The National Park Service has a dual mission of providing public access to exceptional natural resources, but in a manner such that these resources are left “unimpaired for the enjoyment of future generations.” Human activities in parks undoubtedly affect wildlife, but the degree to which such activities cause impairment is...
Steven Universe, a relatively new show from Cartoon Network, explores an unexpectedly complex understanding of gender through their main protagonists. Utilizing Judith Butler’s work on gender performativity and doing gender, as well as Daniel Dennett’s conception of the self as a theorist’s fiction, and Alexander Weheliye’s understanding of power and...
Obesity is a complex multifactorial disease resulting from excessive energy intake compared to energy expenditure. The excess energy is mostly stored as fat in enlarged adipocytes, but some lipids may infiltrate other organs such as the liver to form ectopic fat. Adipose tissue and ectopic fat produce and secrete a...
The present day vegetation pattern of the Willamette Valley is a result of a long past of human alteration of the landscape. Beginning with aboriginal burning of the grasslands to present day land uses, the vegetation of the valley has been affected by anthropogenic activity. Wet prairie is a vanishing...
As part of investigations to adapt a suitable grazing system in
western Oregon, this research was designed to monitor the effects of
defoliation treatments on dry matter production, forage quality,
regrowth after defoliation, and species composition of a Lolium
perenne Trifolium subterraneum pasture for three consecutive
growing seasons from 1980...
Perennial ryegrass (Lolium perenne) - white clover
(Trifolium repens) hill-land pastures were grazed at
different times in the winter to study the effect of time
of winter grazing on plant response and forage production.
The same pastures were grazed by sheep once in early
December, January, February, March, or April...
Two tributaries of the south fork of the Burnt River, near Unity Oregon were studied
during the summers of 2000 and 2001 to determine water heating and cooling
patterns. Hourly temperature data were recorded for air, water, and soil parameters
at four elevations 150m apart on Barney and Stevens Creeks....
Silvicultural canopy gaps are emerging as an alternative management tool to accelerate development of complex forest structure in young, even-aged forests of the Pacific Northwest. I investigated patterns of nitrogen (N) availability along transects through 0.1 and 0.4 ha silvicultural gaps in three 50-70 year old Douglas-fir forests of western...
Pacific razor clams (Siliqua patula) are narrow oblong bivalves that can be found in sandy habitats along the western coast of the United States, from Alaska (Aleutian Islands) to southern California (Pismo Beach). In Washington state, the razor clam fishery has been documented to be an important contributor to the...
A model of the Oregon State TRIGA reactor was developed in Serpent 2 by translating a previously accepted MCNP model. Both models were verified and validated via comparison of each model and data gathered from the core start-up. Reactivity bias in each code was determined. Using the rod drop method,...
This dataset supports a research project and paper where we define criteria for assessing the effectiveness of data sharing, under the assumption that the goal of data sharing is to make the data usable, with minimal effort, to the new user. We take the position that the bar should be...
This dataset supports a research project and paper where we define criteria for assessing the effectiveness of data sharing, under the assumption that the goal of data sharing is to make the data usable, with minimal effort, to the new user. We take the position that the bar should be...
This dataset supports a research project and paper where we define criteria for assessing the effectiveness of data sharing, under the assumption that the goal of data sharing is to make the data usable, with minimal effort, to the new user. We take the position that the bar should be...
This dataset supports a research project and paper where we define criteria for assessing the effectiveness of data sharing, under the assumption that the goal of data sharing is to make the data usable, with minimal effort, to the new user. We take the position that the bar should be...
This dataset supports a research project and paper where we define criteria for assessing the effectiveness of data sharing, under the assumption that the goal of data sharing is to make the data usable, with minimal effort, to the new user. We take the position that the bar should be...
This dataset supports a research project and paper where we define criteria for assessing the effectiveness of data sharing, under the assumption that the goal of data sharing is to make the data usable, with minimal effort, to the new user. We take the position that the bar should be...
This dataset supports a research project and paper where we define criteria for assessing the effectiveness of data sharing, under the assumption that the goal of data sharing is to make the data usable, with minimal effort, to the new user. We take the position that the bar should be...
This dataset supports a research project and paper where we define criteria for assessing the effectiveness of data sharing, under the assumption that the goal of data sharing is to make the data usable, with minimal effort, to the new user. We take the position that the bar should be...
This dataset supports a research project and paper where we define criteria for assessing the effectiveness of data sharing, under the assumption that the goal of data sharing is to make the data usable, with minimal effort, to the new user. We take the position that the bar should be...
The level of polymorphisms of many biochemical and DNA markers are low in
cultivated sunflower (Helianthus annuus L.). The number of mapped public DNA
markers is limited. Molecular markers have not been developed for the most
important diseases of sunflower, such as downy mildew. The objectives of this
study were...
The cultivated sunflower (Helianthus annuus L., x=17) is one of the most important annual oilseed crops in the world. There are very few publicly shared sequence-based DNA markers and genetic maps in sunflower, even though molecular DNA markers and genetic maps have become widely used in all areas of genetic...
Two labelled arginines, DL-[2,3,3,-²H₃]arginine, 8,
and DL-[ ¹³C, 2-¹⁵N]arginine, 9, were synthesized. These
were fed to cultures of Streptomyces griseochromogenes in
order to probe the mechanism of the apparent arginine-2,3-
aminomutase reaction occurring in biosynthesis of blasticidin
S, 1. In previous studies of the enzymes lysine-2,3-
aminomutase and tyrosine-2,3-aminomutase different...
Transformation is a major bottleneck for genetic engineering and gene editing in forest tree species. This includes most genotypes of Populus and Eucalyptus, which are some of the world’s most widely-cultivated genera of plantation forest trees. To provide new tools for transformation, I tested the transcription factor-protein chimera consisting of...
Understanding how N availability influences base cation stores is critical for long-term ecosystem sustainability. Indices of nitrogen (N) availability and the distribution of nutrients in plant biomass, soil, and soil water were examined across ten young, unpolluted Douglas-fir (Pseudotsuga menziesii) stands in the Oregon Coast Range spanning a three-fold soil...
:
__________________________________________________________________
Steven S. Perakis
Understanding how N availability influences base cation stores is
Breast cancer is the most common cancer among women as it accounts for about 25% of all female cancer cases. Studies have shown that early detection of breast cancer increases the chances of a positive prognosis amongst patients therefore it is crucial to provide accurate diagnosis tools in routine exams....
Breast cancer is the leading cancer in women with an estimated 13% of women in the United States developing a form of invasive breast cancer in her lifetime. The survival rate is estimated to be 85%, but the American Cancer Society estimates that early detection of breast cancer in the...
Making quality and winterhardiness in barley are "ultimate" phenotypes composed of
component, quantitatively inherited traits. A 69-point genome map of the seven chromosomes of
barley was used, in conjunction with multi-environment phenotypes for grain yield and malting
quality, to determine the chromosome locations of quantitative trait loci (QTLs). A combined...
Fire-history reconstructions are based on tree-ring records that span the last few centuries and charcoal data
from lake-sediment cores that extend back several thousand years. The two approaches have unique strengths and
weaknesses in their ability to depict past fire events and fire regimes, and most comparisons of these datasets...
Studies were initiated to determine the response of two common
groundsel biotypes (Senecio vulgaris L. ) to several s-triazine herbicides.
Herbicides tested were: 2-chloro-4,6-bis(ethylamino)-striazine
(simazine), 2-chloro-4-(ethylamino)-6-(isopropylamino)-
s-triazine (atrazine) 2-(sec-butylamino)-4-(ethylamino)-6-methoxys-
triazine (GS-14254), 2, 4-bis(isopropylamino)-6-methoxy-striazine
(prometone), 2-(tert-butylamino)-4-(ethylamino)-6-methylthio-
s-triazine (terbutryn), and 2, 4-bis(isopropylamino)-6-
methylthio-s-triazine (prometryne). One biotype was much more
susceptible than the...
The objective of this study was to evaluate triticale
grain fed as a concentrate in the diet of high producing
dairy cows. A lactation study, in vitro dry matter
digestibilities and a preliminary physiological effects
trial were conducted to evaluate triticale and used to
make feeding recommendations.
In the lactation...
This study was conducted to determine the effects of
shipping stress on the immune system in domestic lambs (Ovis
aries) and to determine the potential of the thymic peptide,
thymulin, to reduce those effects of stress on the immune
system. Treatments consisted of no shipping (as unstressed
controls), shipping (as...
Growth hormone binding protein (GHBP) may be an important
factor in the regulation of growth as well as an indirect,
less invasive way of predicting the status of growth hormone
receptors. Several factors (age, nutritional status, sex,
and glucocorticoid administration) have been reported to
influence circulating growth hormone (GH) levels,...
These studies were conducted to examine the
influence of several variables on the growth hormone binding
protein (GHBP) in serum of pigs. Continuous long term
porcine somatotropin (pST) injections (daily for 6-7 wk)
increased GHBP activity (p < .05). However, periodic short
term pST injections (daily, every second d or...
This work entails both imaging and therapeutic applications of biomedical optics. In both contexts, an understanding of light transport in tissues is necessary. An overview of optical transport in tissues is given, including scattering theory. Digital Fourier holographic microscopy is introduced and applied as a means of metrology via optical...
This research addresses sample process variance estimation on continuous domains and for non-probability samples in particular. The motivation for the research is a scenario in which a program has collected non-probability samples for which there is interest in characterizing how much an extrapolation to the domain would vary given similarly...
Characterization of canopy structure, the horizontal and vertical distribution of the tree crowns in a forest, is important for the management of forests in the Pacific Northwest. The canopy is an important habitat element for many wildlife species, canopy structure affects understory development, and influences various natural processes, such as...
L. C. Dunn (1893-1974) spent most of his scientific career conducting research in
developmental genetics as a member of the Zoology Department at Columbia
University in the City of New York. He had an accomplished scientific career
researching mutations in mice, which earned him respect from other geneticists and
scientists....
Sharing of research data has begun to gain traction in many areas of the sciences in the past few years because of changing expectations from the scientific community, funding agencies, and academic journals. National Science Foundation (NSF) requirements for a data management plan (DMP) went into effect in 2011, with...
Locating archaeological sites that predate the arrival of modern sea level has been difficult along the Oregon coast. This is in part believed to be the result of geologic processes that have influenced the preservation, distribution, and visibility of sites within the Oregon coastal landscape. Because of these changes, researchers...
Montane meadows in the western Cascades of Oregon occupy approximately 5% of the landscape, but contribute greatly to the region's biodiversity. Western Cascades meadows are dynamic parts of the landscape and have contracted by over 50% in the past two hundred years in the HJ Andrews Experimental Forest (hereafter Andrews...
Ten helminth-free sheep were given two doses of 10,000,
X-irradiated, H. contortus, third stage larvae 30 days apart. These
animals and a group of ten non-vaccinated sheep were challenged
with 50,000, normal, H. contortus, third stage larvae 60 days
following the second vaccination. Antibody levels were measured
in both groups...
Eight species of Lathvrus (Fabaceae, Faboideae) endemic to the
Pacific Coast of North America were the subject of a systematic
investigation. Taxa studied included Lathvrus vestitus, Nutt. ex T.
& G., L. laetif lorus Greene, L.. iepsonii Greene, £,. splendens
Kellogg, L. polvphvllus, Nutt. ex T. & G., L. holochlorus...
Take-all root rot (Gaeumannomvces araminis var.tritici) is
a major disease of wheat (Triticum aestivum) in western Oregon.
Control of take-all is dependent on management practices such as crop
rotation and soil fertility-plant nutrition relationships. The
objective of this study was to develop a bioassay that could measure
the influences of...
Because of the potential elevated-temperature applications
of high-purity vanadium in nuclear reactors an
investigation was conducted to determine the effects of
nuclear irradiation upon the properties of the pure metal.
The results of this investigation indicated that the effects
caused by irradiation, increased strength and hardness and
decreased ductility, could...
Research Questions:
1) What are the characteristics of storm location and
frequency that distinguish interannual forcing events, (ENSO
periods) for the northwest Pacific Coast?
2) Are there differences in the spatial and temporal
characteristics of storm events, (location and frequency),
between interannual forcing periods and annual average
periods?
3) Are...
This paper examines the response of submerged model sand
slopes to vibration and the beneficial effects of placing rock revetments
on the face of the slope to prevent flaw slides.
Pore water pressure response and deflection were used as a
criteria for stability in an attempt to relate stability with...
In an effort to fill an existing need two small electric service
vehicles were designed, constructed, and tested. The first
acted as a feasibility study and the second as a design prototype.
The vehicles had low cost and the capability of being fabricated by
their users as two main design...
Adaptive sampling designs are those in which
observations made during a survey may be taken into
account when selecting the sites for further observations.
Increases in survey precision may be achieved through
adaptive procedures. The most efficient designs
incorporate flexible sample size along with sequential
selection of sites. In surveys...
Oregon's Special Farm Use Assessment program is investigated
in this paper for its effectiveness in preserving farmland from urban
sprawl. Basic research for this study was conducted in Jefferson
County, a rural central Oregon county. Data from a similar study conducted
in Washington County, an urbanizing northern Willamette Valley
county,...
The thesis begins with an introduction to signal transduction
and an analysis of current understanding of plant signal
transduction. There are similarities between plants and animals,
but also key differences, including lack of protein kinase C and of a
cAMP signaling pathway in plants, and presence in plants of
calcium...
The influence of protein adjuncts and variations in pH on the
cook-cool loss, moisture content, and texture of squid gels was
investigated. Break force (P [greater than or equal to] .025), deformation to break (P [greater than or equal to] .01)
and cook-cool loss (P [greater than or equal to]...
Managed care plans purport to improve the health of their members with chronic diseases. How has the growing adoption of Medicare Advantage (MA), the managed care program for Medicare beneficiaries, affected the progression of chronic disease? The literature is rich with articles focusing on managed care organizations' impacts on quality...
Vaccination with Vibrio anguillarum by oral administration
during copper exposure and intraperitoneal injection prior to copper
exposure was employed to investigate the effects of copper upon survival
and the immune response of juvenile coho salmon (Oncorhynchus
kisutch). Following copper exposure the survivors were challenged
under natural conditions to V. anguillarum,...
The City of Newport, in Lincoln County, is undergoing change in response to shifts in
demographics and the economic base. Following a 1990 report, a comparative growth study of the region
was initiated to observe the effectiveness of Oregon's mandatory urban growth boundaries. Data was
collected for land use permits...
The Steamboat Creek basin drains 227 mi² (588 km²) of steep forested terrain into the North Umpqua River of Southwest Oregon, 39
mi (63 km) northeast of Roseburg. Summer base flows for Steamboat Creek average 83 cfs (2.35 m³/sec). Steamboat Creek and its
tributaries are considered important to the production...
The protection of water quality and the maintenance of productive
anadromous fisheries is a primary concern in the Pacific Northwest.
Excessive suspended sediment loads is a principle water
quality problem on small wildland watersheds in this region (Anderson,
1971; Brown, 1972). Man's activities have been shown to increase
sedimentation rates...
Understory species associations and their association with tree species were examined on three intensively studied stands. We studied the chronosequence of understory species associated with different aged singleleaf pinyon (Pinus monophylla Torr. and Frem.) trees. Mid- to late pinyon-juniper understory succession was found to be more spatial than floristic in...
A massive reduction in historic populations of Olympia oysters (Ostrea lurida), the only native oyster found on the west coast of North America, has contributed to a loss of ecosystem and cultural services once provided by this species. Resource management agencies and environmental organizations are working to protect and enhance...
The neutron flux-energy spectral characterization of a Thermo Fisher MP320 deuterium-tritium neutron generator was performed for two shielding configurations, one with substantial moderator between the source and the sample and one without such moderator. The STAYSL PNNL spectral adjustment code was utilized in conjunction with MCNP modelled reference spectra and...
Early studies on the biosynthesis of Sarubicin A, 1, had suggested the
intermediacy of the novel aromatic amino acid 6-hydroxyanthranilic acid,
17. To investigate the biosynthetic steps beyond 17, [¹³C-¹⁵N carboxamide]
6-hydroxyanthranilamide, 27a, was synthesized, and fed to fermentations
of Streptomyces helicus. Incorporation of 27a into 1 provided suggestive
evidence...
The competition or rivalry for the use of water resources
among economic sectors of the Pacific Northwest and among geographical
regions of the western United States has intensified in recent
years. This rivalry and the long run prospects for water shortages
have increased the demand for research concerning the productivity...
The competition or rivalry for the use of water resources
among economic sectors of the Pacific Northwest and among geographical
regions of the western United States has intensified in recent
years. This rivalry and the long run prospects for water shortages
have increased the demand for research concerning the productivity...
This thesis examines the application of findings from the social psychological field of
procedural justice to public involvement in natural resource decision making. The
methodological approach involves examining the literature of each of the fields and
developing a synthesis applicable to public involvement. The review of public involvement
literature reveals...
Ecosystem nitrogen (N) supply strongly influences the availability and cycling of other essential nutrients in temperate forests, especially calcium (Ca). Short-term additions of N that exceed ecosystem demands often increase dissolved nitrate fluxes and decrease soil pH, which can stimulate soil Ca loss. However, the long-term effects of high N...
The oilseed crop Limnanthes alba (white meadowfoam) is grown in Oregon. Methods were developed for the production of a liquid-based bioherbicide from meadowfoam seed meal (MSM). It was determined that glucosinolate-containing extracts of MSM can be combined with active-enzyme-containing liquid extracts of meadowfoam seed to form a fermented product rich...
Five experiments were conducted with commercial broilers to study the effects of feeding yellow pea (Pisum sativum L. var. Miranda) diets with and without supplementation. Mean body weights and feed conversion for broilers fed 0, 25, 50 and 65% of soybean crude protein (CP) substituted with yellow pea (YP) protein...
This dissertation is comprised of four studies on different elements of Populus biotechnology and genomic science: 1) growth improvement by recombinant DNA (rDNA) modification of gibberellin (GA) metabolism; 2) gene editing using zinc-finger nucleases (ZFNs); 3) induction of floral sterility by RNA interference (RNAi) of AGAMOUS (AG) gene homologs; and...
Habitat restoration projects are vital for recovering ecosystems, but they can be expensive. One way to help justify the price tag is to value the economic benefits provided by the restored habitat. The issue is that many ecosystem services and the flow of benefits they produce are complex, requiring careful...
A time dependent model of the shallow, tropical convective boundary layer is
developed and tested. To simplify the treatment of thermodynamic processes and
return to first principles of physics, conserved quantities of entropy and total
water density are used as primary model variables. In addition, a new shallow
cumulus parameterization...
Society uses massive quantities of wood fiber in production of paper, and demand for fiber is projected to increase further as production of biofuels from fermentation of plant cellulosic materials increases. Because these end uses generally require the costly step of removing of lignin, wood with reduced or more easily...
The Oregon State University (OSU) Radiation Center (RC) is the location of a one
quarter scale model of the Westinghouse Electric Corporation advanced light-water
nuclear reactor design called the AP-600. The full scale AP-600 is a 600 megawatt electric
nuclear power plant that incorporates unique passive systems to perform the...
The problem of estimating the parameters of a forced discrete
linear dynamic model is considered. The system model is conceptualized
to include the value of the initial state as a parameter. The forces
driving the system are partitioned into accessible and inaccessible
inputs. Accessible inputs are those that are measured;...
For the past 100 years, the prominent instructional model for all public
education in the United States has been teacher/content centered with the intent of
covering a discrete body of knowledge in a given period of time. As the end of the
twentieth century approaches, natural, social, political, and economic...
The Arabidopsis thaliana developmental promoters of WUSCHEL (WUS) and COLD SHOCK DOMAIN PROTEIN 3 (CSP3) were tested for their suitability as potential control elements for the Cre-Lox recombination system in poplar cells. To remove the integrated transgene after CRISPR machinery has modified the genome, timely control of Cre is required....
Shell-boring polychaetes pose economic risks for oyster aquaculture industries as they reduce the aesthetic quality of oyster products by creating unsightly mud-filled blisters on the inside of the shell. Recently there has been a reported uptick in infested oysters on commercial farms along the west coast of the US, which...
Ascorbic acid, or vitamin C, is well known as a co-factor for proline-hydroxylase and as an anti-oxidant. However, it is also capable of forming covalent bonds, particularly in the role of a nucleophile, henceforth termed 'ascorbylation'.
The ascorbylation of electrophiles can occur under physiological conditions. Furthermore, there are a number...
The Neutron radiography facility (NRF) at Oregon State University (OSU) has been modified to begin working on the non-destructive evaluation of concrete materials to study the early stages of shrinkage, cracking, and water transport of concrete during the curing process.
The objective of this work is to investigate the efficiency...
Epigenetic mechanisms are important for control of plant development, and may play a particularly important role in trees given their long life cycles and distinctive and stable tissue types. To help understand the role of epigenetics in tree development, we produced transgenic poplars with reduced activity of the DDM1 genes,...
The objective of this work was to determine and optimize the resolution of a neutron sensitive Multi-Channel Plate (MCP) detector in order to determine its capabilities in radiography and tomography. The Oregon State University, Neutron Radiography Facility added an MCP Detector in 2012 in order to analyze these capabilities. The...
Calcium (Ca) is an essential macronutrient that is increasingly recognized as a biogeochemical factor that influences ecosystem structure and function. Progress in understanding the sustainability of ecosystem Ca supply has been hampered by a lack of information on the various forms and pools of Ca in forest ecosystems. In particular,...
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Steven S. Perakis
Calcium (Ca) is an essential macronutrient that is increasingly
In this dissertation, I examine emerging economic issues which intersect outdoor recreation, environmental quality, public land use, and public health advisories. First, I explore the potential impacts of social media on visitation to public land. Social media, and in particular Instagram, has been suggested by journalist and land managers as...
The debate over GM crops is one of the most controversial issues of recent decades. The debate has many dimensions, including environmental impacts, benefits and risks to human health, intellectual property rights, adequacy of biosafety regulations, and fundamental ethical acceptability. The potential benefits of GM crops are numerous, including improved...
Music is a global tradition. Different cultures around the word have different musical traditions and histories, but all people create music for the same reason: the love of music and expressing oneself. In the spring of 2011, the Oregon State University Music Department entered into a cultural exchange program with...
This thesis evaluates dose rates from the TRIGA® reactor by comparing ion chamber measured exposure rates to exposure rates calculated from MCNP5 model data. The first step evaluates the energy distribution required to match ion chamber exposure rates from measurements taken at 1 foot increments above the reactor core. Next,...