Listeria monocytogenes contamination continues to pose challenges for the food industry and there is demand for effective methods of food preservation and protection that can also be considered clean label. A promising source of antilisterial compounds may be sourced from bacteria that produce novel byproducts. Ribosomally synthesized and post-translationally modified...
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2.4 The ecology of dairy processing
The black-footed ferret is a meso-predator within the Great Plains region of North America. Before the 1900s, black-footed ferret populations were self-sustaining in large ecological patches throughout the geographical range of the Great Plains. During the 1900s, various factors such as the systematic extermination of prairie dogs (the primary food...
Food waste (FW), brewery waste (BW), and fats, oils, and greases (FOG), are prevalent waste streams in municipalities across the country, particularly in the Pacific Northwest (PNW). Anaerobic digestion (AD), the microbial-mediated transformation of organic waste into methane-rich biogas, offers a sustainable, energy-generating, waste management solution for these wastes. Anaerobic...
Kombucha is a fermented sweet tea beverage of Asian origin which has become popular in the West due to its distinct flavor and possible health benefits. Kombucha is fermented by inoculating sweet tea with yeast and bacteria until a pellicle, referred to as a SCOBY (symbiotic culture of bacteria and...
The Northern Rubber Boa (Charina bottae) is a small, secretive boa native to the Pacific Northwest. Despite this being possibly the highest latitude boas and one of only two boas native to the continental U.S., it has received surprisingly little attention. Most of the research on the natural history of...
Tooth decay in the form of dental caries and cavities is estimated to be among the most common health conditions globally, with treatment of these oral diseases resulting in a massive, world-wide economic burden. The cause of this demineralization of teeth is rooted in the action of complex microbial biofilms...
Two ecologically important lamprey species found in the endorheic Goose Lake Basin face conservation threats; however, relatively little is known about their habitat needs or spatial distribution. Lamprey and their habitat are often found to be patchy; to evaluate these relationships for the lamprey in this basin, I utilized a...
Through a desk-top analysis, this research shows that South African women have gained and utilize specialized skills, behaviors, and adaptations through their daily activities which are useful when applied to water resource management. Further, South African women are shown to build and draw on social capital as a way to...
The Goose Lake Basin, situated on the border of Oregon and California, USA, faces significant challenges from drought, wildfire, and other environmental stressors. This region hosts numerous endemic fish species such as the Goose Lake redband trout (Oncorhynchus mykiss newberri), Goose Lake lamprey (Entosphenus sp.), Goose Lake tui chub (Siphateles...
Managed honey bees (Apis mellifera) play a vital role in pollinating cultivated crops worldwide. Honey bee colony declines reported in the past two decades have been associated with stressors such as pests and diseases, pesticide exposure, and poor nutrition. In the wake of these colony declines, beekeepers have strived to...
Microplastics (MPs) are plastic particles less than 5 mm in diameter. These contaminants are increasingly found in the environment due to increased plastic production, use, and improper disposal. Detecting and measuring these contaminants in the environment has proven difficult, requiring the use of fate and transport models to assess MP...
Daikon, mizuna, mizspoona, and komatsuna are novel Asian vegetables for which a market exists in Oregon, especially in the organic sector. However, these crops are currently not grown widely in the area, despite the favorable growing environment of Oregon’s Willamette Valley. Little is known about the appropriate application level of...
Septoria canker remains the most important disease of poplars in intensively managed forest plantations. Genetic resistance has long been considered the best way to manage for this disease. Transgenic resistance mediated by RNA silencing against pathogens and pests (HIGS: host-induced gene silencing) has shown promise in other pathosystems but has...
Streptococcus pneumoniae and Influenza A Virus both primarily infect the upper respiratory tract, with more severe disease occurring during coinfection than would be caused by either pathogen independently. Until recently, characterization of the interactions between these two pathogens has occurred exclusively in the context of a host or using host-derived...
Humans have always been fascinated with whales; from prominent features in mythology, to stories of terrifying monsters on the high seas, to globalized utility, to symbolic wildness and radical environmentalism, to figures and statistics, how have human relationships with whales been understood throughout time? Because humans have a need to...
Freshwater systems cycle carbon along a spatial and temporal biogeochemical continuum, across which ecosystem processes contribute to transformations of organic matter (OM). Various ecological constraints impact rates OM transformation and production and consumption of the energetic end of respiration, methane. Microbiological processing and complete reduction of carbon substrates to methane...
Coral reefs, found in tropical regions, are renowned for their rich biodiversity and their contributions to ecological, cultural, and economic aspects worldwide. The success of coral reefs hinges on the symbiotic partnership between corals and their dinoflagellate algae, from the family Symbiodiniaceae. The algae reside within the coral host’s gastrodermal...
Deep mixing events in the ocean’s surface layer act as physical drivers of carbon export by detraining dissolved and particulate organic matter, including surface phytoplankton communities, to depth. Once removed from the sunlit surface ocean environment, phytoplankton accumulation rates are dependent on the relative contributions of loss processes, such as...
Since the decline of salmonid populations in the Pacific Northwest, supplementation programs have become frequently implemented by hatcheries as a way to protect and conserve wild stock. However, hatchery-reared fish have lower fitness than wild fish which is likely due to adaptation to the hatchery environment, i.e., domestication selection. Fish...
Honey bees are vital for our food production and ecosystem due to their critical pollination services. The beekeepers in the United States and worldwide have reported significant colony losses for over fifteen years. Several stressors are implicated in these colony declines, including parasites, diseases, poor nutrition, and pesticide exposure. There...
Early seral forests regenerating from stand-replacing disturbances provide unique habitat for many species in productive, temperate forest landscapes and contribute to supporting biodiversity. Population declines in some species associated with early seral forests have prompted concerns about the conservation of these habitats, particularly the characteristic structural and compositional complexity associated...
There has been much discussion in the conservation and policy realms of COVID-19 as a zoonotic disease, or a disease transmitted from wildlife to humans. However, wildlife consumption in China is not only a potential source of disease but also a practice embedded in complex beliefs about health. This paper...
Continental shelf sediments are sinks for dissolved oxygen and sources of many major and minor nutrients required for oceanic surface primary production, resulting in a strong coupling between benthic and pelagic biogeochemical cycling. However, the influence and spatiotemporal variability of benthic remineralization on bottom-water chemistry and the supply of nutrients...
Oregon's estuaries are important ecosystems for scientific study. Consequently, knowledge of what research has been conducted helps us identify benchmarks and plan new projects. A comprehensive bibliography of published research, technical reports, local documents, and data sets is one means of recording this knowledge. For these reasons, the Guin Library...
Oregon's estuaries are important ecosystems for scientific study. Consequently, knowledge of what research has been conducted helps us identify benchmarks and plan new projects. A comprehensive bibliography of published research, technical reports, local documents, and data sets is one means of recording this knowledge. For these reasons, the Guin Library...
Oregon's estuaries are important ecosystems for scientific study. Consequently, knowledge of what research has been conducted helps us identify benchmarks and plan new projects. A comprehensive bibliography of published research, technical reports, local documents, and data sets is one means of recording this knowledge. For these reasons, the Guin Library...
Oregon's estuaries are important ecosystems for scientific study. Consequently, knowledge of what research has been conducted helps us identify benchmarks and plan new projects. A comprehensive bibliography of published research, technical reports, local documents, and data sets is one means of recording this knowledge. For these reasons, the Guin Library...
Oregon's estuaries are important ecosystems for scientific study. Consequently, knowledge of what research has been conducted helps us identify benchmarks and plan new projects. A comprehensive bibliography of published research, technical reports, local documents, and data sets is one means of recording this knowledge. For these reasons, the Guin Library...
Oregon's estuaries are important ecosystems for scientific study. Consequently, knowledge of what research has been conducted helps us identify benchmarks and plan new projects. A comprehensive bibliography of published research, technical reports, local documents, and data sets is one means of recording this knowledge. For these reasons, the Guin Library...
Oregon's estuaries are important ecosystems for scientific study. Consequently, knowledge of what research has been conducted helps us identify benchmarks and plan new projects. A comprehensive bibliography of published research, technical reports, local documents, and data sets is one means of recording this knowledge. For these reasons, the Guin Library...
Over the last several decades, potato production has increased globally as it has been recognized as an important component to improving food security. However, potato production has been continuously challenged by pests. Current pest management practices rely heavily on chemical pesticides. Unfortunately, the overuse of pesticides can be harmful to...
Grapevine Trunk Diseases (GTDs) are caused by a group of fungal pathogens that attack the xylem tissue of mature grapevines worldwide. In the past 30 years, their incidence has increased, both in emerging grape-producing regions, as well as those with an extended history of viticulture. In the same time span,...
Beginning in 2020, the International Maritime Organization International Convention for the Prevention of Pollution from Ships (MARPOL) required vessels to comply with new sulfur air emission standards in Sulphur Emission Control Areas (Baltic Sea, North Sea, and off the coasts of the US and Canada) by: 1) using 0.1% sulfur...
Rhizopus microsporus is a globally ubiquitous opportunistic human and plant pathogen that is known to harbor endosymbiotic bacteria. Differences between populations of clinical and environmental R. microsporus isolates have yet to be assessed on a global scale. Whole-genome sequence data were used to explore fungal biology and to assess potential...
Natural products have long been an important source of resources for humans. Many of these compounds possess unique chemical structures and potent biological properties. By targeting natural products with specific chemical properties, we can gain a better understanding of the roles these compounds play in the environment and their interactions...
Copper and iron are essential micronutrients that are required by marine primary producers for a variety of metabolic processes. Over 99% of both copper and iron are bound within organic complexes in the marine environment, however the molecular identity of many of these complexes remains unknown. The speciation of these...
The red tree vole (Arborimus longicaudus) is an arboreal Arvicoline rodent endemic to conifer dominated forests of western Oregon and northwestern California. While commonly associated with old forests, often inhabiting stands over 80 years old, tree voles have also been found in young forests between 20 and 80 years old....
Anthropogenic induced climate change is predicted to alter distribution of existing plant populations. As plants migrate over space and time, populations often fragment and contract, affecting basic elements of population dynamics (e.g., population size, gene flow, genetic diversity, etc.). Little is known, however, how these impacts on plant species will...
The seafood industry has a problem of underutilization of harvested and processed fish. Up to 60% of the weight of the fish is considered a byproduct that is typically made into fishmeal for livestock and aquaculture feed, a low-value and non-food grade product. Two species that make up major fisheries...
In Oregon perennial and annual grass seed cropping systems conservation management practices and their impacts on soil health and soil microbial community is not well understood. There is strong motivation to employ conservation tillage and other conservation practices to curb atmospheric carbon levels and improve soil health. However, the few...
A dissertation describing the results of a series of greenhouse experiments conducted to better understand phytoremediation in stormwater bioretention systems.
Southeast Alaska is located on the traditional territory of the Lingít, Haida, and Tsimshian People. It is comprised of the largest temperate rainforest in the world, with subregions receiving over 500 cm of rain annually. Climate change is predicted to alter the region's timing, type, and magnitude of precipitation and...
In the United States, children from underserved racial/ethnic backgrounds encounter greater environmental risk both in terms of the physical environment (e.g., housing quality, access to resources like health services and jobs, and exposure to environmental toxins) and the social environment (e.g., social support, neighborhood crime, racism, and discrimination), due to...
The effects of fire on above-ground forest systems have been extensively studied. However, research on fire effects on belowground processes is lacking. While the soil microbiome is understood to be vital to conifer growth and regeneration, the complexity of soils means that research on the topic has largely been accomplished...
In the past fifty years, per- and polyfluoroalkyl substances (PFASs) have become alarming global pollutants. In 2019, the United States (U.S.) Environmental Protection Agency (EPA) ultimately classified them as emerging contaminants and established an action plan to address PFAS and protect public health through developing, identifying, monitoring, and remediating current...
Ocean deoxygenation is predicted to increase in severity over the next few decades, posing a threat to marine life and fishing economies. Improved predictions of ocean deoxygenation depend on a better understanding of the biogeochemical mechanisms that underly this process. Within the realm of biogeochemical mechanisms, this project specifically investigated...
The intricate relationship between wildlife health and the quality of their environment is well established, with technological advances increasing our understanding and aiding the unraveling of underlying mechanisms. Large herbivores require forage of sufficient quality to maintain their condition to reproduce and survive, all while warding off parasites and predators...