Interface habitats are considered valuable natural systems, tightly linked to adjacent habitats through the flow of matter and energy. However, there is limited research on mechanisms of connectivity such as movement of organisms and particulate matter and ways in which anthropogenic disturbance to interface habitats may affect immediate and adjacent...
Marine protected areas are increasingly popular tools for fisheries conservation and
enhancement worldwide. Monitoring programs that enable managers to track changes in fish stock abundance, size-frequency of target species, and species diversity are critical to evaluating the success of MPA's. The Port Honduras Marine Reserve (PHMR) in southern Belize encompasses...
There is little, if any, direct fossil evidence of the cardiovascular, respiratory, reproductive or digestive biology of dinosaurs. However, a variety of data can be used to draw reasonable inferences about the physiology of the carnivorous theropod dinosaurs (Archosauria: Theropoda). Extant archosaurs, birds and crocodilians, possess regionally differentiated, vascularized and...
This dissertation reviews the literature on the specialty area of dolphin assisted therapy (DAT), a subfield of animal assisted therapy (AAT). To date the literature on the effectiveness of DAT has been mixed although a majority of it is positive. The study was conducted with 40 parents whose children were...
Forestry in the United States is no longer merely a theory or a subject for discussion; it has gotten down to concrete things in the woods. Nor is the growing of timber confined to public lands; it is gradually making headway on land in private ownership. It is becoming an...
Contaminants can exist in a wide range of states in aqueous environments, especially in surface waters. They can be freely dissolved or associated with dissolved or particulate organic matter depending on their chemical and physical characteristics. The freely dissolved fraction represents the most bioavailable fraction to an organism. These freely...
Bibliographia Bopyridarum is prepared and maintained by John Markham, Arch Cape, Oregon, USA. Any reports of errors or omissions are greatly appreciated. Please contact Dr. Markham with suggestions: jmarkham@seasurf.net This file is updated annually.
Interest in social-emotional and character development (SECD) programming has intensified in recent years. SECD-related programs often seek to enhance a variety of health-related outcomes by addressing multiple influences and embracing a comprehensive approach that includes youth, school personnel, families, and communities. Alongside a comprehensive approach arises the need for a...
The perplexing condition of chronic pain, particularly low back pain, is the catalyst for interest in this research project. It is specifically focused on treatment trajectories of individuals experiencing chronic low back pain. The predominant interest is the utilization of alternative treatments and that of mainstream medicine (also referred to...
Staling in beer is inevitable. Oxidation and increased temperatures are the main causes of stale flavors in bottled beers. Since 1934, research has been done to identify compounds and pathways involved in creating stale flavors. Although many research papers report stale flavors, there is not a lexicon per se of...
This dissertation addresses the "multi-machine carryover sequence
dependent group-scheduling problem with anticipatory setups," which arises in
the printed circuit board (PCB) manufacturing. Typically, in PCB manufacturing
different board types requiring similar components are grouped together to
reduce setup times and increase throughput. The challenge is to determine the
sequence of...
Tibial stress fractures are common in runners. However, it is unclear what factors are associated with tibial stress fractures. This study aimed to investigate 1) magnitudes of bone contact forces occurring while running 2) whether or not repeated application of running loads is sufficient to explain tibial stress fractures and...
Angry driving behaviors that lead to acts of road rage have become a major public health concern. Understanding the differences between people who drive with a high level of anger and those who do not provides insight into possible prevention approaches. This study applied Richard Lazarus' Cognitive-Motivational-Relational (CMR) Model to...
Opakapaka (Pristipomoides filamentosus) is a snapper (family Lutjanidae) native to the waters around Hawaii. Recent population declines of this commercially important species have increased interest in the culture of this fish. Survival of this fish through the larval period in culture has been consistently low, usually not exceeding 2%. The...
Exposure to polycyclic aromatic hydrocarbons such as benzo[a]pyrene (B[a]P) has been determined to be a risk factor for various forms of human cancer. PAH DNA adducts have been shown to cause mutations, but carcinogenesis is also accompanied by alterations in gene expression. Inhibiting individual cytochrome P450s could clarify the interaction...
Sardines and anchovies are small pelagic fishes that support important commercial fisheries around the world. This project reviews the inverse cyclic behavior in the abundance of these two stocks, which is a striking feature in many regions. In addition, the project used qualitative loop analysis techniques to analyze the feasible...
The fate of antimicrobials entering the aquatic environment is an increasing concern for researchers and regulators, and recent research has focused on antimicrobial contamination from point sources, such as wastewater treatment facility outfalls. The terraccumulation of antimicrobials and mobility in diffuse pollution pathways should not be overlooked as a contributor...
Studies of mosquito preferences for avian hosts have found that some bird species are at greater risk than others of being fed upon by mosquitoes. The ecological factors that determine this interspecific variation in avian host use by mosquitoes have been little studied, despite the possibility that such variation may...
The symbiosis between cnidarians (e.g., corals or sea anemones) and intracellular dinoflagellate algae of the genus Symbiodinium is of immense ecological importance. In particular, this symbiosis promotes the growth and survival of reef corals in nutrient-poor tropical waters; indeed, coral reefs could not exist without this symbiosis. However, our fundamental...
Many studies suggest that weedy plant species are most successful when
soil nitrogen in abundant. Consequently, I used soil nitrogen manipulations to
determine if altering nitrogen would affect the establishment of both weedy and
native plant species in a western Oregon wetland prairie. In two studies, we
added carbon amendments...
Most metal ions have negative impacts on pulp mill operations. The concentrations of metal ions on pulp fibers and in washwaters rise significantly with increased wastewater recycling. The development of technology to remove these metal ions requires an understanding of how metal ions are bound to pulp components. It is...
Nonionic surfactants are commonly used to stabilize proteins during upstream and downstream processing and drug formulation. Surfactants stabilize the proteins through two major mechanisms: (i) their preferential location at nearby interfaces, in this way precluding protein adsorption; and/or (ii) their association with protein into "complexes" that prevent proteins from interacting...
The purpose of this study was to investigate the effect of trained hearing peer
tutors on the physical activity levels of deaf students in integrated elementary
physical education classes. This study utilized a single subject multiple
baseline design across subjects.
Eight deaf 4th and 5th grade students and eight hearing...
Saudi Arabia currently contains 31000 km (18600 mi)
of paved roads and 42000 km (25200 mi) of agricultural
roads, with the prospect of more roads to be constructed.
The low population (6 million) compared to the large area
of the country (2,253,300 km², 900,000 mi²) coupled with
the high cost...
Understanding how the interactions and feedbacks between plant function, climate, and soils ultimately affects the terrestrial water balance and subsurface flow processes is major challenge in scientific hydrology. This dissertation summarizes the findings of a manipulative climate warming experiment, an observational field study that utilized stable-isotope tracers, and associated modeling...
In a two part thesis, studies were made of two
different types of structure-activity relationships.
The first part consists of the synthesis and biological
evaluation of a number of 4-substituted pyrazoles and
isoxazoles as inhibitors of liver alcohol dehydrogenase.
In an effort to better define the steric and electronic
effects...
A new method is developed for solving linear optimization
problems based on the RPM network modeling technique which represents
the primal and the corresponding dual models simultaneously
upon a single graph. The network structure is used to eliminate
the need for explicit logical variables and to provide a graphic
tool...
Wild turkeys (Meleagris gallopavo) were first successfully introduced into Oregon and Washington in the 1960s; the population has grown in size and expanded in distribution to a point where it provides an important recreational hunting opportunity in both states that generates significant funds for habitat conservation and contributes financially to...
Based on a literature overview, this paper summarizes the impact and legacy of the contributions of Wilfried Brutsaert and Jean-Yves Parlange (Cornell University) with respect to the current state-of-the-art understanding in hydraulic groundwater theory. Forming the basis of many applications in catchment hydrology, ranging from drought flow analysis to surface...
A five year study of file-system metadata shows that the number of files increases by 200% and only a select few file-types contribute for over 35% of the files that exist on a file-system. It is difficult to point out a permanent selection of files that a user really cares...
Environmental swabs and meat samples from two of three seafood
processing plants sampled on the Oregon Coast were found to
contain Salmonella. Although these enteropathogens were not isolated
from the finished products, the danger of contamination is great
since the processing received by many seafoods is not designed to
yield...
Numerical solutions to the nonlinear Boussinesq equation, applied to a steeply sloping aquifer and assuming uniform hydraulic conductivity, indicate that late-time recession discharge decreases nearly linearly in time. When recession discharge is characterized by -dQ/dt=aQ[superscript b], this is equivalent to constant dQ/dt or b=0. This result suggests that a previously...
Soil moisture is an essential climate variable influencing land–atmosphere interactions, an essential hydrologic variable impacting rainfall–runoff processes, an essential ecological variable regulating net ecosystem exchange, and an essential agricultural variable constraining food security. Large-scale soil moisture monitoring has advanced in recent years, creating opportunities to transform scientific understanding of soil...
Escape from parasites in their native range is one of many mechanisms that can contribute to the success of an invasive
species. Gnathiid isopods are blood-feeding ectoparasites that infest a wide range of fish hosts, mostly in coral reef habitats.
They are ecologically similar to terrestrial ticks, with the ability...
This work set out to examine the potential contribution of five aliphatic lactones, γ-nonalactone, γ-decalactone, γ-dodecalactone, δ-decalactone and δ-dodecalactone to stone fruit aroma in beer. This work consists of three related studies; lactone olfaction thresholds, additive/synergistic aroma effects and a gas-chromatography-mass-spectrophometry method of analysis. First was the determination of these...
Nuclear pore complexes (NPCs) are huge assemblies formed from ~30 different nucleoporins, typically organized in subcomplexes. One module, the conserved Nup82 complex at the cytoplasmic face of NPCs, is crucial to terminate mRNA export. To gain insight into the structure, assembly, and function of the cytoplasmic pore filaments, we reconstituted...
Honey bees are important pollinators for many agricultural systems throughout the world. However, recent honey bee declines have caused great alarm, drawing attention to the vulnerability of worldwide agriculture to pollinator loss. These declines are often attributed to a combination of pests, pathogens, viruses, chemicals, and a lack of proper...
We characterize how regional watersheds function as simple, dynamic systems through a series of hysteresis loops. These loops illustrate the temporal relationship between runoff and terrestrial water storage using measurements from NASA's Gravity Recovery and Climate Experiment (GRACE) satellites in three regional-scale watersheds (>150 000 km² ) of the Columbia...
We characterize how regional watersheds function as simple, dynamic systems through a series of hysteresis loops using measurements from NASA's Gravity Recovery and Climate Experiment (GRACE) satellites. These loops illustrate the temporal relationship between runoff and terrestrial water storage in three regional-scale watersheds (> 150 000 km²) of the Columbia...
Tropical coral reef ecosystems are very important from both the ecological and economical
points of view. However, they are also particularly fragile, and have been
declining in recent years in most regions of the world, since they are highly susceptible
to anthropogenic stressors operating at global scales (e.g., global warming...
Volunteers are increasingly being recruited into citizen science projects to collect observations for scientific studies. An additional goal of these projects is to engage and educate these volunteers. Thus, there are few barriers to participation resulting in volunteer observers with varying ability to complete the project’s tasks. To improve the...
Among early adolescents (10-14 years), poor diet quality along with physical inactivity can contribute to an increased risk of obesity and associated biomarkers for chronic disease. Approximately one-third of United States (USA) children in this age group are overweight or obese. Therefore, attention to factors affecting dietary intake as one...
This dissertation is informally divided into three major sections. In the first section (Chapter 2) I use data from field mapping, isotopic geochronology, whole rock geochemistry and trace element concentrations in zircons to examine the petrology, geochemistry and ages of the Haquira East porphyry copper deposit of southern Peru. In...
Honey bees (Apis mellifera) are responsible for approximately $17 billion in crop production per year in the United States, and are arguably the most important pollinators in the nation. The future of crop pollination and production is threatened by widespread national honey bee colony losses, which have averaged approximately 30%...
Poor aqueous solubility of a large number of newly discovered chemical entities is posing a significant challenge for the formulation industry and is delaying their drug development. The number of formulation techniques available to solubilize these poorly soluble molecules is very limited. In addition to that, traditional formulation methods involve...
Passive sampling devices (PSDs) were used to measure air vapor and water dissolved phase concentrations of polycyclic aromatic hydrocarbons (PAHs) and oxygenated PAHs (OPAHs) at two different environmentally contaminated sites. Environmental contaminates like PAHs and OPAHs are present in both the atmospheric and aqueous environmental compartments. It is known that...
Background. Autism spectrum disorder (ASD) is characterized by impairments in social-communicative deficits and restricted and repetitive behaviors, interests, or activities (APA, 2013). While current estimates suggest 1 in 68 children are diagnosed with ASD, more alarming statistics indicate 1 in 50 school-aged children live with the disorder (Blumberg, Bramlett, Kogan,...
Accumulating human impacts on freshwater ecosystems have created a biodiversity crisis for freshwater fishes while conservation efficacy remains hampered by the Linnaean shortfall, the ignorance of many species that have yet to be discovered and described. The past discovery of most freshwater fish species was simply a matter of collecting...
Reed Canarygrass (RCG) is an aggressive invader in aquatic ecosystems that swiftly modifies the environment and decreases biodiversity. A physical model was used to investigate the mechanisms by which RCG spreads. Experimental trials were implemented to examine feedbacks between a mid-channel patch of the flexible RCG, hydraulics, and bedform evolution...
Ion pairs and solubility related to ion-pairing in water influence many processes in nature and in synthesis including efficient drug delivery, contaminant transport in the environment, and self-assembly of materials in water. Ion pairs are difficult to observe spectroscopically because they generally do not persist unless extreme solution conditions are...
The global terrestrial carbon sink offsets one-third of the world’s fossil fuel emissions, but the strength of this sink is highly sensitive to large-scale extreme events. In 2012, the contiguous United States experienced exceptionally warm temperatures and the most severe drought since the Dust Bowl era of the 1930s, resulting...
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change constrained by atmospheric observations. Glob Change Biol 16(4):1317–1337.
37. vanderVelde IR
Nerve damage during surgery is a common morbidity experienced by patients that leaves them with chronic pain and/or loss of function. Currently, no clinically approved imaging technique exists to enhance nerve visualization in the operating room. Fluorescence image-guided surgery has gained in popularity and clinical acceptance over the past decade...
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. 2012, 2, 177−187.
(8) Vahrmeijer, A. L.; Hutteman, M.; vander Vorst, J. R.; van de Velde,
C. J
Nerve damage during surgery is a common morbidity experienced by patients that leaves them with chronic pain and/or loss of function. Currently, no clinically approved imaging technique exists to enhance nerve visualization in the operating room. Fluorescence image-guided surgery has gained in popularity and clinical acceptance over the past decade...
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. Vahrmeijer, A.L., Hutteman, M., vander Vorst, J.R., van de Velde, C.J. & Frangioni, J.V.
Image-guided
BACKGROUND: The giant lizard of La Gomera (Gallotia bravoana), is an endemic lacertid of this Canary Island that
lives confined to a very restricted area of occupancy in a steep cliff, and is catalogued as Critically Endangered by
IUCN. We present the first population genetic analysis of the wild population...
Biodiversity continues to decline in the face of increasing anthropogenic pressures such as habitat destruction, exploitation, pollution and introduction of alien species. Existing global databases of species’ threat status or population time series are dominated by charismatic species. The collation of datasets with broad taxonomic and biogeographic extents, and that...
Sub-Saharan Africa (SSA) experiences soil degradation, food and livelihood insecurity, environmental pollution and lack of access to energy. Biochar has gained international research attention, but few studies have investigated the potential of biochar to address the challenges in SSA. This paper seeks to identify and evaluate generic potential opportunities and...
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(Lehmann et al., 2006; van Zweiten, et al., 2010).
However, most of the research on biochar production
Mangroves are becoming increasingly recognized as important nursery habitats for many juvenile fish and macroinvertebrate species, however little is known about their importance for zooplankton communities. The complex structure of mangrove environments may provide zooplankton populations with shelter, substrate, food, and protection from depredation. These factors could impact zooplankton survival,...
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., I. Nagelkerken, H. vander Meij, and G. vanderVelde. (2004) What attracts juvenile coral reef
Understanding the drivers and implications of anthropogenic disturbance of ecological connectivity is a key concern for the conservation of biodiversity and 50 ecosystem processes. Here, we review human activities that affect the movements and dispersal of aquatic organisms, including damming of rivers, river regulation, habitat loss and alteration, human-assisted dispersal...
A comprehensive tribal-level classification for the world's subfamilies of Hesperiidae, the skipper butterflies, is proposed for the first time. Phylogenetic relationships between tribes and subfamilies are inferred using DNA sequence data from three gene regions: 943 bp of cytochrome oxidase subunit I (COI) (in the mitochondrial genome), 739 bp of...
This book is a guide to the plant associations of the Oregon Dunes National Recreation Area. It includes general descriptions of the physical and biological setting of the Recreation Area: its climate, geology, landscape; soils, wildlife, and ecological processes. Analysis of quantitative field data identified 52 plant associations occurring in...
Potentially relevant literature for the years 1990-1999 was identified by (a) conducting keyword searches of computerized bibliographic databases, especially CAB Abstracts and Aquatic Sciences and Fisheries Abstracts, (b) reading through the tables of contents of a few especially relevant journals, (c) searching the internet for pertinent bibliographies, and (d) to...
Polyoxometalates are discrete anionic oxo clusters of the Group V and VI transition metals that can be conceptualized as molecular metal oxides. Because they are pairable with any alkali cation, a great deal of fundamental chemistry can be gleaned from their study, including solubility trends and insight into cation binding...
Biodiversity loss in highly diverse systems such as coral reefs has been linked to significant declines in the ecosystem functions and services provided by marine species. Ecological functioning of coral reefs and the resistance of coral reef fish communities to disturbance depend on the functional traits of species that promotes...
This research examined public perceptions of risk, behavioral intentions in the event of the M9 Cascadia Subduction Zone (CSZ) earthquake and tsunami on the Oregon Coast, and factors that may influence both attitudes and intentions. A household survey was conducted to understand public opinion in Seaside, Oregon, which is located...
As the world population continues to grow we must look for smarter and more sustainable ways to feed everyone. Milk is the first food humans consume and is a good source of protein, fat, and carbohydrates. The following studies sought to determine the effect of feeding blackberry pomace as a...
The predicted effects of climate change call for methods to assess the performance of agricultural systems across economic, environmental, and social dimensions over different spatial and temporal scales. For research and development to have an impact on system efficiency, potential impacts of climate change and adaptation strategies need to be...
Heavy metals, such as copper, zinc, and cadmium, are ubiquitous in stormwater and potentially toxic to aquatic organisms at low concentrations. Removal of heavy metals contamination by conventional treatment is expensive and does not always reduce metals concentrations low enough to ensure safety of all aquatic species. This research seeks...
Several crops have recently been identified as potential dedicated bioenergy feedstocks for the production of power, fuels, and bioproducts. Despite being identified as early as the 1980s, no systematic work has been undertaken to characterize the spatial distribution of their long-term production potentials in the United states. Such information is...
The influence of the flood pulse on fish populations has been posited, but infrequently tested or quantified. Here, we tested the effect of habitat on population size, using Prochilodus nigricans as a case study species. Floodplain habitat was based on the littoral zone area occupied by P. nigricans to feed....
The goal of the work in this dissertation was to identify alternative soil amendments to improve plant growth and yield during establishment of highbush blueberry (Vaccinium hybrid). Woody materials, such as sawdust and wood chips, have a high carbon to nitrogen (C:N) ratio and low water holding capacity, which can...
Cnidarians and their symbiotic dinoflagellates form a productive mutualism that shapes marine environments. In this symbiosis, dinoflagellate species from the family Symbiodiniacea reside within cnidarian host gastrodermal cells and provide the host with photosynthetically fixed carbon in exchange for host metabolites. This nutritional exchange allows both partners to thrive in...
The topics in this dissertation center on the snow processes that dominate mountain environments in the Western U.S. and Alaska, particularly in locations lacking long-term observational datasets or locales that are difficult to access in-person. Some are currently glacierized or have been glaciated in the recent past. Each of the...
During the peripartum period (3 weeks before through 3 weeks after calving, a.k.a. “transition”), high producing dairy cows experience, among others, , oxidative stress and immune suppression that compromise performance and increased incidence of diseases.Among trace minerals, supplementation of Selenium (Se) can help to improve the transition by enhancing glutathione...
In the face of climate change droughts are predicted to become more persistent, further intensifying the need for accurately predicting the timing and magnitude of summer streamflow in rivers. In order to determine the sensitivity of a watershed to drought, there is a need to describe what these drought conditions...
The Latino K-12 student population in the United States continues to increase. Estimates are that by 2025, one in every three students in the country will be of Hispanic/Latino origin. The challenges to the educational system from such growth are unprecedented. At no other time in U.S. history has there...
Agricultural systems are inherently complex; understanding these systems requires knowledge of climatology, plant physiology, soil physics, economics, and the human psychology of the farmers themselves. Decision support tools strive to leverage existing data to help guide stakeholders towards the best policies and practices for their situation. Quantitative crop simulation models...
Obesity is a complex multifactorial disease resulting from excessive energy intake compared to energy expenditure. The excess energy is mostly stored as fat in enlarged adipocytes, but some lipids may infiltrate other organs such as the liver to form ectopic fat. Adipose tissue and ectopic fat produce and secrete a...