This thesis presents the idea for FORIN (Forest Roads Inventory), a computerized forest roads inventory system. FORIN is a tool to more efficiently inventory and manage information of forest roads. FORIN is intended for use by field personnel, who will use pen-based computers to improve productivity, accuracy of inventories, to...
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AN ABSTRACT OF TILE THESIS OF
Peter (Pece) V. Gorsevski for the
The purpose of this study was three-fold: to determine how
the false assumption of an abnormal heart condition affected the
lives of false-positive students; the effects of phonocardioscan screening
and cardiologist follow-up procedures on delabeled school children;
and the effectiveness of the follow-up procedures used in
delabeling the false-positive students....
• Premise of the study: The dramatic advances offered by modern DNA sequencers continue to redefine the limits of what can be accomplished in comparative plant biology. Even with recent achievements, however, plant genomes present obstacles that can make it difficult to execute large-scale population and phylogenetic studies on next-generation...
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Liston, PeterJ. Maughan, Matthew Parks, John V. Syring, and
Joshua Udall. 2012. Targeted enrichment
• Premise of the study: The dramatic advances offered by modern DNA sequencers continue to redefine the limits of what can be accomplished in comparative plant biology. Even with recent achievements, however, plant genomes present obstacles that can make it difficult to execute large-scale population and phylogenetic studies on next-generation...
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, Aaron Liston, PeterJ. Maughan, Matthew Parks, John V. Syring, and Joshua Udall. 2012. Targeted
• Premise of the study: The dramatic advances offered by modern DNA sequencers continue to redefine the limits of what can be accomplished in comparative plant biology. Even with recent achievements, however, plant genomes present obstacles that can make it difficult to execute large-scale population and phylogenetic studies on next-generation...
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J. KNAUS 2 , AARON LISTON 3 , PETERJ. MAUGHAN 4 ,
MATTHEW PARKS 3 , JOHN V. SYRING
• Premise of the study: The dramatic advances offered by modern DNA sequencers continue to redefine the limits of what can be accomplished in comparative plant biology. Even with recent achievements, however, plant genomes present obstacles that can make it difficult to execute large-scale population and phylogenetic studies on next-generation...
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, PeterJ. Maughan, Matthew Parks, John V. Syring, and
Joshua Udall. 2012. Targeted enrichment strategies
• Premise of the study: The dramatic advances offered by modern DNA sequencers continue to redefine the limits of what can be accomplished in comparative plant biology. Even with recent achievements, however, plant genomes present obstacles that can make it difficult to execute large-scale population and phylogenetic studies on next-generation...
The end of the Cold War brought about changes within international political relations that resulted in expanded interest in global civil society. Such developments, like globalization and democratization, have encouraged the growth of social and political organizations. Political scientists have found that these inter-governmental and non-governmental organizations have a significant...
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Seeger, Peter Gabriel, Sting, Peter, Paul & Mary, John Denver, Bob Marley, Michael Stipe, Paul Young
Native to the Pacific Northwest, Ceratomyxashastais a myxosporeanparasite that infects wild and cultivated salmon and has a significance impact on its population in the Klamath River basin. The study suggests that the transmission of mixed genotypes of the parasite are common in Chinook salmon but the age of the fish...
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D R . J E R R I BA RT H O LO M E W & C H A R L E N E H U RS T
S A L M O N D I S EA S E L A
My thesis explores the later work of author J.D. Salinger, including two narratives featured in Nine Stories, "A Perfect Day for Bananafish," and "Teddy," and Franny and Zooey, "Raise High the Roof Beam, Carpenters," and "Seymour: an Introduction." Through my analysis I argue that the religious nature of Salinger's fiction...
This research explores the mechanisms of Track III diplomacy employed by EcoPeace Middle East, in the context of environmental peacebuilding within the Jordan Basin region. Focusing on how these mechanisms contribute to improving water quality and quantity, the study delves into their processes in facilitating cooperation among conflicting parties—Israelis, Palestinians,...
A reliable, easy, and inexpensive method for determination of
molecular hydrocyanic acid (HCN) in solutions of simple and complex
metal cyanides is described. The method was used to determine
molecular HCN concentrations as low as 0.005 milligram per liter,
and can be used for determination of even lower levels. It...
Comprehensive studies comparing tensile properties of sutures are over 25 years old and do not include recent advances in suture materials. Accordingly, the objective of this paper is to investigate the tensile properties of commonly-used sutures in cutaneous surgery. Thirteen 3-0 sized modern sutures (four non-absorbable and nine absorbable) were...
Documented trends in rising sea levels, storminess, and extreme wave heights have the potential to increase the frequency and magnitude of coastal change hazards, increasing risks to coastal infrastructure and environmental resources. Coastal planners and decision makers need information about the impacts of future hazards in order to apply mitigation...
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Peter Ruggiero
Documented trends in rising sea levels, storminess, and extreme wave
My thesis is comprised of two articles, titled "Journeying Through (An)Other World: Examining the Role of Magic and Transformational Otherness in Sir Gawain and the Green Knight" and "Magic, Muggles, and Mudbloods: Examining Magical Otherness in J.K. Rowling's Harry Potter Series." The introduction frames the thematic, theoretical, and critical connections...
Tyria jacobaeae was introduced as a biological control agent to control the noxious weed Jacobea vulgaris. Eventually introduced to the Cascade mountain range of Oregon, T. jacobaeae has been found to feed on Senecio triangularis, a native plant closely related to J. vulgaris. Nosema tyriae is a parasitic fungus under...
We report evidence for the simultaneous production of J/ψ and Υ mesons in 8.1 fb⁻¹ of data collected at s√=1.96 TeV by the D0 experiment at the Fermilab pp¯ Tevatron Collider. Events with these characteristics are expected to be produced predominantly by gluon-gluon interactions. In this analysis, we extract the effective cross...
In the Spring of 2001, the Oregon State University Libraries began planning for a collaboration with the university’s Freshman Composition Program. In implementing this project, with no additional library resources, and with the majority of library faculty less experienced in working with freshman students, the coordinators of the program learned...
This thesis is an exploration of literary representation of professors, specificially in Willa Cather's The Professor's House and Vladimir Nabokov's Pnin. I explicate the political unconscious of these texts by teasing out the tensions and ironies stemming from the conflict between the radical political consequences of the titular characters' scholarship...
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Peter Betjemann
This thesis is an exploration of literary representation of professors
My thesis examines a total of fourteen characters from The Portrait of a Lady and The Turn of the Screw. Primarily, I have discovered an overwhelming pattern in these two works by Henry James; when characters make direct entrances--that is when they are not described or discussed in absentia by...
Although the biology of Bradyrhizobium has been studied for almost
one hundred years, virtually nothing is known about the ecology and genetic
variation in natural soil populations of this genus. The majority of
information has been obtained from studies of one species, Bradyrhizobium
japonicum, and the diversity within soil populations...
Bioremediation in the vadose zone is unpredictable because of poor understanding of factors influencing microbial growth in this environment. A lab-scale experimental system was developed to examine, noninvasively, interactions between microbial growth, water flow, and solute transport in unsaturated porous media. Measurements of microbial colonization, and its impact on hydrology,...
Nodulation success by two indigenous Rhizobium
trifolii serogroups, 6 and 36, on subterranean clover
(Trifolium subterraneum L.) was affected by the addition
of phosphate to Abiqua soil (Ultic Haploxeroll). To
understand the impact of phosphorus nutrition on the
survival and nodulation characteristics of the two
serogroups, studies were carried out...
The regulation of monooxygenase enzymes has been demonstrated in bacteria that grow on methane and long chain-length alkanes (>C10). Less is known about monooxygenase regulation in short chain alkane oxidizing bacteria that grow on intermediate chain-length alkanes C2-C10. This dissertation focuses on the regulation of butane monooxygenase (BMO) expression and...
The chemolithoautotrophic nitrite oxidizing bacteria (NOB) participate in the
biogeochemical cycling of nitrogen by catalyzing and conserving energy from the
oxidation of nitrite (NO₂-) to nitrate (NO₃-) via a nitrite oxidoreductase (NXR). The
main objective of this work was to comparatively annotate and analyze the genome
sequences of Nitrobacter winogradskyi...
In recent years considerable interest has been shown in the diversity of ammonia-oxidizing bacteria in soil communities. The majority of the research has been carried out in Northern Europe where soils have received high atmospheric inputs of nitrogen over the past two centuries. In contrast, although much work has been...
This thesis presents novel findings regarding
symbiotic, physiological, and antigenic characteristics of
representatives from an indigenous soil-borne population
of Rhizobium meliloti. Nodules were sampled from 'Vernal',
'Anchor', and 'Saranac' alfalfa, and the isolates analyzed
serologically. Rhizobium meliloti serogroup 31 was
identified as a dominant nodule occupant, with a greater
and...
Reductive dechlorination of chlorinated ethenes is dependent upon suitable substrates promoting microbial activity and creating anaerobic conditions. At the periphery of active reductive dechlorinating zones combinations of lesser chlorinated ethenes should exist along with end products of the anaerobic metabolism that is driving reductive dechlorination. Potential end-products of anaerobic metabolism...
In most environments, ammonia (NH₃) is oxidized to nitrate (NO₃⁻) via the intermediate nitrite (NO₂⁻). This is a microbe-driven process involving phylogenetically distinct types of microorganisms, namely, ammonia-oxidizing bacteria (AOB) and Thaumarchaea (AOA), and nitrite-oxidizing bacteria (NOB). Nitrosomonas europaea and Nitrobacter winogradskyi are the best studied AOB and NOB, respectively,...
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PeterJ. Bottomley
In most environments, ammonia (NH3) is oxidized to nitrate (NO3-) via the
Complementary methods of strain identification were sought to
delineate the composition of the population of Rhizobium trifolii
found in nodules of Trifolium subterraneum L. when exposed to an
Abiqua silty clay loam (Cumulic Ultic Haploxeroll) containing a
resident population of R. trifolii. Sodium dodecyl sulfate
polyacrylamide gel electrophoresis (SDSPAGE) was...
Although legumes have been widely studied for their nitrogen-fixing ability, it is uncertain to what extent legume cover crops achieve their nitrogen-fixing potential under the climatic conditions encountered in western Oregon. Furthermore, it is unknown what factors control the proportions of legume cover crop N that are either sequestered into...
This thesis is arranged in three chapters which explore Wharton’s representations of nature in three novels: The House of Mirth (1905), The Fruit of the Tree (1907), and The Custom of the County (1913). This thesis contends that Wharton’s novels reveal changes in the interplay between representations of nature and...
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Peter Betjemann
This thesis is arranged in three chapters which explore Wharton’s representations
In a series of greenhouse experiments, isolates representing serotypically
distinct subpopulations of Rhizobium leguminosarum bv. trifolii recovered from root
nodules of field-grown subclover Trifolium subterraneum cv. "Nangeela"), were
evaluated for their symbiotic effectiveness potential, their effect on regrowth
potential of subclover, and for their competitive abilities to form nodules. Isolates...
In this study I explore the relationship between firm value and conforming tax avoidance (tax avoidance that does not create a book-tax difference). Tax avoidance provides firms more cash, creating value for the firm. However, conforming tax avoidance has costs, such as lower book income, and these costs potentially lower...
In the beginning of her travelogue, A Motor‐Flight Through France (1908), Edith Wharton declares that “the motor‐car has restored the romance of travel.” Many scholars have taken this statement as an index to the book’s themes. However, my reading closely examines particular moments of travel (specifically Wharton’s visits to Beauvais...
Agronomic and microbiological studies were conducted on "Anchor" alfalfa (Medicago sativa L.) established from uninoculated seed on three Aridisols in central Oregon. Significant responses to 230 Kg N per ha (NH₄NO₃), which was applied in mid-April and after each first and second harvests, were observed in yield parameters of the...
The objectives of this thesis were to evaluate the responses of soil microbial communities to physical and chemical disturbances, and associate these responses with soil functional stability and changes in soil quality. The first study consisted of application of heat shocks (HS) to soils with contrasting land use history to...
Although much has been learned about the comparative
nodulating behavior of simple mixtures of rhizobial strains
under non-soil situations, it is unclear how these findings
relate to the factors influencing nodulation success by the
complex mixtures of strains found within soil-borne
rhizobial populations. Information on the structure and
physiological behavior...
At first glance, Edgar Rice Burroughs's wildly popular romantic fantasy novel, Tarzan of the Apes (1912), and Charlotte Perkins Gilman's feminist science fiction-utopian novel, Herland (1915), with its dystopian companion, With Her in Ourland (1916), may appear to have little in common. Tarzan celebrates the human connection with wild nature...
Ectomycorrhizal (ECM) fungi of the genera Piloderma and Ramaria form dense hyphal mats in the organic and upper mineral soil layers, respectively, in coniferous forest floors of the Pacific Northwest. Previous studies have determined that fungal mats change the chemical, physical, and biological properties of the soil within. Little information...
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PeterJ. Bottomley
Ectomycorrhizal (ECM) fungi of the genera Piloderma and Ramaria form
This thesis explores the electrified female subject in two novels, Theodore Dreiser's Sister Carrie (1900) and Edith Wharton's The House of Mirth (1905). As cultural touchstones, two literary works that prominently feature electricity -- Henry James' story "In the Cage" and Henry Adams' biography The Education of Henry Adams --...
The chloroacetanilide herbicide alachlor is the second most widely used herbicide
in the US, where it is used on major crops such as corn and soybean. Although alachlor is
mineralized slowly in soil, metabolites of alachlor have been found in soil indicating that
alachlor is subject to chemical or biological...
To the chagrin of his American comrades, Washington Irving would spend much of his life in Europe as a writer and cross-cultural explorer, including a stay in the halls of the Alhambra. This experience led to the completion of Tales of the Alhambra (1832), a collection of sketches, anecdotes, and...
In his Nick Adams stories, Ernest Hemingway traces the life of a single man as he moves from boyhood to adolescence to adulthood to fatherhood. From the beginning of Nick Adams life, it is clear that he does not fit into the role of the traditional hero. In addition, Nick...
In this project, I explore the use of monomania as a literary and rhetorical device that pathologizes deviance from certain norms—in this case, sexual and political norms— and allows for contradiction, dissonance, and reform. Using Nathaniel Hawthorne’s short story “The Birthmark” and Edmund Clarence Stedman’s poem “How Old Brown Took...
This thesis is an exploration of how male trickster figures operate in the Gothic fiction of 20th century American female authors. Specifically, I look at the short stories “The Daemon Lover” by Shirley Jackson, “Good Country People” by Flannery O’Connor, and “Where Are You Going, Where Have You Been?” by...
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Peter Betjemann
This thesis is an exploration of how male trickster figures operate in the
This thesis explores the artistic imperatives and internal struggles of women painters in two novels, Kate Chopin's The Awakening (1899) and Virginia Woolf's To the Lighthouse (1927). I identify Chopin's Edna Pontellier and Woolf’s Lily Briscoe as painters who exhibit Impressionist strains, both in how they paint and how they...
Cotton Mather's Wonders of the Invisible World (1692) has traditionally been dismissed
as a failed missive attempting to defend the controversial Salem Witch Trials. What is
missing from this characterization is an analysis of the degree to which the text, written
at a moment of crisis in Puritan culture, actually...
Previous research had identified four serogroups of Rhizobium trifolii
indigenous to Abiqua soil (fine, mixed, mesic, Cumulic Ultic Haploxerolls).
Nodulation of subterranean clover (Trifolium, subterraneum L.) by two of the
serogroups, 6 and 36, was influenced by the application of CaC0₃ to the soil.
The studies described in this thesis...
Numerous properties of Yucca schidigera and Quillaja saponaria have been studied with respect to the saponins in the plant. These saponins are present in the extract as well and have been utilized commercially in the food and cosmetic industry for various products. Saponins have detergent-like properties in the presence of...
Mathematical models of the precipitation process are needed to
effectively use historical precipitation data in the design and
planning of engineering projects and for analysis of watershed
runoff behavior. Existing simple models based on the assumptions of
independent, identically-distributed random variables are
insufficient to describe several features of the historical...
The photohydrodebromination of brominated paracyclophanes was studied to
help elucidate the possible mechanistic pathways leading to product for
bromoarenes in general. Several brominated [2.2]paracyclophanes were studied to
determine the effect of substitution patterns on this reaction. [2.2]Paracyclophanes
were chosen for this study in order to investigate possible intramolecular excimer
formation...
This work furthers the understanding of processes occurring in catchments that affect stream nitrate concentrations using two different approaches: a temporally intensive case study of three headwater catchments with varying land use (through storm event monitoring) and a spatially intensive study on the regional scale (through statistical modeling) of 1st-4th...
Sediments are the major compartment in aquatic environments for many materials of toxic or nutrient concern. The lack of knowledge of the phase associations of toxic metals in sediments is the largest deficiency in our understanding of the environmental hazard posed by metal contamination. This study examined the sedimentary partitioning...
This dissertation presents results from three studies that address major scientific questions in glacial geology and paleoclimatology for the late Pleistocene and Holocene using relatively new geochemical and statistical techniques. Each of the studies attempts to answer a longstanding question in the respective field using geochemical or statistical methods that...
The Cinnabar moth, Tyria jacobaeae, has been introduced to North America in an effort to control the invasive plant Jacobaea vulgaris. The Cinnabar moth is the main host of Nosema tyriae. When infection levels are high, N. tyriae can shorten the lifespan and affect reproduction of the Cinnabar moths. The...
This dissertation explores one overarching question relevant to the
paleoclimate of the latest Pleistocene glacial cycle (approximately the last
130,000 years): “How did spatial and temporal evolution of ocean
temperature, both at the surface and interior, relate to other parts of the
climate system in the late Pleistocene?” Results from...
Previous investigations of glacier dynamics at Tioga Pass during the Last Glacial Maximum (LGM) have produced different conclusions. A map of the LGM ice extent and flow direction (Alpha et al., 1987) illustrates a south-to-north direction of ice flow across the pass with little evidence to support this inference. Since...
The results presented in this dissertation address a number of questions regarding late Pleistocene and Holocene ice-sheet and climate interactions, spanning disciplines involving paleoclimatology and atmospheric science. These studies use various techniques in geochemistry, climate modeling, and ice-sheet modeling to address ice- sheet response to climate and the attendant interactions...
This dissertation presents the results of three studies that assessed climate variability on short and long timescales in western United States. The growth of carbonate formations in caves (speleothems) is used to infer the timing and amplitude of past climate variability. We first assess the controls on speleothem growth for...
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Peter U. Clark
This dissertation presents the results of three studies that assessed
An inelastic scattering experiment was done in which 17-MeV
protons from the Oregon State University cyclotron were scattered
from ¹⁴N
and ¹⁵N gas targets. Angular distributions are shown for
the ground, 6.32-, 7.56-, 8.31-, and 8.57 -MeV states and the 5.3- and
7.2-MeV unresolved doublets of ¹⁵N, and for the...
The cinnabar moth (Tyria jacobaeae (L.), Lepidoptera: Arctiidae) is an icon in
population ecology and biological control that has recently lost its shine based on evidence
that (1) it is less effective than alternatives (such as the ragwort flea beetle Longitarsus
jacobaeae (Waterhouse) (Coleoptera: Chrysomelidae) for controlling ragwort Senecio
jacobaea...
Coastal hazards are the result of numerous physical processes cumulatively causing water levels to flood and erode the land. The waves, storm surges, tides, and run-off contributing to elevated water levels are each the product of chaotic and random weather patterns. These stochastic weather patterns dissipate energy in Earth's climate...
Coastal flood hazard zones and the design of coastal defenses are often devised using either the maximum recorded total water level (TWL) or a 'design' event such as the 100-year return-level flood, usually projected from observed extreme events. Despite technological advances driving more consistent instrumental records of wave heights and...
The metal-organic–framework MOF-5 is used as an adsorbent in advanced systems for vehicular hydrogen storage that are currently under development. Presently, these systems are limited by poor thermal conductivity of the adsorption bed, and thus our research addresses how the interfaces between grains of MOF-5 can be engineered to improve...
A stalagmite (sample OCNM8-02A) collected from Oregon Caves National Monument (OCNM) was sampled for stable isotope ratios in order to develop a record of Pacific Northwest climate history. Nine U-series dates indicate that the record spans the time period - 13.5 - 9.5 ka. The stalagmite growth rate varied from...
Coastal flooding and erosion are major concerns for low lying coastal communities -- particularly in light of accelerated sea level rise and climate change. To improve quantitative understanding of the physical drivers of both flooding and coastal landscape change, this dissertation explores coastal morphodynamics bridging the land-sea interface on modally...
The coast of Oregon is highly dynamic, with beach and dune morphodynamics constantly evolving in response to physical and ecological forcing at scales ranging from seconds to decades and meters to tens of kilometers. Evaluating spatial and temporal trends in shoreline evolution is paramount in understanding and eventually developing a...
This study utilizes probabilistic surrogate modeling techniques around San Diego Bay with an emphasis on naval infrastructure and operations to evaluate the impact of five global mean sea level rise scenarios (GMSLR). Spatially continuous total water levels (TWLs) are combined with a digital elevation model (DEM) of the region to...
Coastal communities throughout the US West Coast and elsewhere are facing the daunting task of preparing for climate change impacts, particularly the hazards from increased flooding and erosion. With sea-level rise, changing storminess patterns, and possible changes to the frequency and severity of major El Niño events, communities are already...
This thesis presents the results of an investigation into the interactions between the present-day South Cascade Glacier and the former Mauna Kea ice cap at short (annual to centennial) and long (millennial and multimillennial) time scales. To quantify the response of South Cascade Glacier to atmospheric conditions, a surface energy...
Coastal dunes provide a diverse set of ecosystem services including coastal protection against destructive surge and waves during storm events. Dunes are constantly evolving through various stages of response to storm events and post-storm recovery at rates that vary due to a range of drivers including pre-existing morphology, environmental forcing...
Coastal and estuarine flooding and erosion events are usually driven by the cumulative effect of multiple individual processes like waves, streamflow, storm surge, and/or tides. This dissertation focuses on separating the influence of the regional and local-scale geomorphologic and hydrodynamic processes driving variability in the magnitude and impacts of extreme...
Mixed linear models are a time honored method of analyzing correlated data. However, there is still no method of calculating exact confidence intervals or p-values for an arbitrary parameter in any mixed linear model. Instead, researchers must use either specialized approximate and exact tests that have been developed for particular...
The metabolism of pyrrolizidine alkaloids and other
drugs was studied with regard to nutritional status and
species differences. Pyrrolizidine alkaloids which are biotransformed
to severely toxic metabolites were isolated
from tansy ragwort (Senecio jacobaea). Semi-purified alkaloid
crystals containing five alkaloids (senecionine, seneciophylline,
jacobine, jacoline, and jacozine) were prepared
and found...
This thesis presents the results of an investigation into the measured and modeled
mass balance of the Collier Glacier, a small (0.70 km²), valley glacier located in the
Oregon Cascade Range (44° 10' N, 121° 47' W). Here we present mass-balance
measurements conducted for the 2009 and 2010 balance years...
Oregon’s foredunes are part of a dynamic coastal environment that constantly evolves in response to both ecological and physical forces. Invasive beachgrasses have outcompeted native dune grass in the region and have influenced the shape of Oregon’s foredunes via species-specific biophysical feedback mechanisms. As climate change induced sea-level rise will...
Sand dunes provide coastal communities critical protection from flooding and erosion, as well as a habitat for a range of species- some threatened or endangered. As such, it is of importance to develop a quantitative understanding of the processes through which these systems evolve at a variety of temporal and...
Recent coastal disasters (e.g., Hurricane Sandy, Typhoon Haiyan) and chronic issues (e.g., Florida's "nuisance flooding") provide numerous examples of coastal communities struggling to adapt in the face of climate change impacts. Decision-makers and the public alike must reconcile the lack of "fit" between a rapidly changing environment and the effects...