydrocarbons (PAHs) are present in the environment as complex mixtures with components that have diverse carcinogenic potencies and mostly unknown interactive effects. Non-additive PAH interactions have been observed in regulation of cytochrome P450 (CYP) gene expression in the CYP1 family. To better understand and predict biological effects of...
Using a probability-based neighborhood sample of urban African American youth and a sample of their close friends (N = 202), we conducted a one-year longitudinal study to examine key questions regarding sexual and drug using norms. The results provide validation of social norms governing sexual behavior, condom use, and substance...
Published April 1983. Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the Sea Grant Catalog: http://seagrant.oregonstate.edu/publications
Adult Chinook salmon (Oncorhynchus tshawytscha) migrate from salt water to freshwater streams to spawn. Immune responses in migrating adult salmon are thought to diminish in the run up to spawning, though the exact mechanisms for diminished immune responses remain unknown. Here we examine both adaptive and innate immune responses as...
n situ soil moisture monitoring networks are critical to the development of soil moisture remote sensing missions as well as agricultural and environmental management, weather forecasting, and many other endeavors. These in situ networks utilize a variety of sensors and installation practices, which confounds the development of a unified reference...
Dibenzo(def,p)chrysene (DBC), (also known as dibenzo[a,l]pyrene), is a high molecular weight
polycyclic aromatic hydrocarbon (PAH) found in the environment, including food, produced by
the incomplete combustion of hydrocarbons. DBC, classified by IARC as a 2A probable human
carcinogen, has a relative potency factor (RPF) in animal cancer models 30-fold higher...
Full Text:
Madeen,†,‡ Richard A. Corley,‡,⊥ Susan Crowell,‡,⊥ Kenneth Turteltaub,# Ted Ognibene,¶
Mike Malfatti
Dibenzo(def,p)chrysene (DBC), (also known as dibenzo[a,l]pyrene), is a high molecular weight
polycyclic aromatic hydrocarbon (PAH) found in the environment, including food, produced by
the incomplete combustion of hydrocarbons. DBC, classified by IARC as a 2A probable human
carcinogen, has a relative potency factor (RPF) in animal cancer models 30-fold higher...
Full Text:
]chrysene by
Accelerator Mass Spectrometry Following Oral Micro-Dosing
Madeen, E., Corley, R. A., Crowell
We have previously shown that relative potency factors and DNA adduct measurements are inadequate for predicting carcinogenicity of certain polycyclic aromatic hydrocarbons (PAHs) and PAH mixtures, particularly those that function through alternate pathways or exhibit greater
promotional activity compared to benzo[a]pyrene (BaP). Therefore, we developed a pathway
based approach for...
In the past 100 years since the birth of fisheries oceanography, research on the early life history of fishes, particularly the larval stage, has been extensive, and much progress has been made in identifying the mechanisms by which factors such as feeding success, predation, or dispersal can influence larval survival....
Dibenzo(def,p)chrysene (DBC), (also known as dibenzo[a,l]pyrene), is a high molecular weight polycyclic aromatic hydrocarbon (PAH) found in the environment, including food, produced by the incomplete combustion of hydrocarbons. DBC, classified by IARC as a 2A probable human carcinogen, has a relative potency factor (RPF) in animal cancer models 30-fold higher...
Polycyclic aromatic hydrocarbons (PAHs) are ubiquitous environmental contaminants generated as byproducts of natural and anthropogenic combustion processes. Despite significant public health concern, physiologically based pharmacokinetic (PBPK) modeling efforts for PAHs have so far been limited to naphthalene, plus simpler PK models for pyrene, nitropyrene, and benzo[a]pyrene (B[a]P). The dearth of...
During austral summer 1997, satellite imagery revealed enhanced chlorophyll associated with the Antarctic Polar Front at 170°W. Phytoplankton growth conditions during the early stages of the spring increase were investigated on the Antarctic Environment and Southern Ocean Process Study Survey I cruise using flow cytometry (FCM) and microscopy to characterize...
The purpose of this watershed assessment is to inventory and characterize watershed conditions of the Miami River watershed and to provide recommendations that address the issues of water quality, fisheries and fish habitat, and watershed hydrology. This assessment was conducted by reviewing and synthesizing existing data sets and some new...
The purpose of this watershed assessment is to provide an inventory and characterization of
watershed conditions in the Wilson River watershed and to provide recommendations that
address the issues of water quality, fisheries and fish habitat, and watershed hydrology.
Embryonic diapause is a reproductive strategy widespread in the animal kingdom. This phenomenon is defined by a temporary arrest in blastocyst growth and metabolic activity within a quiescent uterus without implantation until the environmental and maternal milieu become favorable for pregnancy to progress. We found that uterine Msx expression persists...
Accurately estimating the vertical flux of material reaching the seafloor from the overlying surface waters is essential for the paleoceanographic reconstruction of a wide variety of oceanic processes. Two approaches are currently being used. One consists of estimating mass accumulation rates (MAR) between dated horizons as the product of linear...
FVB/N mice wild-type, heterozygous or null for Cyp 1b1 were used in a two-stage skin tumor study comparing PAH, benzo[a]pyrene (BaP), dibenzo[def,p]chrysene (DBC), and coal tar extract (CTE, SRM 1597a). Following 20 weeks of promotion with TPA the Cyp 1b1 null mice, initiated with DBC, exhibited reductions in incidence, multiplicity,...
Enterococci are among the leading pathogens isolated in hospital-acquired infections. Current antimicrobial options for vancomycin-
resistant enterococci (VRE) are limited. Prior data suggest that daptomycin at>6 mg/kg of body weight/day may be used
to treat enterococcal infections. We retrospectively evaluated the effectiveness and safety of high-dose daptomycin (HD-daptomycin)
therapy (>6...
Peptide phosphorodiamidate morpholino oligomers (PPMO) are synthetic DNA mimics that bind complementary RNA and inhibit bacterial gene expression. (RFF)₃RXB- AcpP PPMO (R, arginine; F, phenylalanine; X, 6-aminohexanoic acid; B, β-alanine) is complementary to 11 bases of the essential gene acpP (encodes acyl carrier protein). The MIC of (RFF)₃RXB-AcpP was 2.5...
The polycyclic aromatic hydrocarbon (PAH), benzo[a]pyrene (BaP), was compared to dibenzo[def,p]chrysene (DBC) and combinations of three environmental PAH mixtures (coal tar, diesel particulate and cigarette smoke condensate) using a two stage, FVB/N mouse skin tumor model. DBC (4 nmol) was most potent, reaching 100% tumor incidence with a shorter latency...
In 2006–2007, an unusually high number of harbor porpoises (Phocoena phocoena) stranded along the Washington and Oregon coastlines. Spatiotemporal analyses were used to examine their ability to detect clusters of porpoise strandings during an unusual mortality event (UME) in the Pacific Northwest using stranding location data. Strandings were evaluated as...
Many soil-derived particles dominated by insoluble material, including Saharan dusts, are known to act as ice nuclei. If, however, dust particles can compete with other atmospheric particle types to form liquid cloud droplets, they have a greater potential to change climate through indirect effects on cloud radiative properties and to...
While there is a persistent inverse relationship between latitude and species diversity across many taxa and ecosystems, deviations from this norm offer an opportunity to understand the conditions that contribute to large-scale diversity patterns. Marine systems, in particular, provide such an opportunity, as marine diversity does not always follow a...
With the ongoing crisis of biodiversity loss and limited resources for conservation, the concept of biodiversity hotspots has been useful in determining conservation priority areas. However, there has been limited research into how temporal variability in biodiversity may influence conservation area prioritization. To address this information gap, we present an...
Increasing public awareness that the Cascadia subduction zone in the Pacific Northwest is capable of great earthquakes (magnitude 9 and greater) motivates the Cascadia Initiative, an ambitious onshore/offshore seismic and geodetic experiment that takes advantage of an amphibious array to study questions ranging from megathrust earthquakes, to volcanic arc structure,...
We present multiple lines of evidence for years to decade-long changes in the location and
character of volcanic activity at West Mata seamount in the NE Lau basin over a 16 year period, and a hiatus
in summit eruptions from early 2011 to at least September 2012. Boninite lava and...
Wildfire risk in temperate forests has become a nearly intractable problem that can be characterized as a socioecological “pathology”: that is, a set of complex and problematic interactions among social and ecological systems across multiple spatial and temporal scales. Assessments of wildfire risk could benefit from recognizing and accounting for...
Pandemic influenza viruses modulate proinflammatory responses that can lead to immunopathogenesis. We present an extensive and systematic profiling of lipids, metabolites, and proteins in respiratory compartments of ferrets infected with either 1918 or 2009 human pandemic H1N1 influenza viruses. Integrative analysis of high-throughput omics data with virologic and histopathologic data...
Correction
5 Mar 2013: Ohm RA, Feau N, Henrissat B, Schoch CL, Horwitz BA, et al. (2013) Correction: Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi. PLOS Pathogens 9(3): 10.1371/annotation/fcca88ac-d684-46e0-a483-62af67e777bd
Engaging large numbers of undergraduates in authentic scientific discovery is desirable but difficult to achieve. We
have developed a general model in which faculty and teaching assistants from diverse academic institutions are trained to teach a
research course for first-year undergraduate students focused on bacteriophage discovery and genomics. The course...
Full Text:
Students
Tuajuanda C. Jordan,a Sandra H. Burnett,b Susan Carson,c Steven M. Caruso,d Kari Clase,e Randall
Engaging large numbers of undergraduates in authentic scientific discovery is desirable but difficult to achieve. We
have developed a general model in which faculty and teaching assistants from diverse academic institutions are trained to teach a
research course for first-year undergraduate students focused on bacteriophage discovery and genomics. The course...
Engaging large numbers of undergraduates in authentic scientific discovery is desirable but difficult to achieve. We
have developed a general model in which faculty and teaching assistants from diverse academic institutions are trained to teach a
research course for first-year undergraduate students focused on bacteriophage discovery and genomics. The course...
In many databases, biocuration primarily involves literature curation, which usually involves retrieving relevant articles, extracting information that will translate into annotations and identifying new incoming literature. As the volume of biological literature increases, the use of text mining to assist in biocuration becomes increasingly relevant. A number of groups have...
Crystallographic studies of ligands bound to biological macromolecules (proteins and nucleic acids) represent an important source of information concerning drug-target interactions, providing atomic level insights into the physical chemistry of complex formation between macromolecules and ligands. Of the more than 115,000 entries extant in the Protein Data Bank (PDB) archive,...
Full Text:
, Catherine E. Peishoff, Susan Pieniazek, Randy J. Read, Chenghua Shao, Steven
Sheriff, Oliver Smart, Stephen
Crystallographic studies of ligands bound to biological macromolecules (proteins and nucleic acids) represent an important source of information concerning drug-target interactions, providing atomic level insights into the physical chemistry of complex formation between macromolecules and ligands. Of the more than 115,000 entries extant in the Protein Data Bank (PDB) archive,...
Full Text:
digital
Tobias Krojer,22 Joseph Marcotrigiano,6,23 Alan E. Mark,24 John L. Markley,25 Matthew
Crystallographic studies of ligands bound to biological macromolecules (proteins and nucleic acids) represent an important source of information concerning drug-target interactions, providing atomic level insights into the physical chemistry of complex formation between macromolecules and ligands. Of the more than 115,000 entries extant in the Protein Data Bank (PDB) archive,...
The Gene Ontology (GO) Consortium (http://www.geneontology.org) (GOC) continues to develop,
maintain and use a set of structured, controlled
vocabularies for the annotation of genes, gene
products and sequences. The GO ontologies
are expanding both in content and in structure.
Several new relationship types have been introduced
and used, along with...
The rapid disruption of tropical forests probably imperils global biodiversity more than any other contemporary phenomenon¹⁻³. With deforestation advancing quickly, protected areas are increasingly becoming final refuges for threatened species and natural ecosystem processes. However, many protected areas in the tropics are themselves vulnerable to human encroachment and other environmental...