Unusual for a comedy, Shakespeare’s The Winter’s Tale centres early modern
preservation: a state that was neither illness nor wellness, but a reprieve from
both degeneration and reproduction. Unlike survival or recovery, preservation
sits comfortably with death and even borrows some of its features. Moreover, as
a liminal state that...
Cell signaling under external stimulation is a critical mechanism that governs many biological processes such as cell proliferation, cell migration, and cell apoptosis, etc. For multicellular organisms, the ability to synchronize heterogeneous individual cellular responses through intercellular communication is crucial to maintain normal functionality. However, even though the biological pathways...
Oregon's estuaries are important ecosystems for scientific study. Consequently, knowledge of what research has been conducted helps us identify benchmarks and plan new projects. A comprehensive bibliography of published research, technical reports, local documents, and data sets is one means of recording this knowledge. For these reasons, the Guin Library...
Oregon's estuaries are important ecosystems for scientific study. Consequently, knowledge of what research has been conducted helps us identify benchmarks and plan new projects. A comprehensive bibliography of published research, technical reports, local documents, and data sets is one means of recording this knowledge. For these reasons, the Guin Library...
Oregon's estuaries are important ecosystems for scientific study. Consequently, knowledge of what research has been conducted helps us identify benchmarks and plan new projects. A comprehensive bibliography of published research, technical reports, local documents, and data sets is one means of recording this knowledge. For these reasons, the Guin Library...
Oregon's estuaries are important ecosystems for scientific study. Consequently, knowledge of what research has been conducted helps us identify benchmarks and plan new projects. A comprehensive bibliography of published research, technical reports, local documents, and data sets is one means of recording this knowledge. For these reasons, the Guin Library...
Oregon's estuaries are important ecosystems for scientific study. Consequently, knowledge of what research has been conducted helps us identify benchmarks and plan new projects. A comprehensive bibliography of published research, technical reports, local documents, and data sets is one means of recording this knowledge. For these reasons, the Guin Library...
Oregon's estuaries are important ecosystems for scientific study. Consequently, knowledge of what research has been conducted helps us identify benchmarks and plan new projects. A comprehensive bibliography of published research, technical reports, local documents, and data sets is one means of recording this knowledge. For these reasons, the Guin Library...
Oregon's estuaries are important ecosystems for scientific study. Consequently, knowledge of what research has been conducted helps us identify benchmarks and plan new projects. A comprehensive bibliography of published research, technical reports, local documents, and data sets is one means of recording this knowledge. For these reasons, the Guin Library...
The utility of high-throughput, computational screening has become an invaluable asset to the field of materials science. In the hierarchy of computational methods, the most accurate methods are often the most computationally expensive. However, as both the efficiency and fidelity of numerical techniques advance, high-quality screening of large materials datasets...
Coastal stream basins are of great importance to efforts aimed at refining our understanding of the earliest populations that inhabited the ancient Oregon coast. However, geomorphic responses to post-glacial sea level rise in these settings has produced depositional environments that destroy or deeply bury late Pleistocene and early Holocene-age archaeological...
Toxin production by cyanobacterial harmful algal blooms (cyanoHABs) in freshwater systems has lasting ecological and human impacts. Nutrients, light availability, hydrology, and microbial community composition impact the frequency and intensity of toxic cyanoHABs. Climate change will exacerbate toxic cyanoHABs, making real time and predictive monitoring a vital tool for managing...
The objective of this dissertation is to enhance the monitoring of forest ecosystems through the utilization of remotely sensed data to address the exigencies posed by the Anthropocene. On a global scale, rising temperatures and fluctuating precipitation patterns have strained forests and produced shifts in natural disturbance regimes. Additionally, the...
This thesis examines the origins and outcomes of Operation Paperclip, a program the U.S. government operated in the years immediately following WWII to recruit former Nazi doctors, scientists, and technicians, and capitalize on their research experience. As part of this operation, the U.S. welcomed two doctors who had conducted medical...
In a scenario where multiple Unmanned Aerial Vehicles (UAVs) run by different operators are conducting their independent missions in an urban environment, it is important that the limited airspace is shared in a fair manner. Clarity and uniformity in communicating mission specifications to a central controller is also crucial. This...
Bibliographia Bopyridarum is prepared and maintained by John Markham, Arch Cape, Oregon, USA. Any reports of errors or omissions are greatly appreciated. Please contact Dr. Markham with suggestions: jmarkham@seasurf.net This file is updated annually.
Multi-robot teams offer promising solutions for many long term deployments in remote and dangerous domains, such as extraterrestrial or underseas exploration. However, long term deployments present many problems preventing robot teams from operating effectively. Learning over long time scales is makes it difficult to assign credit to robots' actions, as...
The focus of this thesis is to design, characterize, and apply novel computational methods and molecular systems to interrogate heterogeneous human gut microbiome-related phenomena. In Chapter 2, I design, implement, and characterize a method for embedding co-occurrence patterns derived from massive 16s amplicon datasets. I use this method to 1....
Social robots benefit from a sense of humor, which requires the ability to recognize and adapt to human responses during playful interactions. Past work on humorous robots has classified audience responses with audio-based and preliminary visual-based methods following the joke punchline. Building on this progress, we conducted a survey of...
Beginning with the inception of American art history as a formal discipline in the 1940s, the dominant mode of interpreting nineteenth-century American landscape painting has been to view aspects of the landscape as symbols for grand cultural, religious, national, and moral narratives. While this method of interpretation highlights some key...
From 1914-1918 the world experienced humanity’s ultimate affirmation of malice on scales scant seen in the centuries before. The Great War wrought terror on an industrial scale, throwing men headlong unto landscapes rent low by fire and steel. Our collective unconscious image of the war does well to demonstrate this....
Hop (Humulus lupulus L. var. lupulus) is a diploid, dioecious plant with an extensive history of cultivation and use in brewing, as a textile, and for its therapeutic properties. Hop is prized for its ability to produce a variety of aromatic and flavor compounds, as well as compounds with anti-microbial...
Back pain is the leading cause of disability worldwide, entailing a significant socioeconomic impact. A primary source of back pain can be attributed to intervertebral disc (IVD) degeneration allowing nerve ingrowth, facet joint arthritis, disc bulging, and osteophyte formations that press on nearby nerve roots or the spinal cord. While...
North American beavers (Castor canadensis) are ecological engineers that improve biodiversity and can improve the health of riparian ecosystems. Beavers are generalist herbivores with some evidence of species preference, utilizing woody material for both food source and dam construction. In the South Slough National Estuarine Research Reserve, Charleston, Oregon, a...
We do not know how to align a very intelligent AI agent's behavior with human interests. I investigate whether—absent a full solution to this AI alignment problem—we can build smart {\ai} agents which have limited impact on the world, and which do not autonomously seek power. In this thesis, I...
Assessing AI systems is difficult. Humans rely on AI systems in increasing ways, both visible and invisible, meaning a variety of stakeholders need a variety of assessment tools (e.g., a professional auditor, a developer, and an end user all have different needs). We posit that it is possible to provide...
Dysferlin is a ∼230 kDa terminally anchored membrane protein that is ubiquitously expressed, but is particularly enriched in skeletal and cardiac muscle tissue. Mutations covering the length of the protein have been linked to muscle wasting diseases including limb-girdle muscular dystrophy and Myoshi myopathy. Dysferlin has been shown to play...
Animals aggregate and interact in nonuniform and nonrandom patterns, which lead to group level characteristics that have important evolutionary and ecological consequences. Network analysis provides a useful conceptual framework for linking animal interactions at all scales from dyads to communities, to populations and ecosystems. Despite exciting theoretical and applied advances...
A seasonal hair-loss syndrome of native deer began to occur in the Pacific Northwest United States in the mid-1990s. Clinical manifestations of the disease typically include large numbers of chewing lice on Columbia Black-tailed deer (Odocoileus hemionus columbianus) and Columbia White-tailed deer (Odocoileus virginianus leucurus). Expenditure of energy responding to...
Ph.D. candidate Qi Wei's thesis consists of two projects: Chemotherapy Project: a study based on the research paper "Predicting chemotherapy response of various cancer types using a variational auto-encoder approach" submitted to the bioRxiv preprint archive and accepted by the BMC bioinformatics; and Wound Monitor Project: implementing and assessing analytics...
We propose an approach for understanding control policies represented as recurrent neural networks. Recent work has approached this problem by transforming such recurrent policy networks into finite-state machines (FSM) and then analyzing the equivalent minimized FSM. While this led to interesting insights, the minimization process can obscure a deeper understanding...
Growing concern regarding the health effects of PFAS exposure through drinking water remains an issue at the forefront of many regulatory hurdles. Current data suggests that PFAS can be the cause of many negative health effects including changes in birth weight, thyroid disease, decreased fertility, and some forms of cancer....
Mental health among student athletes has gotten much more attention in the world of sport today. However, there has been a lack of research focusing on how the socioeconomic backgrounds of Division 1 student athletes can play a role in their mental health and their desire to seek out help...
Uses for materials with a large surface area and high porosity have grown sig-nificantly in recent years. Porous materials have found usage in applications such as separation, gas storage, sensing, purification and more, prompting researchers to find and discover numerous new porous materials to suit a specific purpose. Hundreds of...
This thesis focuses on performances of masculinity by British Royal Flying Corps (RFC) airmen in the charged landscape of the First World War prisoner of war (POW) camp. I examine how captive airmen coped with imprisonment by reasserting the familiar homosocial communities of pre-capture squadron life, particularly through practices associated...
Decentralizing resource control for community-based natural resource management (CBNRM) is a widely promoted scheme for natural resource governance worldwide. Researchers and policymakers have suggested that this approach has the potential to achieve positive social outcomes and succeed where centralized resource conservation has been inadequate. In reality, the powers transferred are...
Seafood processing is an important industry along the Oregon coast as it provides employment and seafood to coastal communities as well as to international markets. The industry has been an integral part of the identity of Coos County since the establishment of salmon canneries in the late 1800’s and has...
My mother named me after Hollywood icon Katharine Hepburn, but what made a working-class girl grow to love this posh celebrity so much? The obvious answer is that my mother aspired to be posh herself; but lack of money or sophistication were not the only things impacting her potential— there...
The lens dose equivalent (LDE) is a regulatory limit set to protect radiation workers. Current methods for estimating the LDE are specific to beam sources in a vacuum and require interpolating data from tables. A new set of deterministic equations for photon and electron point sources has been developed. These...
Humboldt Redwoods State Park in southern Humboldt County, California is a coastal redwood forest, a highly unique and valued ecosystem. It has many social, cultural, ecological, and economic values, including recreational benefits, heritage and aesthetic values, high biodiversity, nutrient cycling, and climate regulation. However, Humboldt County is at risk of...
Machine learning (ML) and deep learning (DL) models impact our daily lives with applications in natural language modeling, image analysis, healthcare, genomics, and bioinformatics. The exponential growth of biological sequence data necessitates accompanying advances in computational methods. Although deep learning is highly effective for detecting and classifying biological sequences, challenges...
In 1976-77 and 2010, Oregon State University (OSU) excavated portions of the enlisted men’s barracks and privy at Fort Hoskins, a Civil War-era fort. In operation from 1856 to 1865, this fort served as part of a security network to protect and monitor the recently created Coast Indian Reservation. The...