The end of the Cold War brought about changes within international political relations that resulted in expanded interest in global civil society. Such developments, like globalization and democratization, have encouraged the growth of social and political organizations. Political scientists have found that these inter-governmental and non-governmental organizations have a significant...
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Commencement June 2002
Honors Bachelor of Arts in Liberal Studies project of Maxie J. Peterson
The end of the Cold War brought about changes within international political relations that resulted in expanded interest in global civil society. Such developments, like globalization and democratization, have encouraged the growth of social and political organizations. Political scientists have found that these inter-governmental and non-governmental organizations have a significant...
Measurements on growth traits up to 41 years of age
from 68 progeny sites in eight first-generation breeding
zones of coastal Douglas-fir (Pseudotsuga menziesii
[MIRB.] FRANCO var. menziesii) in the US Pacific Northwest
were used to investigate age trends of genetic parameters
and to determine optimum age of selection. Heritabilities...
A publication containing advice on a wide range of gardening topics, including composting, container gardens, fall/winter gardens, fertilizing, insect pests, plant diseases, planting guidelines, raised beds, site selection, slugs, soil improvement, tilling, warm-season crops, watering, and weeds. Includes regional tips for various parts of Oregon.
The upper Eocene to lower Oligocene Oswald West mudstone is
the oldest formation (informal) in the Green Mountain-Young's
River area. This 1,663 meter thick hemipelagic sequence was deposited
in a low-energy lower to upper slope environment in the Coast
Range forearc basin. The formation ranges from the late Narizian
to...
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Tertiary System of the Pacific
Northwest was presented in Conrad's 1848 publication of J. K.
Townsend's
Many Gram-negative bacteria use a type III secretion system (T3SS) to establish associations with their hosts. The T3SS is a conduit for direct injection of type-III effector proteins into host cells, where they manipulate the host for the benefit of the infecting bacterium. For plant-associated pathogens, the variations in number...
Eukaryotic ribosome biogenesis involves ~200 assembly
factors, but how these contribute to ribosome
maturation is poorly understood. Here, we
identify a network of factors on the nascent 60S subunit
that actively remodels preribosome structure. At its hub is
Rsa4, a direct substrate of the force-generating ATPase
Rea1. We show that...
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. Bilen for generation of the ipi3 ts mutants; G. Manikas for cloning of ctRSA4; K. Wild, Y. Ahmed, E
Published May 1961. Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog
We explore selected aspects of J.-Y. Parlange’s contributions to hydrological transport of solutes and sediments, including both the laboratory and field scales. At the laboratory scale, he provided numerous approximations for solute transport accounting for effects of boundary conditions, linear and nonlinear reactions, and means to determine relevant parameters. Theory...
These datasets were used in the prospective meta-analysis of northern spotted owl reproductive rates over 25 years across 11 study areas located throughout the range of the owl. A multi-state occupancy file was created by collapsing site-specific information on owl reproductive status into bimonthly (2 per month) survey occasions. These...
These datasets were used in the prospective meta-analysis of northern spotted owl reproductive rates over 25 years across 11 study areas located throughout the range of the owl. A multi-state occupancy file was created by collapsing site-specific information on owl reproductive status into bimonthly (2 per month) survey occasions. These...
Factors influencing soil organic matter (SOM) stabilization and dissolved organic carbon (DOC) content in complex terrain, where vegetation, climate, and topography vary over the scale of a few meters, are not well understood. We examined the spatial correlations of lidar and geographic information system-derived landscape topography, empirically measured soil characteristics,...
In shallow water, any two waves of the same frequency are shown to produce complex patterns of
drift velocity above the sea bed. If the longshore components λ₁, λ₂ of the wave numbers of the two
waves are different, these steady flow patterns exhibit a longshore periodicity of wave number...
We consider issues of equality and efficiency in two different school funding systems - a state-level system in Michigan and a foundation system in Ohio. Unlike Ohio, the Michigan system restricts districts from generating property or income tax revenue to fund operating expenditures. In both states, districts fund capital expenditures...
Symbiotic relationships between cnidarians and dinoflagellates within the genus
Symbiodinium are critically important for the success of coral reefs. These symbionts
provide their hosts with photosynthetically-fixed carbon in exchange for nutrients
and shelter. Symbiodinium is a phylogenetically diverse genus that is often typed by
sequencing the ribosomal internal transcribed spacer...
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fluorescence
Fast, Cheap
No Sacrificing
Accurate
Instant Results
Image J
-in order to do this we had to
We report evidence for the simultaneous production of J/ψ and Υ mesons in 8.1 fb⁻¹ of data collected at s√=1.96 TeV by the D0 experiment at the Fermilab pp¯ Tevatron Collider. Events with these characteristics are expected to be produced predominantly by gluon-gluon interactions. In this analysis, we extract the effective cross...
Filtration by adult Euphausia pacifica was measured before and during the upwelling season, using both “disappearance of chlorophyll” and “disappearance of cells” techniques. Results show that feeding rates and selectivity varied with food assemblages. Filtration rate (F) was best modeled by the Ivlev function: the average F on total Chl-a...
In the current study a thermally activated cooling system that combines an ORC system with a vapor compression cooling cycle was developed and tested under laboratory conditions. This combined system
can utilize waste heat or other thermal sources such as solar and geothermal to generate power and
cooling. Hot oil...
This technical report summarizes the
results of a three year study of the zooplankton
living in the nearshore zone off
Newport, Oregon. The sampling program was
part of the Early Life History (ELH) project
of the Oregon State University Sea Grant Program
and was designed to study the ecology
of...
Published July 1966. Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog
In this study, we assessed trophic interactions between microplankton and copepods by studying the functional response of egg production rates (EPR; eggs female⁻¹day⁻¹) of the copepod Calanus marshallae to variations in microplankton biomass, species composition and community structure. Female C. marshallae and phytoplankton water samples were collected biweekly at an...
Coastal upwelling in the northern California Current
varies seasonally, with downwelling in winter and upwelling
in summer, resulting in pronounced variability in
hydrography, nutrients, phytoplankton biomass, and species
composition. Winter was characterized by moderate concentrations
of nitrate and silicate (averages of 10 and 18 μM,
respectively) and low concentrations of...
The impact of mesoscale eddies on the spatial distribution of zooplankton biomass was analysed using data from the Arabian Sea and the Black Sea. The highest values of spatial variance of zooplankton biomass in the upper 100 to 150 m were found in regions with maximum available potential energy of...
A low-temperature liquid-to-vapor counterflow microchannel heat exchanger has been redesigned and fabricated using a scalable, low-cost adhesive bonding process. Adhesive erosion concerns are mitigated with the use of sealing bosses. Performance has been tested using water and compressed air as test fluids. Results show greater effectiveness and higher heat transfer...
Fish monitoring programs often rely on the collection, species identification, and counting of individual fish over time to inform natural resource management decisions. Thus, the utility of the data used to inform these decisions can be negatively affected by species misidentification. Fish species misidentification bias can be minimized by confirming...
Simultaneous measurements of vertical velocity fluctuations, w′, and temperature fluctuations, T′, on scales of three-dimensional turbulence yield a direct measure of the turbulent heat flux, J[subscript]q. The scales contributing most significantly to J[subscript]q are tens of centimeters or about 10 times larger than the scales contributing to the turbulent kinetic...
We model the evolution of eukaryotic protein-protein interaction (PPI) networks. In our model, PPI networks evolve by two known biological mechanisms: (1) Gene duplication, which is followed by rapid diversification of duplicate interactions. (2) Neofunctionalization, in which a mutation leads to a new interaction with some other protein. Since many...
This study addresses the occurrence, severity, and extent of hypoxia over the continental shelf of the northern
California Current (40–48.5°N latitude) from 1998 to 2012. Clear seasonal trends exist in the timing and duration
of hypoxia. The highest bottom-water dissolved oxygen concentrations occurred from November to March, and
levels below...
The synchrony between coastal and shelf-slope copepod communities was investigated in the northern California Current (NCC) system, a strong upwelling zone, using time series of zooplankton sampled from a nearshore station (9 km offshore, water depth 62 m) and a shelf-slope station (46 km offshore, water depth 297 m). Long-term...
The accessions used in this study were comprised of 246 snap bean and 49 dry bean genotypes. Of these, 150 snap bean accessions came from the Common Bean Coordinated Agriculture Project Snap Bean Diversity panel, an assemblage of 59 Chinese snap bean genotypes obtained from a trip to China in...
Forty-nine genera and ninty-eight species of Lichenized fungi are reported from the H. J. Andrews Experimental Forest (Oregon). Substrates, growth form, and type of phycobiont are indicated for each taxon.
Recalcitrance to transformation makes genetic engineering of many valuable plants infeasible for practical use. Transitory host modification during transformation using transgenes offers a possible means of overcoming this obstacle. In prior work in our laboratory, the genes GA20ox7 and EBB1 were found to increase regeneration in vitro. In this project,...
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-255. doi:10.1034/j.1399-3054.2003.1170212.x
Long, D., Wu, X., Yang, Z., Lenk, I., Nielsen, K., & Gao
Teacher preparation programs must ensure that course and clinical work provide a solid practice and theoretical foundation upon which new teachers can grow and thrive. Part of this process is the need for theory and research learned in coursework to mesh and enrich classroom practices. In this study we interview...
This data contains results from direct numerical simulations of premixed, three-dimensional, turbulent toluene/air flames, using the multicomponent and mixture-averaged diffusion models. In particular, this dataset contains information about diffusion flux angles and magnitudes. We performed the simulations using the finite-difference code NGA; simulation details are described completely in the associated...
This data contains results from direct numerical simulations of premixed, three-dimensional, turbulent n-heptane/air flames, using the multicomponent and mixture-averaged diffusion models. In particular, this dataset contains information about diffusion flux angles and magnitudes. We performed the simulations using the finite-difference code NGA; simulation details are described completely in the associated...
This data contains results from direct numerical simulations of premixed, two-dimensional unsteady and three-dimensional, turbulent hydrogen/air flames, using the multicomponent and mixture-averaged diffusion models. In particular, this dataset contains information about diffusion flux angles and magnitudes. We performed the simulations using the finite-difference code NGA; simulation details are described completely...
We developed a multiple linear regression model to
robustly determine aragonite saturation state (Ωarag) from
observations of temperature and oxygen (R² = 0.987, RMS
error 0.053), using data collected in the Pacific Northwest
region in late May 2007. The seasonal evolution of Ωarag near
central Oregon was evaluated by applying...
Ocean conditions can greatly impact lower trophic level prey assemblages in marine ecosystems, with effects of ocean state propagating to higher trophic levels. In many regions throughout their range, common murre (Uria aalge) exhibit narrow dietary breadth in feeding chicks and therefore are vulnerable to recruitment failures of dominant prey...
Published October 1966. Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog
Revised July 1997. Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog
Lipid biomarkers in sediments are widely used to infer environmental conditions that have
occurred in the geological past, but these reconstructions require a careful consideration of the
biotic and abiotic processes that degrade and alter the lipid biomarker compositions before
and after deposition. In this paper, we use alkenones produced...
North American freshwater mussels have been subjected to multiple stressors in recent decades that have contributed to declines in the status and distribution of many species. However, considerable uncertainty exists regarding the relative influence of these factors on observed population declines. 2. We used an occupancy modelling approach to quantify...
In a coastal, fog-influenced forest on Santa Cruz Island in southern California, we
observed mortality of Bishop pine (Pinus muricata D.Don) trees following a brief (2 year), yet
intense, drought. While anecdotal evidence indicates that drought-induced Bishop pine mortality
has occurred in the past in the stand we studied, this...
Research on regulatory mechanisms in biological populations often focuses on environmental covariates. An integrated
approach that combines environmental indices with organismal-level information can provide additional insight on
regulatory mechanisms. Survival of spring/summer Snake River Chinook salmon (Oncorhynchus tshawytscha) is consistently
low whereas some adjacent populations with similar life histories experience...
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, Peterson WT, Baptista AM (2014) Assessing the Relative
Importance of Local and Regional Processes on the
Goetze is a common soft white winter wheat variety developed at Oregon State
University in cooperation with the USDA Agricultural Research Service (USDAARS). It is an awned, short-statured, semidwarf variety with moderately early maturity and high yield potential. Goetze is resistant to stripe rust and moderately resistant to Septoria leaf...
Early ocean residence is considered a critical period for juvenile salmon although specific survival mechanisms are often unidentified and may vary by species or life stage. Columbia River spring-run Chinook salmon Oncorhynchus tshawytscha abundance has declined dramatically since the early 1900s. To elucidate mechanisms of early marine survival, we tested...
Post-fire forest management commonly requires accepting some negative ecological impacts from management activities in order to achieve management objectives. Managers need to know, however, whether ecological impacts from post-fire management activities are transient or cause long-term ecosystem degradation. We studied the long-term response of understory vegetation to two post-fire logging...
Fisheries oceanography is the study of ecological relationships between fishes and the dynamics of their marine environments and aims to characterize the physical, chemical, and biological factors that affect the recruitment and abundance of harvested species. A recent push within the fisheries management community is toward ecosystem-based management. Here, we...
Phytoplankton species were enumerated from 72 samples collected biweekly during the upwelling season (May to August) of 2001−2010 to test for effects of interannual variations in upwelling and decadal basin-scale variability on phytoplankton species composition and community structure. Cluster analysis of phytoplankton community structure identified 7 groups; 1 group was...
This data contains results from direct numerical simulations of three-dimensional, premixed, hydrogen/air flames, using the mixture-averaged diffusion model. We performed the simulations using the finite-difference code NGA; simulation details are described completely in the associated article.
Production of Kþ mesons in charged-current νμ interactions on plastic scintillator (CH) is measured using MINERvA exposed to the low-energy NuMI beam at Fermilab. Timing information is used to isolate a sample of 885 charged-current events containing a stopping Kþ which decays at rest. The differential cross section in Kþ...
MOTIVATION: Estimation of bacterial community composition from
a high-throughput sequenced sample is an important task in
metagenomics applications. Since the sample sequence data
typically harbors reads of variable lengths and different levels of
biological and technical noise, accurate statistical analysis of such
data is challenging. Currently popular estimation methods are...
The European green crab (Carcinus maenas) has persisted in Oregon and Washington coastal estuaries since the late 1990’s. After the arrival of a strong year class in 1998, significant recruitment to the populations occurred only in 2005, 2006, 2015, 2016 and 2017. Warm winter water temperatures, high Pacific Decadal Oscillation...
Motivation:
Estimation of bacterial community composition from high-throughput sequenced 16S rRNA gene amplicons is a key task in microbial ecology. Since the sequence data from each sample typically consist of a large number of reads and are adversely impacted by different levels of biological and technical noise, accurate analysis of...
Historical forest harvesting practices were reviewed in the original Alsea Watershed Study where they found increased energy
loading to the stream and produced higher stream temperatures. This was an important early research site that led to the
development of contemporary forest management practices to protect water quality and fish habitat...
This report lists 98 microfungi found in the H. J. Andrews Experimental Forest, Lane County, Oregon, between June 1970 and
August 1972. The taxonomic treatments of the Ascomycetes and the Fungi Imperfecti in general follow Dennis (1968) and Barnett (1960), respectively. Specimens are deposited in the herbarium at Oregon State...
Early in the planning of the Coniferous Biome research program, it was recognized that Experimental Watersheds 6, 7, and 8 in the
H. J. Andrews Experimental Forest might provide ideal study sites for certain phases of the Biome program. A study was funded during year 1 (1970) to provide necessary...
We modeled patch occupancy to examine factors that best predicted the prevalence of four functionally important focal stream consumers (Tallaperla spp., Cambarus spp., Pleurocera proxima, and Cottus bairdi) among 37 reaches within the Little Tennessee River basin of the southern Appalachian Mountains, USA. We compared 34 models of patch occupancy...
Stem mapping of all trees greater than 15 cm dbh has
been completed on the 10.24 hectare watershed (No. 10) at H. J.
Andrews intensive study site. Using a 25 m grid system, mapping
of vegetation into 7 plant communities and then into 4 habitat
types has also been completed....
We are conducting studies on the impacts of parasites on Oregon coastal coho salmon (Oncorhynchus kistuch). An essential first step is documenting the geographic distribution of infections, which may be accomplished by using different methods for parasite detection. Thus, the objectives of the current study were to (1) identify parasite...
The community of trophically transmitted marine parasites of juvenile coho (Oncorhynchus kisutch) and Chinook
(Oncorhynchus tshawytscha) salmon across 8 years (2002–2009) was related to indices of physical and biological ocean conditions
and adult returns. When the biomass of lipid-poor, southern origin copepods in the coastal ocean was high during juvenile...
River Influences on Shelf Ecosystems (RISE) is the first comprehensive
interdisciplinary study of the rates and dynamics governing the mixing of river and coastal
waters in an eastern boundary current system, as well as the effects of the resultant plume
on phytoplankton standing stocks, growth and grazing rates, and community...
Seabirds have often been proposed as environmental indicators. Beached bird data may provide an additional data source and such data is efficacious because it can reliably be collected by volunteers. In addition to anthropogenic factors, such as oil spills, changes in the ocean-atmosphere can affect carcass beaching rate in 3...
Published June 1965. Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog
Cranberry plants require proper amounts of certain chemical elements from air, water, and soil to ensure adequate vegetative growth and fruit production. When levels of these nutrients in the plant are low, growth and yield may be affected.
Atrazine (ATZ) is a selective triazine herbicide used primarily for pre-emergent weed control in corn, sorghum and sugar cane production. It is one of the most widely used herbicides in North America. Some research published over the last decade suggests that chronic exposure to environmentally relevant ATZ concentrations can adversely...
We present new age determinations, derived from ⁴⁰Ar–³⁹Ar incremental heating experiments, for basaltic lava flows from the Mandla lobe, located on the eastern margin of the main Deccan volcanic province, some ~ 1000 km from the Western Ghats escarpment. The most reliable estimates of crystallization ages come from 5 plateau...
Polycrystalline ferroelectric lead-free 85 mol% (Bi₀.₅Na₀.₅)TiO₃–10 mol% (Bi₀.₅K₀.₅)TiO₃–5 mol% BaTiO₃ (85BNT–10BKT–5BT) thin films were fabricated via chemical solution deposition on platinized silicon substrates. The permittivity and dielectric loss at 1 kHz were 610 and ∼3.5%, respectively. The ferroelectric properties at room temperature and as a function of the temperature up...
The nonexponential phosphorescence decay of a highly folded form of poly-riboadenylic acid (poly rA) with noncovalently bound dye is explained by a novel application of a well-known theory of electronic excitation transfer based on the Förster mechanism. This theory, originally used to describe singlet-singlet energy transfer from donor molecules to...
Forest surveys provide critical information for many diverse interests. Data are often collected from samples, and from these samples, maps of resources and estimates of aerial totals or averages are required. In this paper, two approaches for mapping and estimating totals; the spatial linear model (SLM) and k-NN (k-Nearest Neighbor)...
The seasonality of sea surface temperatures (SST) estimated from the alkenone-U[superscript K’]₃₇ index has been a debated issue since the development of the sediment trap time series data from 34 sampling locations, we show that the maximum alkenone flux in sediment traps varies markedly across the oceans, only on latitude...
This data contains results from direct numerical simulations of three-dimensional, premixed, hydrogen/air flames, using the multicomponent diffusion model. We performed the simulations using the finite-difference code NGA; simulation details are described completely in the associated article.
The data is a JSON format file containing the position, velocity, and fish identifier data for 300 golden shiners in a shallow (depth of 4.5 to 5 cm) rectangular water tank (2.1 by 1.2 meters). There are 5000 individual frames (samples of position and velocity) corresponding to video taken at...
Norwest 553 is a common hard red winter wheat variety developed by Oregon State University and Nickerson U.K. in cooperation with USDA-ARS. It is an awned, short-statured, semidwarf variety with high-yield potential and good milling and baking quality. Norwest 553 is resistant to stripe rust and tolerant to Fusarium crown...
Few studies to date have demonstrated widespread biological impacts of ocean
acidification (OA) under conditions currently found in the natural environment.
From a combined survey of physical and chemical water properties
and biological sampling along the Washington–Oregon–California coast in
August 2011, we show that large portions of the shelf waters...
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in the California Current
Ecosystem
Bednaršek, N., Feely, R. A., Reum, J. C. P., Peterson, B
Infection with Helicobacter pylori is a major risk factor for the development of gastric cancer, and infection with strains carrying the virulence factor CagA significantly increases this risk. To investigate the mechanisms by which CagA promotes carcinogenesis, we generated transgenic zebrafish expressing CagA ubiquitously or in the anterior intestine. Transgenic...
Alongshore transport was estimated from the gridded AVISO altimeter data and water level data from NOAA tide gauges (1993–2010) for the northern California Current (NCC) system. The biomass of the cold neritic copepods including Calanus marshallae, Pseudocalanus mimus and Acartia longiremis (dominants in the eastern Bering Sea, coastal Gulf of...
Many pharmaceuticals have negative effects on biota when released into the environment. For example, recent work has shown that the commonly prescribed antidiabetic drug, metformin (N,N-dimethylbiguanide), has endocrine disrupting effects on fish. However, effects of metformin on aquatic primary producers are poorly known. We exposed cultured isolates of a freshwater...
We examine the utility of the uranium (U) content of planktonic foraminifera tests as an indicator of past changes in seawater U content. The U/Ca ratio in foraminifera from Atlantic and Caribbean cores in constant in the Holocene and decreases by ~25% during the last glacial period. Magnesium/calcium (Mg/Ca) ratios...
The Antarctic krill (Euphausia superba Dana 1852) is widely distributed throughout the southern ocean, where it provides a key link between primary producers and upper trophic levels and supports a major commercial fishery. Despite its ecological and commercial importance, genetic population structure of the Antarctic kill remains poorly described. In...
1. The evaluation of the age and growth of animal populations is essential for understanding and
predicting how populations will respond to changes in environmental conditions and anthropogenic
stressors.
2. We used a novel, von Bertalanffy hierarchical modelling approach to quantify relationships between
the growth of three freshwater mussel species...
Larval supply determines year-class strength of fisheries and complex ecological
interactions among adults of benthic marine species. In upwelling regions, a latitudinal cline in
the intensity and persistence of upwelling is thought to affect larval advection and recruitment,
thereby regulating the intensity of interactions in adult populations and communities. We...
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characterized by
strong El Niño conditions (Peterson et al. 2002).
Upwelling was weakest in 2010 during a
Generalized additive models (GAMs) were used to investigate the relationships between annual recruitment of natural coho salmon (Oncorhynchus kisutch) from Oregon coastal rivers and indices of the physical ocean environment. Nine indices were examined, ranging from large-scale ocean indicators, e.g., Pacific Decadal Oscillation (PDO), to indicators of the local ecosystem...