Dataset
 

Supplemental data to "Estimating the Genetic Diversity of Pacific salmon and trout using Multi-gene eDNA Metabarcoding"

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https://ir.library.oregonstate.edu/concern/datasets/mp48sm28w

Descriptions

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Creator
Abstract
  • This dataset contains DNA sequence data of Oncorhynchus species, isolated from environmental DNA (eDNA) from Pacific Northwest streams via microfluidic eDNA metabarcoding and high-throughput (Ilummina) sequencing (samples collected from 2017-09-22 to 2017-10-10). It is accompanied by scripts and commands for data analyses including: sequence denoising, calculation of entropy values by codon position, and calculation of diversity statistics and haplotype mapping. Intermediate outputs include denoised haplotypes, entropy calculations, and haplotype summaries following chimera removal.
  • Keywords: Environmental monitoring, species diversity, DNA, freshwater biodiversity conservation, stream health, environmental DNA, metabarcoding, genetic diversity, oncorhynchus, biodiversity, aquatic community
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Resource Type
DOI
Date Collected
Date Issued
Citation
  • Weitemier, K. (2020) Supplemental data to "Estimating the Genetic Diversity of Pacific salmon and trout using Multi-gene eDNA Metabarcoding" (Version 1) [Data set]. Oregon State University. https://doi.org/10.7267/9wg8-f298
Academic Affiliation
Subject
Urheberrechts-Erklärung
Related Items
  • Sequence data stored in NCBI, project number PRJNA641714 (embargoed until publication of manuscript)
Funding Statement (additional comments about funding)
  • Financial support was provided by the US Forest Service Pacific Northwest Research Station, the Bureau of Land Management, and NCASI.
Publisher
Language
Embargo reason
  • Pending Publication
Embargo date range
  • 2020-07-21 to 2021-01-11

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file details Oncorhynchus_eDNA_Supplemental_Data.zip 2020-08-14 Öffentlich Herunterladen
file details README.txt 2020-11-18 Öffentlich Herunterladen