The continued scaling of deep-submicron CMOS technology enables low-voltage high-frequency phase-locked loops (PLLs) to be fully integrated in complex mixed-signal systems. However, fluctuations due to the manufacturing process and variations in
environmental conditions, such as supply voltage and temperature, are also significantly increased. As a result, the performance of PLLs...
Metabolic syndrome is a problem affecting people around the world. In a number of studies, soy intake has been documented to possess antidiabetic and anticardiovascular effect. My project is focused on the impact of the intake of compounds found within soy, the isoflavones, their impact on metabolic syndrome symptoms, and...
Diatoms are single celled eukaryotic microalgae that self-assemble complex SiO₂
nanostructures by sillafin proteins within their cell wall. There has been increasing
interest in mimicking the diatom’s silica self-assembly process for fabricating metal
oxide nanoparticles, namely germanium dioxide (GeO₂). GeO₂ has a higher refractive
index than silica, enabling it to...
A single item is to be produced over a given number of time
periods to satisfy the future requirements which are subject to fluctuations.
The production rate and work force level for each time
period are to be decided in order to minimize the production cost
where the costs for...
Firms' participation in exporting or foreign direct investment is an extremely rare behavior: only 4 percent of over 5.5 million U.S. firms were exporters in 2000. Exporters are generally larger (e.g. output and employment) and more productive than firms serving only domestic markets. Such heterogeneity within a narrowly defined industry...
Correlated double sampling (CDS) circuits are essential to processing the X-ray charge-coupled devices (CCDs) that have been used in the modern X-ray astronomical field. For spectroscopy observations, the energy resolution is of decisive importance. In this paper, a comprehensive study of the CDS algorithm based on the incremental Delta Sigma...
BACKGROUND: Long non-coding RNAs (lncRNAs) are transcripts that are 200 bp or longer, do not encode proteins,
and potentially play important roles in eukaryotic gene regulation. However, the number, characteristics and
expression inheritance pattern of lncRNAs in maize are still largely unknown.
RESULTS: By exploiting available public EST databases, maize...
The standard model of supervised learning assumes that training and test data are drawn from the same underlying distribution. This paper explores an application in which a second, auxiliary, source of data is available drawn from a different distribution. This auxiliary data is more plentiful, but of significantly lower quality,...
The performance of deep learning frameworks could be significantly improved through considering the particular underlying structures for each dataset. In this thesis, I summarize our three work about boosting the performance of deep learning models through leveraging structures of the data. In the first work, we theoretically justify that, for...
Characterization of uranium isotope compositions is of great interest in many nuclear sub-areas for safeguards purposes. Reprocessing facilities utilizing pyroprocessing raised an issue of uranium isotope monitoring due to the difficulty to apply traditional approaches under extreme environments. An rapid and remote method to characterize uranium isotope compositions for such...
The Department of Nuclear Engineering and Radiation Health Physics (NE/RHP) at Oregon State University (OSU) has been developing an innovative modular reactor plant concept since being initiated with a Department of Energy (DoE) grant in 1999.
This concept, the Multi-Application Small Light Water Reactor (MASLWR), is an integral pressurized water...
In order to address the energy needs of developing countries and remote communities, Oregon State University has proposed the Multi-Application Small Light Water Reactor (MASLWR) design. In order to achieve five years of operation without refueling, use of 8% enriched fuel is necessary.
This dissertation is focused on core design...
Mud volcanoes (MVs) are considered as important methane (CH₄) sources for the
atmosphere; gas is not only released from macroseepage, i.e., from craters and visible gas bubbling
manifestations, but also from invisible and pervasive exhalation from the ground, named miniseepage.
CH₄ flux related to miniseepage was measured only in a...
Barley (Hordeum vulgare L.) possesses a large and highly repetitive genome of 5.1 Gb that has hindered the development of a complete sequence. In 2012, the International Barley Sequencing Consortium released a resource integrating whole-genome shotgun sequences with a physical and genetic framework. However, because only 6278 bacterial artificial chromosome...
This paper reviews the current progress in mathematical modeling of
anti-reflective subwavelength structures. Methods covered include effective medium
theory (EMT), finite-difference time-domain (FDTD), transfer matrix method (TMM), the
Fourier modal method (FMM)/rigorous coupled-wave analysis (RCWA) and the finite
element method (FEM). Time-based solutions to Maxwell’s equations, such as FDTD,
have...
A shell model for ferroelectric perovskites fitted to results of first-principles density functional theory (DFT) calculations is strongly affected by approximations made in the exchange-correlation functional within DFT, and in general not as accurate as a shell model derived from experimental data. We have developed an isotropic shell model for...
We report an ultra-compact, cost-effective on-chip near-infrared spectroscopy system for CO₂ sensing using narrow-band optical filter array based on plasmonic gratings with a waveguide layer. By varying the periodicity of the gratings, the transmission spectra of the filters can be continuously tuned to cover the 2.0 μm sensing window with high...
This study was to determine whether postharvest hydrogen sulfide (H2S) fumigation effected surface pitting development of 'Lapins' and 'Regina' cherries after cold storage, and if so, how it minimizes surface pitting injury and its relation to cell wall metabolism. Fruit were exposed to H2S gas released from an aqueous solution...
We demonstrate a surface enhanced Raman scattering (SERS) substrate by integrating plasmonic-active SiO₂ nanotubes into Si₃N₄ gratings. First, the dielectric grating that is working under guided mode resonance (GMR) provides enhanced electric field for localized surface plasmon polaritons on the surface of metallic nanoparticles. Second, we use SiO₂ nanotubes with...
In 2008, China launched the Green Securities Policy to increase sustainability practices among companies listed on Chinese stock markets. An integral component of the policy is the environmental disclosure regulation, which directs publicly traded Chinese companies in 14 highly polluting industries to report required environmental information. This research explores the...
Wood shear walls are the main lateral force-resisting system for wood-frame construction. Water intrusion and subsequent decay around connections can significantly impact shear wall behavior, but these problems are seldom studied. In this study, effects of water intrusion and fungal attack on shear wall capacity were examined using small-scale (610-...
Wood I-joists are often left uncovered and exposed to the weather during construction, allowing the oriented strandboard and laminated veneer lumber in these systems to be adversely affected by water absorption. Manufacturers typically specify that these materials be protected from wetting, but this can be difficult in wetter climates. There...
Recently, Explicit Congestion Notification (ECN) has been leveraged by most Datacenter Network (DCN) protocols for congestion control to achieve high throughput and low latency. However, the majority of these approaches assume that each switch port has one queue while current industry trends towards having multiple queues per switch port. To...
The dissertation focuses on the engineering of light-matter interaction using plasmonic nanoparticles and metamaterials to achieve enhanced luminescence and based on which to improve the performance of biosensing and light-emitting technologies. We designed and fabricated a spectrum of nanostructures to exhibit particular dispersion relations capable of controlling the spontaneous emission...
In long distance transmission where it is impossible to transmit a direct current for electric rail roading and for many other applications on a very low voltage percent line loss, it is essential to transmit the power by means of an alternating current at high pressure and then reduce its...
Pesticides benefit agriculture by increasing crop yield, quality, and security. However, pesticides may inadvertently harm bees, which are valuable as pollinators. Thus, candidate pesticides in development pipelines must be assessed for toxicity to bees.
Leveraging a data set of 382 molecules with toxicity labels from honey bee exposure experiments, we...
This paper reviews the current progress in mathematical modeling of
anti-reflective subwavelength structures. Methods covered include effective medium
theory (EMT), finite-difference time-domain (FDTD), transfer matrix method (TMM), the
Fourier modal method (FMM)/rigorous coupled-wave analysis (RCWA) and the finite
element method (FEM). Time-based solutions to Maxwell’s equations, such as FDTD,
have...
Ferromagnetic resonance (FMR) characterization, using a vector network analyzer (VNA), is widely used to determine anisotropy, g-factor, and Gilbert damping parameter of magnetic thin films, but results are typically reported without calculation of the measurement accuracy. We present a method of processing VNA-FMR measurements to determine both the value and...
A novel method of copper indium diselenide nanoparticle
(CuInSe₂ NP) synthesis using a two-step, continuous flow,
solar microreactor is reported here. This method allows for
exceedingly fast heating and short reaction times using only
radiative heat transfer from simulated, concentrated solar
radiation. Chalcopyrite and sphalerite CuInSe₂ phases have
both been...
The methods for conducting reductionist ecological science are well known and widely used. In contrast, those used in the synthesis of ecological science (i.e., synthesis science) are still being developed, vary widely, and often lack the rigor of reductionist approaches. This is unfortunate because the synthesis of ecological parts into...
Morpholino oligos (Morpholinos) are widely used tools for knocking down gene expression and are currently in a clinical trial for treatment of Duchene muscular dystrophy. A Morpholino analog has been in a clinical trial as a potential anti-bioterrorism agent for inhibiting replication of deadly Marburg viral infection. The cellular uptake...
Slowly and half-heartedly the people of America have come to atone for past neglect of a poet who, under painful circumstances, produced the most distinctive and original contributions to American literature. They realize that the follies of his unfortunate life can be put aside and the weight of criticisms let...
The influence of protein adjuncts and variations in pH on the
cook-cool loss, moisture content, and texture of squid gels was
investigated. Break force (P [greater than or equal to] .025), deformation to break (P [greater than or equal to] .01)
and cook-cool loss (P [greater than or equal to]...
Horticultural and nursery crops are the leading agricultural commodity in Oregon. Among currently grown nursery plants, Verbena x hybrida is a staple ornamental. It is grown and shipped worldwide, thus requiring a high level of certainty concerning the plants’ health and potential viability. V. x hybrida cultivars have been infected...
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conditions such as temperature and photoperiod (Tu, 1989, Merritt and Ting,
1995, Carpenter, 1963, Shukla et
Atherosclerosis is the underlying cause of ischemic heart disease and stroke and is the leading cause of death worldwide, especially in developed countries. As an inflammatory disease of arteries in a hyperlipidemic milieu, expression of adhesion molecules, such as endothelial-leukocyte adhesion molecule-1 (E-selectin) and intercellular adhesion molecule-1 (ICAM-1), on endothelial...
Top-performing approaches to embodied AI tasks like point-goal navigation often rely on training agents via reinforcement learning over tens of millions (or even billions) of experiential steps – learning neural agents that map directly from visual observations to actions. In this work, we question whether these extreme training durations are...
Improvement of manufacturing productivity is dependent on the successful
automation of manufacturing processes, the success of which is based in turn upon
the availability of information which describes the state of manufacturing operations.
Acoustic Emission (AE) signals related to the cutting process and tool wear have
been recently applied to...
Hepatitis E virus (HEV) infection is a cause of hepatitis in humans worldwide. Recently, persistent and chronic HEV infections have been recognized as a serious clinical problem, especially in immunocompromised individuals. To date, there are no FDA-approved HEV-specific antiviral drugs. In this study, we designed and evaluated antisense peptide-conjugated morpholino...
A study was conducted to evaluate the developmental toxicity of three commonly detected mycotoxins in food (deoxynivalenol, patulin, and zearalenone) using the zebrafish (Danio rerio) model. Mycotoxin exposures were carried out at five concentrations (0.0064, 0.064, 0.64, 6.4, and 64 μM). Morphological and photomotor screenings were conducted at 24 hours...
A novel table-top, microreactor-assisted nanomaterial deposition (MAND™) process, which combines the merits of microreaction technology with solution-phase nanomaterial synthesis and film deposition, was used to grow a nanostructured ZnO anti-reflective coating on a textured silicon substrate from aqueous solution. The subwavelength, anti-reflective nanostructures mimicked the structure and performance of the...
This study investigated the effects of visual cues, muscular fatigue, task performance and experience of working on inclined
surfaces on activity of postural muscles in the lower limbs associated with maintaining balance on three inclined surfaces –
08, 148 and 268. Normalised electromyographic (NEMG) data were collected in 44 professional...
Background: The identification of the loci and specific alleles underlying variation in quantitative traits is an important goal for evolutionary biologists and breeders. Despite major advancements in genomics technology, moving from QTL to causal alleles remains a major challenge in genetics research. Near-isogenic lines are the ideal raw material for...
In conventional cropping systems in the Willamette Valley, slow
establishing grass species, such as Kentucky bluegrass (Poapratensis L.) are planted in the spring and seed is not harvested
until the following year. Due to increasing annual production
costs, it is necessary to generate a cash return from each field
each...
Fe25Co25Ni25Cr25-XMoX High Entropy Alloys were fabricated in mini arc-melter and then cast into 4mm diameter cylinders by injection casting technique and 1cm diameter cylinders by water quenching technique. Heat transfer modeling during solidification of FeCoNiCr HEA was simulated. Combining X-Ray Diffraction, Optical Microscopy, Scanning Electron Microscope, Energy Dispersive X-ray analysis,...
We investigate, theoretically and experimentally, the problem of modeling depth-integrated (2DH) surf zone circulation on an alongshore-nonuniform natural beach, with waves approaching from an arbitrary angle. An approximate theoretical model is developed, which captures the important effect of advection in the alongshore dynamics, and shows that a nondimensional parameter Re[subscript]s...
Starch is a significant component of the human diet and the glucose produced through its digestion provides a critical source of energy. When starch enters the mouth, salivary α-amylase hydrolyzes it into maltooligosaccharides (MOS, degree of polymerization [DP] 3-20) and maltopolysaccharides (MPS, DP >20). Previous studies have found that humans...
We sought to characterize the distribution of juvenile walleye pollock Theragra chalcogramma in an area of intense predator-prey interactions and to describe habitat features that lead to their observed distributions. The distribution of juvenile walleye pollock around the Pribilof Islands in the southeastern Bering Sea in 2008 and 2009 was...
Developments in smart home technology and the Internet of Things have significantly increased the demand for high-speed indoor wireless links. Although the majority of the research conducted in this area is still focused on the efficient usage of radio frequency (RF) spectrum, free-space optical (FSO) networks have also been explored...
The amino acid acridon-2-ylalanine (Acd) can be a valuable probe of protein conformational change because it is a
long lifetime, visible wavelength fluorophore that is small enough to be incorporated during ribosomal biosynthesis. Incorporation
of Acd into proteins expressed in E. coli requires efficient chemical synthesis to produce large quantities...
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.; Haugland, R. P. Proc. Natl. Acad. Sci. U. S. A. 1967,
58, 719-726.
(5) Wu, P.; Brand, L. Anal. Biochem
Compared to conventional amorphous silicon (a-Si) TFTs, amorphous metal oxide TFTs have superior device performance such as
higher mobility, better sub-threshold swing, and lower off-state current. Amorphous metal oxide TFTs have an additional advantage
on the device uniformity due to the lack of grain boundary issues in the poly-Si TFTs....
Background: There is increasing epidemiologic evidence that arsenic exposure in utero, even at low levels found throughout much of the world, is associated with adverse reproductive outcomes and may contribute to long-term health effects. Animal models, in vitro studies, and human cancer data suggest that arsenic may induce epigenetic alterations,...
While water scarcity and energy demand are continuously increasing in the world, alternative sources are needed to meet the requirement of a growing population. Microbial Fuel Cell (MFC) is a sustainable technology that converts organic matter in wastewater into electricity, thus it can be a potential alternative source for water...
Back pain is the leading cause of disability worldwide, entailing a significant socioeconomic impact. A primary source of back pain can be attributed to intervertebral disc (IVD) degeneration allowing nerve ingrowth, facet joint arthritis, disc bulging, and osteophyte formations that press on nearby nerve roots or the spinal cord. While...
The various solution-based processes, spin coating, inkjet printing, microreactor assisted nanoparticle deposition (MANDTM) and spin-successive ionic layer absorption and reaction (Spin-SILAR) were used to demonstrate thin film electronics and anti-reflective coatings. Several aspects of thin film transistors (TFTs) were tested including a range of temperatures, annealing atmosphere, and deposition methods....
Mycobacterium avium subspecies hominissuis (M. avium) is a ubiquitous, acid-fast organism found in water and soil. This opportunistic pathogen is a common causative of pulmonary diseases in immunocompromised individuals and prevalent infection in HIV/AIDS patients. As a primary defense response against infection, immune cells such as macrophages phagocytize M. avium...
Dramatic increases in research in the area of microbial biofuel production coupled with
high-throughput data generation on bioenergy-related microbes has led to a deluge of
information in the scientific literature and in databases. Consolidating this information and
making it easily accessible requires a unified vocabulary. The Gene Ontology (GO) fulfills...
This thesis presents an interactive software tool for tracking a moving object in a video. In particular, we focus on the problem of tracking a player in American football videos. Object tracking is one of the fundamental problems in computer vision. It is one of the most important components in...
A local effect of endogenous ovarian hormones on the
in vitro responses of the bovine infundibulum to the
neurotransmitters norepinephrine (NE) and acetylcholine
(Ach) was investigated. Prostaglandin F₂α-tham salt was
utilized to induce luteal regression in six heifers
which were necropsied during proestrus. Six heifers were
also necropsied during the...
Using plant fibers as a potential renewable material to substitute for glass fibers in fiber-reinforced polymer composites has been growing since the late 1990s. Due to high demand, there has been a shift towards ‘green concept’ material in many applications. Numerous secondary plant fibers have been explored as a source...
To become a competitor for fossil fuels such as coal, solar installations will need to be produced and installed at a price equal to or below grid parity. This price can be approached by either reducing the overall system cost or increasing system efficiency. The focus of this paper is...
Wheat sharp eyespot (SES), caused by the soil-borne fungus Rhizoctonia cerealis is a common stem disease of wheat globally. The disease caused a severe and extensive epidemic throughout the Willamette Valley of Oregon in 2014 and has remained one of the most important wheat diseases in this region. However, litte...
Modern datacenters are constructed with multirooted tree topologies and support multiple service queues per switch port. They support a wide variety of applications and services with stringent performance needs and conflicting requirements. To meet these requirements, recent works focus on load balancing or ECN marking approaches. Though existing load-balancing approaches...
A general model of interactive problem solving is described. The model views interactive problem solving to be the product of cooperating subsystems. The operative subsystem selectively attends to and manipulates problem relevant information in search of a solution. The descriptive subsystem is capable of interpreting this behavior and of discussing...
M. avium is an opportunistic pathogen that primarily infects macrophages. In order to survive within the macrophage, M. avium secretes proteins into the host cell cytoplasm to inhibit specific functions such as phagosome acidification, altering pathways as well as initiating apoptosis. However, little is known about how those secreted proteins...
The spin-orbit states of both the ground and several
charge-transfer-excited electronic configurations of
gaseous MnX₂, CoX₂, NiX₂, and CuX₂ are derived. Only one-electron
transitions from the ground electronic state are
considered. The molecules are treated as linear in both
the ground and excited states. In each case, the spin-orbit
states...
Tests were conducted to determine the effect of ACZA composition on fixation and the roles of adsorption and precipitation in fixation. The sites of copper and zinc adsorption within the treated wood and the bonding environment of adsorbed copper were also examined. The results generally support the finding that arsenic...
Two different types of Phosphorodiamidate Morpholino Oligomers (PMOs) were used to
inhibit growth in pure cultures of Salmonella enterica serovar typhimurium and in mouse
macrophages infected with S. typhimurium. Both PMOs were 11 bases long and
complementary to bases 6-16 of acyl carrier protein mRNA. A membrane-penetrating
peptide, (RXR)4XB, was...
Circuits operating outside the earth’s atmosphere are more vulnerable to cosmic radiation and require special design consideration. The purpose of this work is to explore methods of mitigating the effect of radiation in phase locked loop (PLL) circuits. Several voltage controlled oscillators (VCOs) and two complete PLLs are designed and...
Epidemiological evidence has demonstrated a reduced risk of prostate cancer associated with cruciferous vegetable intake. Follow-up studies have attributed this protective activity to the metabolic products of glucosinolates, a class of secondary metabolites produced by crucifers. The metabolic products of glucoraphanin and glucobrassicin, sulforaphane and indole-3-carbinol respectively, have been the...
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):941-9.
(31) Saw CL, Cintron M, Wu TY, Guo Y, Huang Y, Jeong WS, et al. Pharmacodynamics of dietary
We model the evolution of eukaryotic protein-protein interaction (PPI) networks. In our model, PPI networks evolve by two known biological mechanisms: (1) Gene duplication, which is followed by rapid diversification of duplicate interactions. (2) Neofunctionalization, in which a mutation leads to a new interaction with some other protein. Since many...
To examine the macrophage response to M. avium, I compared inflammasome and cytosolic sensor expression and activation. My result demonstrated that virulent strains of M. avium (A5 and 104) suppress IL-1β production and induce IFN-β production in macrophages. M. avium mutants deficient at DNA export in the biofilm exhibited reduced...
The Energy Frontier Research Center (EFRC) for
Solid-State Lighting Science (SSLS) is one of 46 EFRCs initiated in
2009 to conduct basic and use-inspired research relevant to energy
technologies. The overarching theme of the SSLS EFRC is the
exploration of energy conversion in tailored photonic structures. In
this article we...
With an increasing number of wireless applications at microwave frequencies, the frequency spectrum is becoming quite crowded. Due to this congestion, the current state of technology is leading towards upper microwave and millimeter wave spectra as they also offer other distinct advantages such as larger bandwidth and smaller component footprint....
Mismatch repair (MMR) system performs mainly three roles to maintain
genomic stability, correct DNA biosynthetic errors, ensure the fidelity of
genetic recombination, and in mammalian cells participate in the cellular
response to some DNA damages. Deficiencies in mismatch repair increase
mutation rates and cancer risks. In eukaryotes, the MMR system...
Nanoparticles (NPs), defined as materials having at least one dimension (height, width, diameter) in the nanoscale, are increasingly being incorporated into a wide variety of products and are replacing traditional bulk materials in many applications. This is because they can be more efficacious, more sustainable, and can have unique characteristics...
ROP GTPases are crucial regulators of pollen tube growth. The Rop GTPase family in maize consists of nine known rop genes, ropl-rop9. A subset of these genes (rop2, rop8, and rop9) are expressed in pollen. The rop2 and rop9 genes are a highly conserved duplicate gene pair of ancient origin....
The overall goal of this study was to utilize apple pomace, the byproduct from juice processing, as a renewable source of fiber to create sustainable packaging using molded pulp technology. The goal was accomplished through two studies: 1) to modify apple pomace fibers for increasing relative cellulose composition and improving...
Ovarian steroidogenesis is heavily controlled by the formation and function of the theca cells. A condition known as polycystic ovarian disease in humans and cystic ovarian disease in cattle is due to abnormal steroidogenesis. Knowing more about theca cell formation and function can aid in gaining further knowledge about polycystic...
Smart growth strategies of infill and compact growth in existing suburban cities will most likely not be
sufficient to absorb a new US household growth in the future. To meet housing demands and preferences,
master-planned communities will continue to be built in outlying exurban areas. However, little is known
about...
The nature of the teleconnection linking ENSO variability with Atlantic basin tropical storm formation is investigated. Solutions of the linearized barotropic vorticity equation forced with August–October El Niño event divergence produce upper-tropospheric vorticity anomalies over the Sahel and at the mouth of the North African–Asian (NAA) jet over the tropical...
Learning to recognize objects is a fundamental and essential step in human perception and understanding of the world. Accordingly, research of object discovery across diverse modalities plays a pivotal role in the context of computer vision. This field not only contributes significantly to enhancing our understanding of visual information but...
Anomaly detection aims at detecting the points that appear different than the majority of the data, such that they are suspected to be generated from a different distribution. Anomaly detectors have been applied in many different fields, such as detecting fraudulent behaviors in bank transaction, finding broken sensors in a...