This article describes the motivation, design, and progress of the Journal of Open Source Software (JOSS). JOSS is a free and open-access journal that publishes articles describing research software. It has the dual goals of improving the quality of the software submitted and providing a mechanism for research software developers...
Naturally occurring assemblies, such as DNA and proteins, utilize intermolecular forces (i.e H-bonding and van der Waals) to assemble. Utilizing these electrostatic interactions has only just started in the past five decades to be a tool used in synthetic chemistry in what is known as supramolecular chemistry. Supramolecular chemistry has...
For the sample of wide-ringed Douglas-fir discussed in this report, the relationship between specific gravity and percentage of summerwood is linear over a range of 16 to 60 percent summerwood content of the annual ring. The specific gravity of the summerwood and springwood portions of 96 dissected annual rings is...
Mathematical sophistication increases rapidly as students transition from lower- to upper-division physics courses. Complex algebra is one of the mathematical tools that is not introduced or used in lower-division physics courses but is pervasive throughout upper-division courses. In this dissertation, I study middle-division physics students' developing fluency with complex number...
Catalase HPII from Escherichia coli, is a mono-functional catalase responsible for preventing the formation of reactive oxygen species in the cell. Its active site is representative of most mono-functional catalases, making it a good model for mechanistic studies. The role of the heme-binding tyrosine was investigated by replacing Tyr415 with...
In recent years, microRNA’s (miRNA’s) have emerged as important in regulating gene expression. Fluctuations in their levels are associated with the up or down-regulation of tumor-suppressor genes and oncogenes. Thus, the ability to visualize changes in miRNA is an important step in understanding cancer emergence and development. The Burrows group...
This thesis explores student understanding of divergence in physics settings. The various uses of divergence in physics are detailed. Textbook approaches to divergence are categorized as geometric, curvilinear coordinate, discussion-based, and algebraic statement. Textbook approaches to the divergence theorem are categorized as geometric, equivalent integrals, mathematical statement with explanation, and...
Metabolic improvements and changes in gene expression were measured in mice fed polyphenol-rich extracts derived from apples and sweet cherries, and the common phytochemicals, quercetin and ellagic acid. Polyphenol-rich extracts were produced by solid phase extraction and column chromatography. Extracts and purified compounds were mixed into a high-fat (HF, 60%...
Clothing is wrought with symbolism. Each day when outfits are selected and worn, messages are being sent and received, categorizing the wearer. The self and the many different roles that it plays in society are important factors in determining a personal appearance. We try to reflect our internal concept of...