The freshwater copepod Salmincola californiensis is an ectoparasite of Pacific salmonids (Oncorhynchus spp.) Threatened and endangered salmonids that rear in the reservoirs have been reported to experience higher rates of infection by S. californiensis than would be experienced by their stream-reared counterparts. These high levels of infection can lead to...
Ceratonova shasta is a myxozoan fish parasite that impacts hatchery and wild populations of salmon and trout in the Pacific Northwest. Levels of the parasite in river water can be effectively monitored through direct filtration of parasite spores from water, extraction of total "environmental DNA" (eDNA), then quantitative polymerase chain...
Myxobolus squamalis is a Myxozoan parasite of salmonids, which contributes to lowered fitness of hatchery and wild fish in the Pacific Northwest of North America. The only GenBank DNA sequence of M. squamalis is from Oncorhynchus tschawytscha (Chinook), but is not linked to a published morphological description. There is a...
The waterborne, myxozoan parasite Ceratonova shasta is endemic to the Pacific Northwest and can be lethal to its secondary salmonid host, including the culturally, economically, and recreationally important spring Chinook salmon (Oncorhynchus tshawytscha) of the Deschutes River, OR. Previously described genotypes of C. shasta exhibit specificity with their salmonid hosts....
Biological invasions threaten native biodiversity, alter ecosystem function, and are a major cause of economic losses across the planet. The most impactful invaders alter disturbance regimes and initiate state shifts to outside the historical range of variability of the ecosystem. Concern for ecological and economic losses has prompted a rapid...
The myxozoan parasite Ceratomyxa shasta is a significant pathogen of juvenile salmonids in the Pacific Northwest of North America and is limiting recovery of Chinook (Oncorhynchus tshawytscha) and coho (O. kisutch) salmon populations in the Klamath River. We conducted a 5-year monitoring program that comprised concurrent sentinel fish exposures and...
Severe infection by the endemic myxozoan parasite, Ceratonova (synonym, Ceratomyxa) shasta, has been associated with declines in and impaired recovery efforts of populations of fall-run Chinook Salmon Oncorhynchus tshawytscha in the Klamath River, California. The parasite has a complex life cycle involving a polychaete worm host as well as a...
Parasites are ubiquitous members of ecological communities, capable of contributing to the decline of vulnerable populations. Therefore, monitoring parasite level is a critical component for host management. Molecular tools, such as quantitative polymerase chain reaction (qPCR), can be valuable additions to monitoring protocols that assess parasitic disease risk to hosts....
We have compared in situ measurements
near the leading-edges of wave-clouds observed during
the SUCCESS experiment with numerical simulations.
Observations of high supersaturations with respect to ice (> 50%) near the leading edge of a very cold wave cloud (T < -60°C) are approximately consistent
with recent theoretical and laboratory...
The mechanisms governing short- and long-term belowground carbon dynamics need to be understood. As part of a larger project developed to assess the effect of quantity and quality of litter inputs on the rate of soil organic matter (SOM) formation, I examined SOM in the H. J. Andrews Detritus Input...
The reality confronting ecosystem managers today is one of heterogeneous, rapidly transforming landscapes,
particularly in the areas more affected by urban and agricultural development. A landscape management
framework that incorporates all systems, across the spectrum of degrees of alteration, provides a fuller set of
options for how and when to...
The objectives of this study were to determine the
location and extent of populations of pygmy rabbits in Oregon,
and to describe several biotic and physical components within
communities that include pygmy rabbits. Interpretation of
aerial photographs, and information obtained from soil maps
and interviews with biologists and area residents,...
Student conduct has become increasingly significant in higher education as demands to address campus safety, student behaviors, and classroom management are increasingly prominent. Existing research focuses on the efficacy of student conduct policies and practices, but has not established how individuals understand student conduct as a myth, or a concept...
The woodlands of New York City's Central Park have seen varying levels of management and neglect since the creation of the park over 150 years ago. The Central Park Conservancy has aimed to restore, enhance, and elevate the stewardship of the park, including its woodlands and other Natural Areas, since...
Ceratomyxa shasta is a myxozoan parasite that infects salmonid fishes causing the disease ceratomyxosis that is characterized by severe hemorrhage and necrosis of the intestine and death of the fish host. Ceratomyxa shasta is endemic to the Pacific Northwestern United States and Canada, where epizootics are reported for both wild...
In a comparison of the mammalian and fish immune systems many similarities and differences are found. While most of the differences occur in the acquired or lymphoid arm of immunity, the nonlymphoid immune systems of fish and mammals share many similarities. For instance, both animal groups use phagocytic neutrophils and...
This report describes the isolation of a new virus from adult
chum salmon (Oncorhynchus keta) returning to the Tokushibetsu Hatchery,
Hokkaido, Japan. The agent was isolated in the CHSE-214 cell line
derived from chinook salmon (Oncorhynchus tshawytscha). The virus
replicated in selected fish cell lines incubated between 10 and 20°C...
Myxozoans are microscopic parasites, related to corals and jellyfish. Most Myxozoa probably have two-host lifecycles that require a vertebrate (typically fish) and invertebrate (annelid or bryozoan). However no life cycle is known from the Sphaerospora lineage.
I hypothesized that the life cycle of Sphaerospora elegans, a myxozoan parasite of three-spined...
With the need to integrate renewable energy sources into the current energy portfolio and the proximity of many population centers to an ocean coastline, it is pressing that marine energy systems, specifically wave energy converters (WECs), are evaluated as potential solutions for meeting energy needs. In order to best understand...
Pseudoloma neurophilia is the most common pathogen reported in zebrafish (Danio rerio) research facilities and is an important threat to the zebrafish model. This microsporidian parasite can cause clinical disease, but more importantly is a causative agent of non-protocol induced variation in research. Studies utilizing infected zebrafish, could potentially confound...
Few studies have directly compared denitrifying community composition and activities in soils by coupling molecular-genetic techniques and traditional measures of denitnfication. I investigated communities of denitrifying bacteria from adjacent meadow and forest soils in the Cascade Mountains, Oregon. A key gene in the denitrification pathway, N₂O reductase (nosZ), served as...
Descriptions of the fire regime in the Douglas-fir/western hemlock region of the Pacific Northwest traditionally have emphasized infrequent, predominantly stand-replacement fires and an associated linear pathway of stand development, where all stands proceed along a common pathway until reset by the next fire. Although such a description may apply in...
Generalisation is a key component of mathematical activity. Mathematicians often seek general formulae or wonder if a rule that holds in a particular dimension also holds in dimension n. However, generalisation is not limited to professional mathematicians; kindergarteners engage in generalisation when they seek patterns and algebra is sometimes described...
Enzymatic hydrolysis is a critical process in the conversion of lignocellulosic biomass into biofuels and biochemicals. Achieving high efficiencies and productivity during the enzymatic hydrolysis of biomass is the key for the commercially viable process. Downstream processing challenges require high product titers which in turn require the use of high...
Successive sampling population size estimation (SS-PSE) is a method used by government agencies and aid organizations around the world to estimate the size of hidden populations using data from respondent-driven sampling (RDS) surveys. SS-PSE ad-dresses a specific need in estimation and helps us evaluate the vulnerability of areas to HIV...
A fundamental objective of ecology and population biology is to identify factors that drive population dynamics and determine the population-level consequences of their interaction with the environment. Studies of reproductive performance can illuminate population dynamic processes, including the links between organismal biology, the environment, and life history theory. A central...
The fifth volume of a five-volume series is presented. The contents are arranged under the following chapter headings: (1) Purification, (2) Effects on Materials, (3) Heaters and Coolers, (4) Radiators, Condensers, and Boilers, and (5) Applications.
Wildfire impacts have intensified in many ecosystems across the western United States due to the combined impact of fire exclusion, climate change, and land management practices. However, on many of these landscapes, fire is a fundamental ecological process that has shaped vegetation structural and compositional diversity, ecosystem function, landscape pattern,...
Ceratonova gasterostea n. gen. n. sp. is described from the intestine of freshwater Gasterosteus aculeatus L. from the Klamath River, California. Myxospores are arcuate, 22.4 +/- 2.6 μm thick, 5.2 +/- 0.4 μm long, posterior angle 45 +/- 24°, with 2 sub-spherical polar capsules, diameter 2.3 +/- 0.2 μm, which...
The forest alpine tundra ecotone (FTE, also known as alpine treeline or subalpine parkland), is a conspicuous feature of mountain landscapes throughout the world. Climate change-driven increases in temperature are believed to result in FTE movement and tree invasion of subalpine meadows, which have been documented throughout the Northern Hemisphere...
Predicting recruitment, which is dependent on parent stock size and climate, is vital for forecasting productivity of fish stocks. The effects of climate can be analyzed via the use of climate indices. Three climate indices, the Pacific Decadal Oscillation, the North Pacific Gyre Oscillation, and the Oceanic Niño Index, describe...
Sagebrush steppe ecosystems in the Great Basin have become increasingly threatened by the proliferation of cheatgrass (Bromus tectorum L.), an invasive annual grass. Diverse sagebrush and perennial bunchgrass landscapes can be converted to homogenous cheatgrass grasslands mainly through the effects of fire. Although the consequences of this conversion are well...
Transmission dynamics of the actinospore stage of Ceratomyxa shasta to the salmonid host were investigated under field and laboratory conditions. The number of parasites transmitted and the transmission rate were compared between 2 different exposure durations and also among different water velocities, by means of field exposures. Under laboratory conditions,...
Silviculture systems that involve commercial thinning may provide higher quality wildlife habitat than traditional clearcut systems, yet such systems have not been vigorously tested. This prospective study examined forest floor animal abundance and habitat relationships under three different silviculture conditions: clearcuts, commercial thins, and uncuts. Eighteen stands, six per treatment,...
The recent identification of multiple genotypes of the salmonid parasite Ceratonova shasta with different virulence levels in Chinook salmon (Oncorhynchus tshawytscha) suggests that it may be possible to immunize fish against subsequent infection and disease. We hypothesized that exposure of Chinook salmon to the less virulent parasite genotype (II) prior...
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. Developmental and Comparative Immunology 43:243-256. 239
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Hallett, S. L., and J. L. Bartholomew. 2006
The primary purpose of this study was to (1) develop methods for the analysis of and (2) provide information on the chemical nature of reducing ends in typical cellulose substrates used for the study of cellulolytic enzymes. The studies were designed such that values obtained for cellulose substrates were compared...
Ceratomyxa shasta is a myxozoan parasite identified as a contributor to salmon mortality in the Klamath River, USA. The parasite has a complex life cycle involving a freshwater polychaete, Manayunkia speciosa and a salmonid. As part of ongoing research on how environmental parameters influence parasite establishment and replication, we designed...
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velocity on the Ceratomyxa shasta infectious cycle
Sarah J. Bjork and Jerri L. Bartholomew
In situ airborne sampling of refractory black carbon (rBC) particles and Ice Nuclei (IN) was conducted in and near an extratropical cyclonic storm in the western Pacific Ocean during the Pacific Dust Experiment, PACDEX, in the spring of 2007. Airmass origins were from Eastern Asia. Clouds associated primarily with the...
We monitored the distribution, abundance and productivity of the federally threatened Western Snowy Plover (Charadrius nivosus nivosus) along the Oregon coast from 3 April – 11 September 2015. From north to south, we surveyed and monitored plover activity at Sutton Beach, Siltcoos River estuary, the Dunes Overlook, North and South...
We monitored the distribution, abundance and productivity of the federally threatened Western Snowy Plover (Charadrius nivosus nivosus) along the Oregon coast from 1 April – 15 September 2014. From north to south, we surveyed and monitored plover activity at Sutton Beach, Siltcoos River estuary, the Dunes Overlook, North and South...
According to most health organizations, "obesity" (defined as body mass index [BMI] greater than 30) is a world health problem of "epidemic" proportions. The underlying assumption is that weight is a proxy for health. However, obesity prevention and reduction interventions are designed to regulate body weight, rather than improve health....
From 26 March – 19 September 2013 we monitored the distribution, abundance and productivity of the federally Threatened Western Snowy Plover (Charadrius nivosus nivosus) along the Oregon coast. From north to south, we surveyed and monitored plover activity at Sutton Beach, Siltcoos River estuary, the Dunes Overlook, North and South...
From 5 April – 21 September 2012 we monitored the distribution, abundance and productivity of the federally Threatened Western Snowy Plover (Charadrius nivosus nivosus) along the Oregon coast. From north to south, we surveyed and monitored plover activity at Sutton Beach, Siltcoos River estuary, the Dunes Overlook, North Tahkenitch Creek,...
A multispectral retrieval method is developed on the 100 km regional scale to extract
the temperature, particle size, fractional cover and 11-μm emissivity of clouds which
may be semitransparent in the infrared based on emitted radiances. The scheme utilizes
the nonlinear relationship between emitted radiances when clouds are semitransparent and...
Although science is widely accepted as a fundamental source of information underlying decisions about forest management and conservation, considerably less attention has been paid to the inevitable role that normative values and beliefs play in such decisions. This thesis highlights the normative dimensions of "ecological forestry," a strategy of forest...
This two-part study attempts to find appropriate mass dimension and terminal velocity relationships that,
when considered together with particle size distributions (PSD), agree with coincident measurements of ice
water content (IWC), and with variables related to higher moments such as the mean mass-weighted fall
speed. Reliable relationships are required for...
A continuous flow diffusion chamber (CFDC) was used to measure ice formation by
cloud particle residuals during the Cirrus Regional Study of Tropical Anvils and Cirrus
Layers-Florida Area Cirrus Experiment. These measurements were directed toward
determining the relative contributions of homogeneous nucleation, heterogeneous
nucleation, and secondary ice formation processes to...
Managing Microdochium patch on intensively manicured annual bluegrass putting greens is a challenge for turfgrass professionals in cool-humid climates similar to the Pacific Northwest. Fungicides are the predominant means to mitigate damage caused by this fungal pathogen, however pesticide restrictions are making it even more challenging to suppress Microdochium patch....
Simulations of past climates require altered
boundary conditions to account for known shifts in the Earth
system. For the Last Glacial Maximum (LGM) and subsequent
deglaciation, the existence of large Northern Hemisphere
ice sheets caused profound changes in surface topography
and albedo. While ice-sheet extent is fairly well
known, numerous...
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Ullman, D. J., LeGrande, A. N., Carlson, A. E., Anslow, F. S., and Licciardi, J. M.:
Assessing the