Index Catalog // ScholarsArchive@OSU

Tello-RuizGramene2016Comparative.pdf

Creator:: Tello-Ruiz, Marcela K., Stein, Joshua, Wei, Sharon, Preece, Justin, Olson, Andrew, Naithani, Sushma, Amarasinghe, Vindhya, Dharmawardhana, Palitha, Jiao, Yinping, Mulvaney, Joseph, Kumari, Sunita, Chougule, Kapeel, Elser, Justin, Wang, Bo, Thomason, James, Bolser, Daniel M., Kerhornou, Arnaud, Walts, Brandon, Fonseca, Nuno A., Huerta, Laura, Keays, Maria, Tanga, Y. Amy, Parkinson, Helen, Fabregat, Antonio, McKay, Sheldon, Weiser, Joel, D'Eustachio, Peter, Stein, Lincoln, Petryszak, Robert, Kersey, Paul J., Jaiswal, Pankaj, and Ware, Doreen
Abstract:: Gramene (http://www.gramene.org) is an online resource for comparative functional genomics in crops and model plant species. Its two main frameworks are genomes (collaboration with Ensembl Plants) and pathways (The Plant Reactome and archival BioCyc databases). Since our last NAR update, the database website adopted a new Drupal management platform. The...
Full Text:: genomics and pathway resources Marcela K. Tello-Ruiz1, Joshua Stein1, Sharon Wei1, Justin Preece2, Andrew

Tello-RuizGramene2016ComparativeSupplementaryTablesS1-S6.pdf

Creator:: Tello-Ruiz, Marcela K., Stein, Joshua, Wei, Sharon, Preece, Justin, Olson, Andrew, Naithani, Sushma, Amarasinghe, Vindhya, Dharmawardhana, Palitha, Jiao, Yinping, Mulvaney, Joseph, Kumari, Sunita, Chougule, Kapeel, Elser, Justin, Wang, Bo, Thomason, James, Bolser, Daniel M., Kerhornou, Arnaud, Walts, Brandon, Fonseca, Nuno A., Huerta, Laura, Keays, Maria, Tanga, Y. Amy, Parkinson, Helen, Fabregat, Antonio, McKay, Sheldon, Weiser, Joel, D'Eustachio, Peter, Stein, Lincoln, Petryszak, Robert, Kersey, Paul J., Jaiswal, Pankaj, and Ware, Doreen
Abstract:: Gramene (http://www.gramene.org) is an online resource for comparative functional genomics in crops and model plant species. Its two main frameworks are genomes (collaboration with Ensembl Plants) and pathways (The Plant Reactome and archival BioCyc databases). Since our last NAR update, the database website adopted a new Drupal management platform. The...
Full Text:: ., J. Preece, J. A. Kimbrel, G. L. Marchini, A. Sage, K. Youens-Clark, M. B. Cruzan and P. Jaiswal

Gramene 2016: comparative plant genomics and pathway resources

Creator:: Tello-Ruiz, Marcela K., Stein, Joshua, Wei, Sharon, Preece, Justin, Olson, Andrew, Naithani, Sushma, Amarasinghe, Vindhya, Dharmawardhana, Palitha, Jiao, Yinping, Mulvaney, Joseph, Kumari, Sunita, Chougule, Kapeel, Elser, Justin, Wang, Bo, Thomason, James, Bolser, Daniel M., Kerhornou, Arnaud, Walts, Brandon, Fonseca, Nuno A., Huerta, Laura, Keays, Maria, Tanga, Y. Amy, Parkinson, Helen, Fabregat, Antonio, McKay, Sheldon, Weiser, Joel, D'Eustachio, Peter, Stein, Lincoln, Petryszak, Robert, Kersey, Paul J., Jaiswal, Pankaj, and Ware, Doreen
Abstract:: Gramene (http://www.gramene.org) is an online resource for comparative functional genomics in crops and model plant species. Its two main frameworks are genomes (collaboration with Ensembl Plants) and pathways (The Plant Reactome and archival BioCyc databases). Since our last NAR update, the database website adopted a new Drupal management platform. The...
Resource Type:: Article

AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture

Creator:: Harper, Lisa, Campbell, Jacqueline, Cannon, Steve, Carson, James, Condon, Bradford, Cooper, Laurel, Dunn, Nathan, Elsik, Christine G., Farmer, Andrew, Ficklin, Stephen P., Grant, David, Grau, Emily, Cannon, Ethalinda K. S., Herndon, Nic, Hu, Zhi-Liang, Humann, Jodi, Jaiswal, Pankaj, Jonquet, Clement, Laporte, Marie-Angelique, Larmande, Pierre, Lazo, Gerard, McCarthy, Fiona, Menda, Naama, Jung, Sook, Mungall, Christopher J., Munoz-Torres, Monica C., Naithani, Sushma, Nelson, Rex, Nesdill, Daureen, Park, Carissa, Reecy, James, Reiser, Leonore, Sanderson, Lacey-Anne, Sen, Taner Z., Poelchau, Monica, Staton, Margaret, Subramaniam, Sabarinath, Tello-Ruiz, Marcela Karey, Unda, Victor, Unni, Deepak, Wang, Liya, Ware, Doreen, Wegrzyn, Jill, Williams, Jason, Woodhouse, Margaret, Walls, Ramona, Yu, Jing, Main, Doreen, Andorf, Carson, Arnaud, Elizabeth, Berardini, Tanya Z., and Birkett, Clayton
Abstract:: The future of agricultural research depends on data. The sheer volume of agricultural biological data being produced today makes excellent data management essential. Governmental agencies, publishers and science funders require datamanagement plans for publicly funded research. Furthermore, the value of data increases exponentially when they are properly stored, described, integrated...
Resource Type:: Article
Full Text:: , Taner Z. Sen19, Margaret Staton10, Sabarinath Subramaniam7, Marcela Karey Tello-Ruiz25, Victor Unda3

Time scale and intensity dependency in multiplicative cascades for temporal rainfall disaggregation

Creator:: Rupp, David E., Keim, Richard F., Ossiander, Mina, Brugnach, Marcela, and Selker, John S.
Abstract:: Multiplicative random cascades (MRCs) can parsimoniously generate highly intermittent patterns similar to those in rainfall. The elemental MRC model parameter is the cascade weight, which determines how rainfall at one scale is partitioned at the next smallest scale in the cascade. While it is known that the probability density of...
Resource Type:: Article
Full Text:: cascades for temporal rainfall disaggregation David E. Rupp,1,2 Richard F. Keim,3 Mina Ossiander,4 Marcela

Fishermen's Values Concerning the Queen Conch and Lobster in Boca de Yuma, East National Park, Dominican Republic

Creator:: Ruiz, Victor
Abstract:: This paper, that follows from the ongoing Ecost project, departs from the reality of marine biodiversity degradation in the Caribbean. It first enquires how local fishing communities appreciate and measure the degradation of marine biodiversity. In this connection, it asks whether communities have social and cultural attachments to particular species....
Resource Type:: Research Paper
Full Text:: , DOMINICAN REPUBLIC Victor Ruiz, EQUIS/INTEC, vedruiz@gmail.com ABSTRACT This paper, that follows

A genome scale metabolic network for rice and accompanying analysis of tryptophan, auxin and serotonin biosynthesis regulation under biotic stress

Creator:: Dharmawardhana, Palitha, Ren, Liya, Amarasinghe, Vindhya, Monaco, Marcela, Thomason, Jim, Ravenscroft, Dean, McCouch, Susan, Ware, Doreen, and Jaiswal, Pankaj
Abstract:: Background: Functional annotations of large plant genome projects mostly provide information on gene function and gene families based on the presence of protein domains and gene homology, but not necessarily in association with gene expression or metabolic and regulatory networks. These additional annotations are necessary to understand the physiology, development...
Resource Type:: Article
Full Text:: regulation under biotic stress Palitha Dharmawardhana1, Liya Ren2, Vindhya Amarasinghe1, Marcela Monaco2, Jim

Measurement of K⁺ production in charged-current ν[subscript]μ interactions

Creator:: Marshall, C. M., Aliaga, L., Altinok, O., Bellantoni, L., Bercellie, A., Betancourt, M., Bodek, A., Bravar, A., Budd, H., Cai, T., Carneiro, M. F., Chvojka, J., da Motta, H., Devan, J., Dytman, S. A., Díaz, G. A., Eberly, B., Endress, E., Felix, J., Fields, L., Filkins, A., Fine, R., Gago, A. M., Galindo, R., Gallagher, H., Ghosh, A., Golan, T., Gran, R., Griswold, S., Harris, D. A., Higuera, A., Hurtado, K., Kiveni, M., Kleykamp, J., Kordosky, M., Le, T., Maher, E., Majoros, I., Manly, S., Mann, W. A., Martinez Caicedo, D. A., McFarland, K. S., McGivern, C. L., McGowan, A. M., Messerly, B., Miller, J., Mislivec, A., Morfín, J. G., Mousseau, J., Naples, D., Nelson, J. K., Norrick, A., Nuruzzaman, Osta, J., Paolone, V., Park, J., Patrick, C. E., Perdue, G. N., Rakotondravohitra, L., Ramirez, M. A., Ransome, R. D., Ray, H., Ren, L., Rimal, D., Rodrigues, P. A., Rosenberg, M., Ruterbories, D., Schellman, H., Schmitz, D. W., Shadler, L. A., Simon, C., Solano Salinas, C. J., Sánchez, S. F., Tice, B. G., Valencia, E., Walton, T., Wang, Z., Watkins, P., Wiley, K., Wolcott, J., Wospakrik, M., Zhang, D., and MINERvA Collaboration
Abstract:: Production of Kþ mesons in charged-current νμ interactions on plastic scintillator (CH) is measured using MINERvA exposed to the low-energy NuMI beam at Fermilab. Timing information is used to isolate a sample of 885 charged-current events containing a stopping Kþ which decays at rest. The differential cross section in Kþ...
Resource Type:: Article
Full Text:: . Higuera,1,9,† K. Hurtado,7,13 M. Kiveni,5 J. Kleykamp,1 M. Kordosky,2 T. Le,4,14 E. Maher,15 I. Majoros

Final_Seminar_Jose_Solis.pdf

Creator:: Solis-Ruiz, Jose and Solis-Ruiz, Jose M.
Abstract:: Vibrio cholerae a major health problem in developing countries because of its ability to cause the disease cholera in humans. As V. cholerae bacteria are common inhabitants of temperate marine and brackish water environments worldwide, they are subject to intense top-down pressure by amoebae, which can affect their survival and...
Full Text:: . Solis-Ruiz •John Snow postulated Cholera to be a digestive disease (enters through oral-fecal route

Predation_Thesis_Jose_Solis.pdf

Creator:: Solis-Ruiz, Jose and Solis-Ruiz, Jose M.
Abstract:: Vibrio cholerae a major health problem in developing countries because of its ability to cause the disease cholera in humans. As V. cholerae bacteria are common inhabitants of temperate marine and brackish water environments worldwide, they are subject to intense top-down pressure by amoebae, which can affect their survival and...
Full Text:: By: Jose M. Solis-Ruiz An Undergraduate Thesis Submitted to Oregon State University

ScholarsArchive@OSU

Tello-RuizGramene2016Comparative.pdf

Tello-RuizGramene2016ComparativeSupplementaryTablesS1-S6.pdf

Gramene 2016: comparative plant genomics and pathway resources

AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture

Time scale and intensity dependency in multiplicative cascades for temporal rainfall disaggregation

Fishermen's Values Concerning the Queen Conch and Lobster in Boca de Yuma, East National Park, Dominican Republic

A genome scale metabolic network for rice and accompanying analysis of tryptophan, auxin and serotonin biosynthesis regulation under biotic stress

Measurement of K⁺ production in charged-current ν[subscript]μ interactions

Final_Seminar_Jose_Solis.pdf

Predation_Thesis_Jose_Solis.pdf

Limit your search

Academic Affiliation

Advisor

Conference Name

Conference Section/Track

Creator

Contributor

Date

Decade

Degree Field

Degree Level

Degree Name

File Format

Language

License

Non-Academic Affiliation

Peer Reviewed

Resource Type

Rights Statement

Subject

Search Constraints

Search Results

Limit your search