This report, Crisis in Oregon Estuaries, is published by the Oregon State University Extension Marine Advisory program in connection with the National Science Foundation's Sea Grant program. Information in the report was provided by the Estuary Conservation and Development Committee of the Oregon chapter of the American Fisheries Society, an...
This study represents an internship, as a requirement of the Professional Science Masters program at Oregon State University, performed with Western Ag Innovations Inc. The study consisted of two aspects -- one business and one science oriented. The two objectives of this internship were to: 1) qualitatively evaluate how two...
Non-toxic species of desiccated blue-green algae, or cyanobacteria, may offer potential for use as a fertilizer on irrigated crops. Here, the non-toxic cyanobacteria species Aphanizomenon flos-aquae (AFA), collected from Upper Klamath Lake, Oregon, was evaluated for use as a biofertilizer in a controlled experiment on Swiss chard “Bright Lights” (Beta...
Log and core data document gas saturations as high as
90% in a coarse-grained turbidite sequence beneath the gas
hydrate stability zone (GHSZ) at south Hydrate Ridge, in the
Cascadia accretionary complex. The geometry of this gas-saturated
bed is defined by a strong, negative-polarity
reflection in 3D seismic data. Because...
A scaling analysis of the Oregon State University (OSU) - Multi-Application Small Light Water Reactor (MASLWR) system has been developed, and an existing RELAP5-3D model of the facility was improved. The purpose of this study is to support the research of hybrid energy systems, being led by Idaho National Laboratory...
The sensitivity of the Northeast Greenland Ice Stream (NEGIS) to prolonged warm periods is largely unknown and geological records documenting such long-term changes are needed to place current observations in perspective. Here we use cosmogenic surface exposure and radiocarbon ages to determine the magnitude of NEGIS margin fluctuations over the...
Many important application problems can be formalized as constrained non-linear optimization tasks. However, numerical methods for solving such problems are brittle and do not scale well. Furthermore, they do not provide much insight into the structure of the problem space. This paper describes a method for discovering efficient rules that...
BACKGROUND: Parents play a significant role in shaping youth physical activity (PA). However, interventions targeting PA
parenting have been ineffective. Methodological inconsistencies related to the measurement of parental influences may be a
contributing factor. The purpose of this article is to review the extant peer-reviewed literature related to the measurement...
Aerobic organisms have evolved many sensory mechanisms that allow
response to oxidants in the environment. One area of interest is the relationship
between the activity of the tumor suppressor protein p53 and the redox state of
thioredoxin. Human p53 activity is severely compromised in budding yeast lacking
thioredoxin reductase. Evidence...
Wave energy conversion devices are a rapidly growing interest worldwide for the potential to harness a sustainable and renewable energy source. Due to the oscillatory nature of ocean waves, the power generated from a permanent magnet linear generator (PMLG) for ocean wave energy conversion is pulsed. Focusing on direct drive...
The coverage of a learning algorithm is the number of concepts that can be learned by that algorithm from samples of a given size for given accuracy and confidence parameters. This thesis begins by asking whether good learning algorithms can be designed by maximizing their coverage. There are three questions...
Indigenous cultures perceive the natural environment as an essential link between traditional cultural
practices, social connectedness, identity, and health. Many tribal communities face substantial health
disparities related to exposure to environmental hazards. Our study used qualitative methods to better
understand the Confederated Tribes of the Umatilla Indian Reservation (CTUIR) members’...
The development of cross-laminated timber (CLT) panel technology has opened up new opportunities for wood in tall buildings. Several characteristics including seismic performance and speed of construction have raised interest among designers. As CLT gains acceptance in the industry, alternative structural solutions need to be investigated to improve performance of...
The research presented in this dissertation addresses the Multi-Mode Resource-Constrained Project Scheduling Problem (MMRCPSP) in the presence of resource unavailability. This research is motivated by the scheduling of engineering design tasks in automotive product development to minimize the project completion time, but addresses a general scheduling situation that is applicable...
This research addresses sample process variance estimation on continuous domains and for non-probability samples in particular. The motivation for the research is a scenario in which a program has collected non-probability samples for which there is interest in characterizing how much an extrapolation to the domain would vary given similarly...
This study examined features of deep pool (>0.8 m mean depth) used by
adult summer steelhead in Steamboat Creek (1991-1992). Steamboat Creek had
a heterogenous thermal profile, with some segments exceeding preferred
temperature of steelhead. Deep pools were scarce (4% of the total habitat units)
and 39% of them were...
The distribution of total phenolics, antioxidant capacity, monomeric anthocyanin, and ascorbic acid contents in the peel and flesh of Red Delicious, Granny Smith, and Fuji apples during a six-month storage period were determined. In addition, the effect of 1-MCP (1-Methyl cyclopropene) on these parameters of the edible portion of apples...
Marine protected areas (MPAs) are increasingly being used as a conservation tool for highly mobile marine vertebrates and the focus is typically on protecting breeding areas where individuals are aggregated seasonally. Yet movements during the non-breeding season can overlap with threats that may be equally as important to population dynamics....
An introduced population of European green crabs Carcinus maenas was established in San Francisco Bay (California, USA) prior to 1989. Subsequently, their larvae were likely carried northward into the embayments of Oregon, Washington (USA), and British Columbia (Canada) by the unusually strong Davidson Current during the winter of the El...
Background and motivation: The high-throughput genomics communities have been successfully using standardized spreadsheet-based formats to capture and share data within labs and among public repositories. The nanomedicine community has yet to adopt similar standards to share the diverse and multi-dimensional types of data (including metadata) pertaining to the description and...
Nest counts from the largest subpopulation of the loggerhead sea turtle (Caretta caretta) in the Atlantic, peninsular Florida, have been declining since 1998. Analyzing trends of nests and adult females is insufficient to determine the overall status of a sea turtle population, due to variation in nesting frequency and a...
Understanding the interplay between environmental conditions and phenotypes is a fundamental goal of biology. Unfortunately, data that include observations on phenotype and environment are highly heterogeneous and thus difficult to find and integrate. One approach that is likely to improve the status quo involves the use of ontologies to standardize...
The sea offers a wide variety of potentially useful resources. Marine algae have been a rich source of structurally unique natural products showing diverse biological properties. The current need to develop new antifungal, antibiotic, anticancer and antiviral drugs has prompted intense research efforts into the discovery, isolation and structure determination...
High data rate transmission has become an important challenge in today digital communication systems. One of the most difficult problems faced by engineers is to transmit data at sufficiently high rates through fading channels. This is the main motivation for the research presented herein. In this thesis, we investigate a...
Antagonistic effects of Epicoccum purpurascens,
Aureobasidium pullulans, Trichoderma spp., and Botrytis
cinerea on establishment of Monilinia fructicola infections
in cherry and peach blossoms were assessed in field and mist
chamber studies. Conidia of each fungus were applied to
blossoms that were subsequently inoculated with conidia of
M fructicola. Mist chamber...
This study was designed to measure the results on public
school teachers of training in three teaching systems. The results
of the study were intended to provide evidence that might be used
for designing a single system which would bring together the most
effective aspects of each of the systems...
The distribution of herring (Clupea harengus pallasi) in
the Northeast Pacific extends from southern California to
northern Alaska. Studies on variation in herring life-history
are limited to local
characteristics and recruitment
populations or relatively restricted regions of the Northeast
Pacific. In this study I assessed herring life-history
patterns and recruitment...
To investigate the responses of healthy adult women to two
levels of vitamin B-6, a seven week two-part experiment was conducted
with five young adults and eight middle-aged subjects. During the
four unsupplemented weeks, dietary vitamin B-6 was 2.3-2.4 mg/day.
In the final three weeks, the same diet was supplemented...
The spermiogenesis of Mytilus edulis (a marine mussel) has
been studied, employing techniques of light and electron microscopy
and cytochemical preparations. The observations trace the development
of the acrosomal complex, the nucleus, the mitochondrial
middle-piece, and the flagellum.
In early spermatids numerous membrane-bounded proacrosomal
vesicles arise from several Golgi complexes...
Agrobacterium rhizogenes has been shown to cause root
proliferation and increased water use efficiency in
certain woody dicots. Root proliferation may be desirable
in herbaceous legumes as a means of increasing potential
sites for infection by Rhizobium species and subsequent
nodulation and nitrogen fixation. Thus, A. rhizogenes was
used to...
Fair value accounting has become a very popular and controversial topic in light of the 2008-2009 liquidity crisis in the United States. Fair value, also called mark-to-market, implies that assets and liabilities get measured and reported in firms‘ financial statements at market value as opposed to historical value. This study...
Swash zone processes are of significant importance to foreshore morphologic change. This thesis addresses the importance of the uprush and backwash fluid motions and flow duration effects to the resulting sediment transport. The analysis relates the field observations to well known sediment transport formulations as well as investigates the importance...
The increased US domestic production of surimi from the US Pacific Coast after 1977 is a major consequence of the US's extended fisheries jurisdiction to 200 nautical miles. It is only one consequence, however, whose nature can best be understood by examining the surimi market in the context of what...
This thesis will cover work that I have completed relating to the field of terahertz (THz) science. My work has consisted of generating tunable, narrowband THz pulses in a table-top optical setup and using both narrow- and broadband THz pulses to study various material systems. Broadband THz pulses were used...
In many geotechnical design situations involving tight right-of-way constraints, Mechanically Stabilized Earth (MSE) walls are often the most cost-effective and reliable earth retention technology among available alternatives. However, few well-documented case histories with detailed material testing, instrumentation programs and construction observation of performance are available in the literature. Despite the...
My work has focused on using density functional theory to elucidate mechanisms of organocatalytic and transition metal catalyzed reactions by considering competing mechanisms. In each of the three presented studies computational investigation complemented experimental work by predicting stereoselectivity or revealing origins of stereo, regio, or chemoselectivity.
A study on the...
Recombinant human macrophage colony stimulating factor beta (rhm-CSFβ) is a glycoprotein that stimulates the proliferation, differentiation and survival of cells belonging to the monocyte-macrophage lineage. It contains nine inter-subunit and intra-subunit disulfide bonds and represents an excellent model system for studying disulfide bond formation during protein folding because the assembly...
The last five decades of research in arid land ecology cites Invasive species as a source of imbalances in biodiversity through habitat destruction and reductions of native species through ecosystem alterations in favor of non-native species. Invasive species are known to damage not only the surrounding ecosystem but also cause...
Species are one of the foundational units upon which entire fields of scientific inquiry are built. Discovering and documenting the planet’s biodiversity remains one of the grand challenges of science. A proper conceptualization of species provides a critical framework for diverse fields such as biophysics, biochemistry, agriculture and pharmacology, and...
The purpose of the study was to develop a system and procedure for classifying and cataloguing the textile, costume, and slide collections of the Clothing, Textile, and Related Arts (CTRA) Department at Oregon State University. Investigation was made by letter, personal visit, interview with faculty and curators, and literature research...
An Invasive Plant Management Plan developed for Big Sur Land Trust, a non-profit conservation organization located on California's Central Coast, to guide its vegetation management activities and serve as a decision-support tool. The effort included the creation of a digital field data collection tool through Survey123 Connect, survey and data...
In early 2000, the Generation IV International Forum (GIF) was created to perform research and development for the next generation nuclear systems. Among the selected nuclear systems was the Very High Temperature Gas-Cooled Reactor (VHTR). Then in 2008, the U.S. Department of Energy (DOE) decided that the Next Generation Nuclear...
fIndoor wireless local area networks (LAN's) and personal area networks (PAN’s) have evolved very rapidly in the recent past. The indoor wireless LAN's are mainly dominated by narrow-band technologies like the IEEE 802.11a,b which are short range and provide data rates of 1 Mbps to 54 Mbps. The Bluetooth has...
Lampreys (Petromyzontiformes) have persisted over millennia and now suffer a recent decline in abundance. Complex life histories may have factored in their persistence; anthropogenic perturbations in their demise. The complexity of life histories of lampreys is not understood, particularly for the anadromous Pacific lamprey, Entosphenus tridentatus Gairdner, 1836. Our goals...
Fishing nets have been used for thousands of years by those who seek food from the sea or make their living by catching fish.
In the early days suitable knots had to be devised before a net could be made. Its size was determined by the availability of suitable materials...
There will be winners and losers as climate change alters the habitats of polar organisms. For an Adelie penguin (Pygoscelis adeliae) colony on Beaufort Island (Beaufort), part of a cluster of colonies in the southern Ross Sea, we report a recent population increase in response to increased nesting habitat as...
Along the Pacific coast of North America, from Alaska to Mexico, harmful algal blooms (HABs) have caused losses to natural resources and coastal economies, and have resulted in human sicknesses and deaths for decades. Recent reports indicate a possible increase in their prevalence and impacts of these events on living...
In normal human cells, oncogene-induced senescence (OIS) depends on induction of DNA damage response (DDR). Oxidative stress and hyper-replication of genomic DNA have been proposed as major causes of DNA damage in OIS cells. Here we report that down-regulation of deoxyribonucleoside pools is another endogenous source of DNA damage in...
Clinicians make a variety of judgments about their clients, from judging personality traits to making diagnoses, and a variety of methods are available to do so, ranging from observations to structured interviews. A large body of work demonstrates that from a brief glimpse of another’s nonverbal behavior, a variety of...
Successfully shifting to a more piscivorous diet may be an important factor in the growth and survival of juvenile coho salmon Oncorhynchus kisutch and Chinook salmon O. tshawytscha during their first summer in the northern California Current. Nonmetric multidimensional scaling and cluster analysis of diets by size showed several distinct...
WaRSwap is a randomization algorithm that for the first time provides a practical network motif discovery method for large multi-layer networks, for example those that include transcription factors, microRNAs, and non-regulatory protein coding genes. The algorithm is applicable to systems with tens of thousands of genes, while accounting for critical...
A control program restricting the use of second generation
cephalosporins was evaluated.
A retrospective cephalosporin use review was conducted at two
large teaching hospitals; the Veterans' Administration Medical
Center (VAMC) and the Oregon Health Sciences University (OHSU). A
control program restricting the use of second generation cephalosporins
was in operation...
Marine mammals are top predators that are essential for the health and function of our oceans. These top predators are often affected by various factors that can be detrimental to their populations. Therefore, there is a need to evaluate undetermined causes of deaths and to better understand known diseases in...
White mold, caused by Sclerotinia sclerotiorum (Lib.) de Bary, results in severe losses in the production of common bean, Phaseolus vulgaris, especially snap bean varieties. Advanced backcross QTL analysis was used to identify quantitative trait loci for resistance to white mold in an interspecific cross of P. vulgaris and P....
The sinuous flight behavior of male Douglas-fir tussock
moths, Orgyia pseudotsugata, (McD.), is characterized by
positive anemotaxis and positive chemoklinotaxis and varies
depending on distance from the pheromone source, population
density, and time of day. Visual cues play a minor role
in close-range orientation to a pheromone source, but
males...
A prototype deep ocean nuclear moisture meter was developed
based on the detection of epithermal neutrons backscattered from
marine sediment molecules. Development consisted of choosing a
source, a detector, containment materials, and associated counting
equipment, followed by the construction and calibration of the probe.
Thermal neutron response of the probe...
Twentieth century commercial whaling drastically reduced the abundance of great whale populations in the Southern Ocean. Exploitation began on the south Atlantic island of South Georgia, where catch records account for over 175,000 whales killed. Modern whaling within the Southern Ocean depleted populations rapidly, and by 1966, hunting blue whales...
The dynamic response of an offshore structure to measured and simulated
stochastic wave forces is investigated. The theoretical nondeterministic
analysis is performed in the frequency domain for a two-dimensional
model. The ocean wave system is assumed to be a zero mean, stationary,
ergodic Gaussian process described by a one-dimensional wave...
The objective of the thesis is to present data upon which the management of the Oregon otter-trawl fishery can be based. In addition, a history of the Oregon trawl fishery is presented. A summary of gear development by many of the vessels in the Oregon fleet is presented in table...
The Queen Charlotte Fault system is a segment of the North America - Pacific
plate boundary. From 45 Ma - 5 Ma, plate motion has been primarily translational.
Since 5 Ma, transpression has been the dominant mode of interaction. The plate
boundary west of the Queen Charlotte Islands is characterized...
The fouling characteristics of simulated cooling tower water flowing over a heated metallic surface has been studied. The bulk temperature of the water was maintained around 95°F. Mainly three different water qualities with respect to calcium hardness level were investigated. The pH was controlled by the addition of hydrochloric acid....
This study was to investigate effects of growth rate
and cambial age on properties of wood from two increasingly
used hardwood species, red alder (Alnus rubra Bong.) and
Oregon white oak (Quercus garryana Dougl.), for better
understanding factors affecting wood quality in hardwoods.
Thirty 7-year-old trees grown at widely varying...
Many people enjoy going to the beach, but few know how the tides work. People who earn their living on the sea have a special need to understand the tides; the rest of us need to understand the tides for different reasons. Knowing how tides work can help us avoid...
The increasing move to citizen participation in policy formulation is being witnessed in European fisheries. The emergence of the Regional Advisory Councils (RACs) and other processes via the reformed Common Fisheries Policy (CFP) is sparking hope and interest in more regionally relevant, holistic, and hopefully workable fisheries management measures. In...
Oregon ocean shrimp annual harvest relies on the successful recruitment and growth of age one shrimp. Changes in oceanic conditions appear to have major impacts on recruitment, spatial abundance and growth rates. Successful recruitment has been identified with the timing and strength of the spring transition generating oceanic conditions favorable...
A study was conducted to identify geographical variation in loblolly pine bark and wood properties at the whole-tree level and to quantify the responses in whole-tree
bark and wood properties following contrasting silvicultural practices that included planting density, weed control, and fertilization. Trees were destructively sampled from
both conventionally managed...
Reforesting harvested lands in southwestern Oregon has been
difficult because of low rainfall, high evaporative demand, and
competitive understory vegetation. Herbicides have been a preferred
method to control competing vegetation but herbicide use on federal
lands was curtailed in 1984. As a result, interest in livestock
grazing as a vegetation...
A method for isolating the salt gland (SG) from the larval brine
shrimp has been developed. This extra-renal organ is removed from 5-10%
of Stage Inauplii by vortexing after incubating the animals at 37°C for
8 hours in a saline solution buffered with 100 mM sodium phosphate at pH
7.6....
Substations are a crucial element at the transmission and distribution level of electric power systems. The primary substation equipment (power transformers and high voltage switching equipment) is used to transfer and transform electric energy by stepping up or down the voltage in transmission substations. Secondary equipment (such as IEDs, Intelligent...
Novel mucosal vaccines (LL-M2e, LL-HAe, SG-HAe) were constructed from live, non-pathogenic Lactococcus lactis or Streptococcus gordonii that express conserved regions of HA or M2 antigens from avian influenza virus (AIV) A. All three vaccines evoked antigen-specific serum immunoglobulin G (IgG) responses in vaccinated chickens. The addition of the adjuvant cholera...
In rodent models as well as in fish models there are significant
species differences in the susceptibility toward aflatoxin B₁ (AFB₁)
carcinogenesis. Mouse is less susceptible toward AFB₁ carcinogenesis
than rat. Researchers have come to the conclusion that the lower
susceptibility of mice is not a result of less effective...
The paper discusses compilation of economic accounts for wild fish stocks. The methods proposed in the System of National Accounting (SNA) satellite system, the System for Integrated Environmental and Economic Accounting (SEEA) are discussed and their usefulness assessed in simple examples. The paper proposes some methods for estimating the value...
Among the questions that ecosystem-based management raises for economists is how to partition uses of the many biological, chemical and physical attributes of marine ecosystems into sets of property rights that undergird total ocean wealth. An elemental basis of property rights for fisheries involves the interplay between ecological and technological...
Reflux condensation tests examining steam condensation in a PWR steam
generator (SG) were conducted at the Oregon State University (OSU) Advanced
Plant Experiment (APEX) Test Facility from 2005 through 2007. The
experimental data collected will provide a basis to assess TRACE steam generator
modeling techniques and assist in development of...
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examining steam condensation in a PWR steam
generator (SG) were conducted at the Oregon State University
Birth and pupping season records of Pacific harbor seals
(Phoca vitulina richardsi) were used in an analysis of
photoperiod effect on the timing of birth in this species. Dates
and latitudes of births were converted into photoperiods using a
photoperiod equation. Sequential dates from parturition were
converted into photoperiods and...
The metabolism of pyrrolizidine alkaloids and other
drugs was studied with regard to nutritional status and
species differences. Pyrrolizidine alkaloids which are biotransformed
to severely toxic metabolites were isolated
from tansy ragwort (Senecio jacobaea). Semi-purified alkaloid
crystals containing five alkaloids (senecionine, seneciophylline,
jacobine, jacoline, and jacozine) were prepared
and found...
The Advanced Test Reactor (ATR) is conducting
scoping studies for the conversion of its fuel from a
highly enriched uranium (HEU) composition to a low-enriched
uranium (LEU) composition, through the
Reduced Enrichment for Research and Test Reactors
Program, within the Global Threat Reduction Initiative.
These studies have considered a wide...
Forest health issues are on the rise in the United States, resulting from introduction of alien pests and diseases, coupled with abiotic stresses related to climate change. Increasingly, forest scientists are finding genetic/genomic resources valuable in addressing forest health issues. For a set of ten ecologically and economically important native...
Dissolved organic matter (DOM) in the oceans is one of the largest pools of reduced carbon on Earth, comparable in size to the atmospheric CO₂ reservoir. A vast number of compounds are present in DOM, and they play important roles in all major element cycles, contribute to the storage of...
Four decades after the passage of the US Clean Air Act, air-quality standards are set to protect ecosystems from damage caused by gas-phase nitrogen (N) and sulfur (S) compounds, but not from the deposition of these air pollutants to land and water. Here, we synthesize recent scientific literature on the...
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nitrogen addition to
an oak forest. Ecosystems 14: 615–31.
McNulty SG, Cohen EC, Myers JAM, et al. 2007