Focus is published by Oregon State University College of Forestry. Our goal is to keep Forestry alumni, friends, faculty, staff, and students informed about the College of Forestry and its many activities and programs.
The Northern Rubber Boa (Charina bottae) is a small, secretive boa native to the Pacific Northwest. Despite this being possibly the highest latitude boas and one of only two boas native to the continental U.S., it has received surprisingly little attention. Most of the research on the natural history of...
2020 and 2021 brought the first reported outbreaks of salmonellosis epidemiologically linked to dry bulb onions in the United States. Outbreak investigations were not able to implicate a specific source of the contamination but speculated that contaminated water was a significant contributor. The Produce Safety Rule established minimum standards for...
Geospatial data analysis is a multifaceted discipline encompassing the collection, processing, and visualization of diverse datasets. It models and delineates the interactions of people, objects, and phenomena within geographical spaces and predicts patterns based on the relationships between different locations. Despite significant advancements in geospatial data engineering and analytics over...
Oregon's estuaries are important ecosystems for scientific study. Consequently, knowledge of what research has been conducted helps us identify benchmarks and plan new projects. A comprehensive bibliography of published research, technical reports, local documents, and data sets is one means of recording this knowledge. For these reasons, the Guin Library...
Oregon's estuaries are important ecosystems for scientific study. Consequently, knowledge of what research has been conducted helps us identify benchmarks and plan new projects. A comprehensive bibliography of published research, technical reports, local documents, and data sets is one means of recording this knowledge. For these reasons, the Guin Library...
Oregon's estuaries are important ecosystems for scientific study. Consequently, knowledge of what research has been conducted helps us identify benchmarks and plan new projects. A comprehensive bibliography of published research, technical reports, local documents, and data sets is one means of recording this knowledge. For these reasons, the Guin Library...
Oregon's estuaries are important ecosystems for scientific study. Consequently, knowledge of what research has been conducted helps us identify benchmarks and plan new projects. A comprehensive bibliography of published research, technical reports, local documents, and data sets is one means of recording this knowledge. For these reasons, the Guin Library...
Oregon's estuaries are important ecosystems for scientific study. Consequently, knowledge of what research has been conducted helps us identify benchmarks and plan new projects. A comprehensive bibliography of published research, technical reports, local documents, and data sets is one means of recording this knowledge. For these reasons, the Guin Library...
Oregon's estuaries are important ecosystems for scientific study. Consequently, knowledge of what research has been conducted helps us identify benchmarks and plan new projects. A comprehensive bibliography of published research, technical reports, local documents, and data sets is one means of recording this knowledge. For these reasons, the Guin Library...
Research relying on remotely sensed data on land use and deforestation has exploded in recent years. While satellite-based measures have clear advantages in terms of coverage, the presence of measurement error within these products is often overlooked. Here, we detail the econometric implications of these errors when analyzing the determinants...
The RV Ronald H. Brown traveled a section of tropical Atlantic waters northeast of Barbados during January-February 2020 in an international collaboration effort known as Elucidating the Role of Clouds Circulation Coupling in Climate Campaign (EUREC4A). ATOMIC (Atlantic Trade-wind Ocean–Atmosphere Mesoscale Interaction Campaign) was the US contribution to EUREC4A focused...
A secret sharing scheme allows a dealer to distribute a secret with a set of parties, such that only a certain subset of parties can collaborate and learn the shared secret. Traditional secret sharing schemes have been used as building blocks in various subdomains of cryptography. Recently, two new extensions...
One of the pervasive problems arising in our modern, digital world surrounds data breaches where an adversary, through zero-day exploitations, phishing, or old-fashioned social engineering attacks, gains access to a service’s data stores. Our society increasingly relies on these cloud-based services for everything from our taxes to personal communication. As...
While digital inclusivity researchers and software practitioners have been trying to address exclusion biases in Windows, Icons, Menus, and Pointers (WIMP) user interfaces (UIs) for a long time, little has been done to investigate if and how inclusive software design and its methods that have been devised for WIMP UIs...
Physicists solve problems and communicate their work using many external representations, such as equations, words, diagrams, graphs, sketches, pictures, and more. To learn physics, then, students must learn to use external representations. In this dissertation, I present three manuscripts. Each manuscript discusses how upper-division Paradigms in Physics students use multiple...
In the United States, children from underserved racial/ethnic backgrounds encounter greater environmental risk both in terms of the physical environment (e.g., housing quality, access to resources like health services and jobs, and exposure to environmental toxins) and the social environment (e.g., social support, neighborhood crime, racism, and discrimination), due to...
The objective of this dissertation is to enhance the monitoring of forest ecosystems through the utilization of remotely sensed data to address the exigencies posed by the Anthropocene. On a global scale, rising temperatures and fluctuating precipitation patterns have strained forests and produced shifts in natural disturbance regimes. Additionally, the...
Toxin production by cyanobacterial harmful algal blooms (cyanoHABs) in freshwater systems has lasting ecological and human impacts. Nutrients, light availability, hydrology, and microbial community composition impact the frequency and intensity of toxic cyanoHABs. Climate change will exacerbate toxic cyanoHABs, making real time and predictive monitoring a vital tool for managing...
Molten salts have been targeted as a promising coolant for next generation reactors due to their high boiling point, heat capacity, and thermal conductivity. Despite these benefits, molten salt systems present unique materials compatibility issues, highlighted by the aggressive corrosion attack and dealloying typically seen on materials in these environments....
Cabbage maggot, Delia radicum (Diptera: Anthomyiidae) impacts the production of Brassicaceae crops worldwide. The larva feed on the roots of crops causing reductions in yields due to impaired root function and unmarketability of crops. Chemical and cultural management programs are commonly used to control cabbage maggot with varying rates of...
Secure Computation is a powerful tool that enables a set of parties to jointly compute any function over their private inputs, without a trusted third party. Private Set Intersection is a specific case of two-party Secure Computation, where Alice (with private set X) and Bob (with private set Y) specifically...
Ocean deoxygenation is predicted to increase in severity over the next few decades, posing a threat to marine life and fishing economies. Improved predictions of ocean deoxygenation depend on a better understanding of the biogeochemical mechanisms that underly this process. Within the realm of biogeochemical mechanisms, this project specifically investigated...
Expressive motion has been found to be a highly effective tool in communicating intent and motivation in single robot human-robot interaction, but work in exploring how groups of robots can use motion in interactions with humans is relatively nascent. There are many additional complexities to consider expanding from single robot...
Oomycete and fungal pathogens threaten food, fiber, and forests around the world. With climate change, these pathogens are expected to emerge more frequently. Evolution can facilitate their emergence through mechanisms such as mutations that change or expand host range. Characterizing evolutionary mechanisms in plant pathogens will contribute to our ability...
Rhizopogon salebrosus is an abundant ectomycorrhizal fungus common throughout Western North America that forms mutualistic partnerships with Pinus species. Studied for its systematics, use in sapling nurseries, post-fire seedling establishment, and unique evolutionary history, R. salebrosus holds many secrets within its genome. This thesis aims to characterize the mating system,...
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Alexandra Weisberg, Committee Member, representing Department of Botany and Plant
Pathology
This dissertation develops a framework for Curandera feminism, informed by familial healing practices, women of color feminisms, and institutional critique. My research centers my family’s generational Curandera practices. As I honor the call to be critical of the master’s tools, I seek possibilities for institutional change through Curandera feminism. Institutions...
Production of fresh produce takes place outdoors, and therefore, is exposed to many routes of contamination (e.g., soil, contaminated water, manure, etc.) by human pathogens. Although precautions are taken to reduce this risk, pathogens can be regularly introduced to produce handling facilities. To manage the risk of cross-contamination from potentially...
Consistent with its charge under Oregon House Bill 3543, the Oregon Climate Change Research Institute (OCCRI) conducts a biennial assessment of the state of climate change science, including biological, physical, and social science, as it relates to Oregon and the likely effects of climate change on Oregon. This fifth Oregon...
Connectivity of fish populations is a crucial question for fisheries conservation and the development of spatial management plans. Both adult and larval movement define the extent and direction of ecological and evolutionary overlap between geographic regions and, therefore, how we define stocks for management purposes. Within that context, my work...
Within the Pacific Northwest, USA, root diseases of conifers are a major forest health concern. These diseases are primarily caused by basidiomycete fungi. These fungal associates play a vital role in carbon sequestration but also have a significant negative economic impact within the timber industry. As a result, research on...
Ambiguity is a typical element of treaty documents. Its success in accommodating divergent interests, creating boundary conditions leading to dispute prevention and facilitating the conclusion of agreements has been widely recognized, yet less is known whether or not intentional ambiguity or unintentional ambiguity, or perhaps both, lead to challenges or...
RNAs play important roles in multiple cellular processes, and many of their functions rely on folding to specific structures. To maintain their functions, secondary structures of RNA homologs are conserved across evolution. These conserved structures provide critical targets for diagnostics and therapeutics. Thus, there is a need for developing fast...
Simultaneous speech translation (SimulST) is widely useful in many cross-lingual communication scenarios, including multinational conferences and international traveling. Since text-based simultaneous machine translation (SimulMT) has achieved great success in recent years. The conventional cascaded approach for SimulST uses a pipeline of streaming ASR followed by simultaneous MT but suffers from...
Secure two-party computation (2PC) is the task of performing arbitrary calculations on secret inputs provided by two parties, while maintaining secrecy if at least one party is honest. 2PC has been applied to privacy-preserving record linkage and machine learning, in areas such as medicine where maintaining privacy is crucial. One...
The focus of this thesis is to design, characterize, and apply novel computational methods and molecular systems to interrogate heterogeneous human gut microbiome-related phenomena. In Chapter 2, I design, implement, and characterize a method for embedding co-occurrence patterns derived from massive 16s amplicon datasets. I use this method to 1....
Vital rates and population connectivity are fundamental concepts in animal ecology and such information is critical for successful conservation planning. The Black-backed Woodpecker (Picoides arcticus) is a species of conservation concern because of its strong association with forests recently burned by high-severity wildfire. However, several recent studies have found that...
Cell signaling is often mediated by protein-protein interactions, which must be specific, tunable, and transient to allow agile responsiveness to cellular messages. Due to their unique properties, multivalent, intrinsically disordered proteins make ideal candidates to accomplish these vital tasks. A single protein with multiple binding sites may bind numerous partners,...
Severe wildfires are increasing in the western United States, impacting vegetation structure, and in turn, forest regeneration conditions. These wildfires are also raising a substantial amount of scientific and management concern regarding the resilience of forested ecosystems, or the ability of the ecosystem to return to a pre-fire condition. This...
Back pain is the leading cause of disability worldwide, entailing a significant socioeconomic impact. A primary source of back pain can be attributed to intervertebral disc (IVD) degeneration allowing nerve ingrowth, facet joint arthritis, disc bulging, and osteophyte formations that press on nearby nerve roots or the spinal cord. While...
The ongoing “method war” in literary criticism that has manifested as the impasse between Critique and Postcritique, which are identified respectively with paranoid and reparative modes of reading, raises existential questions about criticism in the face of its declining social value under neoliberalism. This thesis enters that impasse to suggest...
Recognized as a site of risk, innovation, and inspiration, failure is a growing area of multidisciplinary inquiry. My thesis draws attention specifically to the way composition studies approaches failure in order to ask: how can we implement failure pedagogies safely, and how do rhetorics of failure move toward social justice...
The purpose of this paper was to discuss the theory of erotic capital proposed by Catherine Hakim and how this theory affects online advertising done by sex workers. Through analyzing 29 different pages relating to the commercial sex industry, I observed how sexual capital is utilized in marketing strategies and...
Pesticides benefit agriculture by increasing crop yield, quality, and security. However, pesticides may inadvertently harm bees, which are valuable as pollinators. Thus, candidate pesticides in development pipelines must be assessed for toxicity to bees.
Leveraging a data set of 382 molecules with toxicity labels from honey bee exposure experiments, we...
Fires that affect buildings can have disastrous impacts, including significant losses to people, property, and the environment. Understanding how fires can impact structures provides the foundation to prevent structural collapse in fire. It is critical that the effect of fire is studied to protect the safety and welfare of civilians....
This study examines healthcare policy preferences of Oregon State University students through the lens of Political Culture Theory, as pioneered by Mary Douglas and Aaron Wildavsky in the 1980’s. The primary goal of this study is to examine the impact of cultural traits as described by Political Culture Theory on...
Bee populations are declining around the globe, while the need for their pollination services is increasing with growing food demands by an expanding population. There is a need for innovative practices to increase pollination in agricultural environments without harming wild bee populations. However, the use of artificial visual attractants has...
Through comparison and analysis of selected holidays in countries with significantly different features (Kyrgyzstan, Russia, and the United States), this study aims to gauge the impact of holiday celebrations in influencing cultural values in those countries studied. K. Zygulski’s classification system for holidays was applied to divide the holidays of...
Assessing AI systems is difficult. Humans rely on AI systems in increasing ways, both visible and invisible, meaning a variety of stakeholders need a variety of assessment tools (e.g., a professional auditor, a developer, and an end user all have different needs). We posit that it is possible to provide...
There is a critical need to understand the impact rural community health coalitions can have on their communities when there is a willingness and drive from community members to share resources and provide supports. This oral history will provide the Live Longer Lebanon Community Health Coalition with a document that...
Contaminants are ubiquitous in the environment, often reaching aquatic systems. Combinations of forestry use pesticides have been detected in both water and aquatic organism tissue samples in coastal systems. Yet, most toxicological studies focus on the effects of these pesticides individually, at high doses, and over acute time periods, which,...
Dysferlin is a ∼230 kDa terminally anchored membrane protein that is ubiquitously expressed, but is particularly enriched in skeletal and cardiac muscle tissue. Mutations covering the length of the protein have been linked to muscle wasting diseases including limb-girdle muscular dystrophy and Myoshi myopathy. Dysferlin has been shown to play...
This thesis seeks to determine whether a self-driving car's behavior should depend on the hearing status of its passengers: namely, hard-of-hearing (including deaf) or hearing. It is believed that auditory deprivation provokes adaptations in visual attention. These adaptations may lead to atypical movement patterns that can translate to different driving...
Variations in ocean conditions influenced by climate fluctuations may impact fish populations by changing their spatial distribution, physiology, survival, and other ecological features. Somatic growth is a crucial aspect of the biology of fishes and an important contributor to biomass fluctuations. Climate variability also affects somatic growth rates along the...
Organic semiconductors have attracted considerable attention due to their applications in low-cost, solution-processable (opto)electronic devices. An important class of high-performance organic semiconductors is pentacene derivatives, which exhibit high charger carrier mobilities in field-effect transistors and ultrafast singlet fission in photovoltaic devices. These derivatives have served as benchmark materials for systematic...
Animals aggregate and interact in nonuniform and nonrandom patterns, which lead to group level characteristics that have important evolutionary and ecological consequences. Network analysis provides a useful conceptual framework for linking animal interactions at all scales from dyads to communities, to populations and ecosystems. Despite exciting theoretical and applied advances...
The goal of this thesis is to ease the adoption of energy-efficient (EE) building strategies for affordable homes in the United States (US). Low-wage earning households spend nearly three times the proportion of their gross annual income on home energy bills resulting in higher energy burden for them when compared...
This study explores how multispecies social networks influence small farmers' perceptions of and responses to climate change across Oregon. Local food sovereignty and food system resilience depend on a robust local food system in which small farms play a critical role. To maintain their viability, small farmers must adapt to...
The coastal region is home to many types of surface fronts that exist on a submesoscale (1-10 $km$). While in situ observations capture point or transect observations of frontal behavior subsurface, their complex spatial patterns can be well-captured using remote sensing techniques, which provide synoptic views of the ocean surface...
Given the many significant roles that bacteria play in modern food manufacturing, it is crucial that we have a fundamental understanding of how bacterial communities assemble and behave in the food manufacturing environment. The focus of this dissertation was to investigate both the spatial and temporal distributions of microbial communities...
Data centers (DCs) have been witnessing unprecedented growth in size, number and complexity in recent years. They consist of tens of thousands of servers interconnected by fast network switches, hosting and enabling numerous applications with various traffic characteristics and requirements. As a result, DC networks have been presented with several...
Pseudomonas syringae are plant pathogenic bacteria that cause disease by rapidly multiplying within the aboveground tissues of host plants. Growth of P. syringae within plant host tissues requires the disarmament of host immune defenses that limit microbial growth. To combat host defenses, P. syringae deploys a type III secretion system...
This thesis follows two studies performed with simple robots. The first follows a robot interacting with eight improvisers to create scenes and perform five isolated gestures (towards, away, sideways, spin, and circle) for interpretation. The second follows a group of three robots performing the same five isolated gestures at two...
This work investigates a methodology for estimating the ocean stratification gradient based on high-resolution, in space and time, remote sensing observations of internal wave propagation speeds. The internal wave speed observations were collected using a shore-based, X-band marine radar and the ocean vertical density profiles were collected simultaneously from an...
How the direct and indirect effects of species interactions cascade to affect community structure, functioning, and stability is a fundamental question in ecology. In temperate kelp forests, species interactions, in conjunction with environmental processes, produce rich spatiotemporal dynamics.
Arguably the most dramatic of these are abrupt shifts in community state,...
Listeria monocytogenes is a foodborne pathogen frequently associated with food processing environments. Its presence is particularly concerning in facilities handling minimally processed and ready-to-eat foods. Recent outbreaks associated with fresh produce, such as packaged salads and mushrooms, highlight the need to better understand and control these pathogens in environments that...
Coral reef ecosystems continue to be significantly altered by disease epizootics, but why some host populations remain resistant while others succumb to outbreaks remains unknown. Research across diverse animal and plant host systems has revealed that disease severity is strongly influenced by host genetics and by environmental influences on both...
In this dissertation, a novel method for analyzing computed transition states (TS) for organic reactions is disclosed. It introduces the use of localization-delocalization matrices as parameters in a linear free energy relationship to determine the transition state interactions responsible for differences in energy between the major and minor TS in...
Deep learning is becoming the latest trend in sensitive applications, such as healthcare, criminal justice, and finance. As these new applications emerge, adversaries are circumventing them.
Further, there have been concerns about the possibility of bias and discrimination in predictive applications.
In order to address these issues, we propose an...