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  • Relational Learning over Dirty Data Using Data Constraints

    Creator:
    Lee, Ga Young
    Abstract:
    Real-world datasets are dirty and contain many errors. Examples of these issues are violations of integrity constraints, duplicates, and inconsistencies in representing data values and entities. Applying machine learning on dirty databases may lead to inaccurate results. Users have to spend a lot of time and effort repairing data errors...
    Resource Type:
    Masters Thesis
    Full Text:
    my committee members, Professor Liang Huang, Professor Weng- Keen Wong, and Professor Ren Guo

  • ThreshKnot: Thresholded ProbKnot for Improved RNA Secondary Structure Prediction

    Creator:
    Zhang, Liang
    Abstract:
    RNA structure prediction is a challenging problem, especially with pseudoknots. Recently, there has been a shift from the classical minimum free energy-based methods (MFE) to partition function-based ones that assemble structures based on base-pairing probabilities. Two typical examples of the latter group are the popular maximum expected accuracy (MEA) method...
    Resource Type:
    Masters Thesis
    Full Text:
    AN ABSTRACT OF THE THESIS OF Liang Zhang for the degree of

  • RNA Secondary Structure Prediction Using Neural Machine Translation

    Creator:
    Zhang, Luyao
    Abstract:
    RNA secondary structure prediction maps a RNA sequence to its secondary structure (set of AU, CG, and GU pairs). It is an important problem in computational biology be-cause such structures reveals crucial information about the RNAs function, which is useful in many applications ranging from noncoding RNA detection to folding...
    Resource Type:
    Capstone Project
    Full Text:
    Translation by Luyao Zhang A Project Presented to the FACULTY OF THE

  • Computable Randomness, and Coding the Orbits of the Collatz Map

    Creator:
    Robson, Charlie
    Abstract:
    In this thesis I will look at a definition of computable randomness from Algorithmic Information Theory as defined by Andre Nies through the lens of Computable Analaysis asdefined by Klaus Weihrauch. I will show that despite the fact that these two paradigmsgenerate distinct classes of computable supermartingales, the class of...
    Resource Type:
    Dissertation
    Full Text:
    , and Coding the Orbits of the Collatz Map Abstract approved: Ren Guo In this thesis I will look at a

  • International Trade of Fishery Products and Co-operation Opportunities in Chinese Fisheries

    Creator:
    Zhang, Xiang-guo
    Abstract:
    China is a large developing country with 1.28 billion of population, per capita’s income is continually increasing; the population is also increasing, so that the demand for human eatable consumption of fishery products is increasing significantly. During 1995 to 2001, the average annually increasing rate of per capita’s GDP was...
    Resource Type:
    Research Paper
    Full Text:
    Xiang-guo Zhang , Shanghai Fisheries University, xgzhang@shfu.edu.cn . ABSTRACT China is a large

  • The impact of the number of kinetochore microtubules on the rate of chromosome segregation

    Creator:
    Duan, Yunhan
    Abstract:
    Successful cell division requires proper chromosome movement, including accurate congression to the metaphase plate and proper segregation to spindle poles. Errors that occur in either event can cause chromosome aneuploidy in daughter cells, which may lead to cell death, genetic diseases and cancers (Matson and Stukenberg,2012, Compton, 2000). The force...
    Resource Type:
    Masters Thesis
    Full Text:
    : ______________________________________________________ Dahong Zhang Abstract Successful cell division requires proper chromosome

  • High torque density cycloid electrical machine for robotic application

    Creator:
    Liu, Rui
    Abstract:
    This thesis investigates a novel cycloid electric machine that integrates both cycloid gear drive and permanent magnet synchronous machine (PMSM), and proposes to apply the machine in robotic transmission system. Cycloid gear drive is a transmission device that is commonly used to boost up the output torque. It has been...
    Resource Type:
    Masters Thesis
    Full Text:
    : Julia Zhang This thesis investigates a novel cycloid electric machine that integrates both cycloid

  • Fluid flow on interacting, deformable surfaces

    Creator:
    Neill, Patrick
    Abstract:
    Fluid simulation is an interesting research problem with a wide range of applications including mechanical engineering, special effects in movies and games, and scientific simulation. Due to the complex nature of typical fluid flow equations, there are circumstances where a full volumetric fluid simulation may not be necessary to generate...
    Resource Type:
    Masters Thesis
    Full Text:
    , Deformable Surfaces Abstract approved: Eugene Zhang Fluid simulation is an interesting research problem

  • Tensor Field Design and Analysis for Applications in Computer Graphics and Scientific Visualization

    Creator:
    Palacios, Jonathan
    Abstract:
    Many applications in computer graphics and geometry processing rely on the ability to locally orient 2D and 3D entities on a surface, or inside a volume, such as the sinusoidal kernels in Gabor noise, the color and geometry textures in pattern synthesis, and the finite elements in remeshing. In these...
    Resource Type:
    Dissertation
    Full Text:
    approved: Eugene Zhang Many applications in computer graphics and geometry processing rely on the ability

  • Linear-time Algorithms for RNA Folding: Partition Function, Stochastic Sampling and RNA-RNA Interaction

    Creator:
    Zhang, He
    Abstract:
    RNAs play important roles in the central dogma of molecular biology, and are involved in multiple biology processes such as chromatin modification, transcriptional interference and translation initiation. The functions of RNAs, especially non-coding RNAs, are highly related to its secondary structures, therefore computational methods for RNA structure prediction are of...
    Resource Type:
    Dissertation
    Full Text:
    , helping me finish my PhD study. I would like to thank my teammates in Oregon State, Liang Zhang, Sizhen