Analysis of genome sequences from plant pathogenic Rhodococcus reveals genetic novelties in virulence loci Public Deposited

http://ir.library.oregonstate.edu/concern/datasets/qn59q765p

See the related paper, "Creason AL, Vandeputte OM, Savory EA, Davis EW II, Putnam ML, et al. (2014) Analysis of Genome Sequences from Plant Pathogenic Rhodococcus Reveals Genetic Novelties in Virulence Loci. PLoS ONE 9(7): e101996. doi:10.1371/journal.pone.0101996."

Suggested citation: "Creason, Allison L.; Vandeputte, Olivier M.; Savory, Elizabeth A.; Davis II, Edward W.; Putnam, Melodie L.; Hu, Erdong; Swader-Hines, David; Mol, Adeline; Baucher, Marie; Prinsen, Els; Zdanowska, Magdalena; Givan, Scott A.; El Jaziri, Mondher; Loper, Joyce E.; Mahmud, Taifo; Chang, Jeff H. (2014): Analysis of genome sequences from plant pathogenic Rhodococcus reveals genetic novelties in virulence loci. Oregon State University Libraries. Dataset.  http://dx.doi.org/10.7267/N9PN93H8"

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  • We report the sequence and characterization of the genomes of 21 isolates of Rhodococcus. Next generation sequencing technology was used to generate genome sequences. The reads for each genome were de novo assembled. The contigs were re-ordered, using the genome sequence of A44a as a reference. The program, Prokka, was used to automate the annotation of the genome sequences. The genome sequences, genbank files, and nucleotide and amino acid sequences for the predicted coding sequences are provided.
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  • Creason, Allison L.; Vandeputte, Olivier M.; Savory, Elizabeth A.; Davis II, Edward W.; Putnam, Melodie L.; Hu, Erdong; Swader-Hines, David; Mol, Adeline; Baucher, Marie; Prinsen, Els; Zdanowska, Magdalena; Givan, Scott A.; El Jaziri, Mondher; Loper, Joyce E.; Mahmud, Taifo; Chang, Jeff H. (2014): Analysis of genome sequences from plant pathogenic Rhodococcus reveals genetic novelties in virulence loci. Oregon State University Libraries. Dataset. http://dx.doi.org/10.7267/N9PN93H8
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  • description.provenance : Submitted by Amanda Whitmire (amanda.whitmire@oregonstate.edu) on 2014-06-05T17:47:32ZNo. of bitstreams: 2license_rdf: 1089 bytes, checksum: 0a703d871bf062c5fdc7850b1496693b (MD5)placeholder.txt: 224 bytes, checksum: bf2bb61d78831061bb1258faf048e778 (MD5)
  • description.provenance : Approved for entry into archive by Amanda Whitmire(amanda.whitmire@oregonstate.edu) on 2014-06-05T20:25:27Z (GMT) No. of bitstreams: 2license_rdf: 1089 bytes, checksum: 0a703d871bf062c5fdc7850b1496693b (MD5)placeholder.txt: 224 bytes, checksum: bf2bb61d78831061bb1258faf048e778 (MD5)
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