Cell signaling under external stimulation is a critical mechanism that governs many biological processes such as cell proliferation, cell migration, and cell apoptosis, etc. For multicellular organisms, the ability to synchronize heterogeneous individual cellular responses through intercellular communication is crucial to maintain normal functionality. However, even though the biological pathways...
Oregon's estuaries are important ecosystems for scientific study. Consequently, knowledge of what research has been conducted helps us identify benchmarks and plan new projects. A comprehensive bibliography of published research, technical reports, local documents, and data sets is one means of recording this knowledge. For these reasons, the Guin Library...
The following pages set out to document the German far-right since 1945, along with the responses from the German government and the experience of minorities that extremists tend to target. This study finds that the German government’s heavy-handed response to visible far-right political parties as early as the 1950s consequently...
Secure Computation is a powerful tool that enables a set of parties to jointly compute any function over their private inputs, without a trusted third party. Private Set Intersection is a specific case of two-party Secure Computation, where Alice (with private set X) and Bob (with private set Y) specifically...
Investigation on barley genotype contribution to beer flavor is a relatively new area of research but has interest from members of the malting barley supply chain. This body of work builds upon previous studies by approaching it from new angles that further supports the malting and brewing industries’ interests around...
Dual use pasture systems, sometimes referred to as dual purpose pasture systems, take advantage of the land being used to maximize multiple outputs from a single area. Developing a system to support both production of grazing livestock as well as pollinator health is of increasing importance in pasture-based farming systems....
The focus of this thesis is to design, characterize, and apply novel computational methods and molecular systems to interrogate heterogeneous human gut microbiome-related phenomena. In Chapter 2, I design, implement, and characterize a method for embedding co-occurrence patterns derived from massive 16s amplicon datasets. I use this method to 1....
Climate model simulations and paleoclimate proxies are two tools that enable an understanding of the climate history of the Earth. When utilized together, they form a powerful paradigm for understanding past changes. Proxies are the only physical link to the past conditions on Earth, and models “fill in the gaps”...
Hop (Humulus lupulus L. var. lupulus) is a diploid, dioecious plant with an extensive history of cultivation and use in brewing, as a textile, and for its therapeutic properties. Hop is prized for its ability to produce a variety of aromatic and flavor compounds, as well as compounds with anti-microbial...
We explore the application of deep learning to the disparate fields of natural language processing and computational biology. Both the sentences uttered by humans as well as the RNA and protein sequences found within the cells of their bodies can be considered formal languages in computer science, as sets of...