Search Constraints

Start Over
Filtering by: Keyword transcription factor network Remove constraint Keyword: transcription factor network Creator Bredeweg, Erin L. Remove constraint Creator: Bredeweg, Erin L.

Search Results

  • TableS11_gene_differential-expression.txt

    Creator:
    Bredeweg, Erin L. and Freitag, Michael
    Abstract:
    Transcription factor (TF) genes were modified endogenously to include epitope tags for identification of TF protein binding sites by Chromatin Immunoprecipitation (ChIP), followed by high throughput sequencing. We used RNA-sequencing in carbon sources of sucrose, butyrate, and oleate in far-1, far-2, and a double far-1; far-2 mutant to find transcripts...

  • TableS10_MIPS-FAR2-RNAfiltered.xlsx

    Creator:
    Bredeweg, Erin L. and Freitag, Michael
    Abstract:
    Transcription factor (TF) genes were modified endogenously to include epitope tags for identification of TF protein binding sites by Chromatin Immunoprecipitation (ChIP), followed by high throughput sequencing. We used RNA-sequencing in carbon sources of sucrose, butyrate, and oleate in far-1, far-2, and a double far-1; far-2 mutant to find transcripts...
    Full Text:
    NCU01229 NCU02366 26 0.25 2.64 0.0246717228 18.02.03 guanyl-nucleotide exchange factor (GEF) 3 0.33

  • TableS09_MIPS-FAR1-RNAfiltered.xlsx

    Creator:
    Bredeweg, Erin L. and Freitag, Michael
    Abstract:
    Transcription factor (TF) genes were modified endogenously to include epitope tags for identification of TF protein binding sites by Chromatin Immunoprecipitation (ChIP), followed by high throughput sequencing. We used RNA-sequencing in carbon sources of sucrose, butyrate, and oleate in far-1, far-2, and a double far-1; far-2 mutant to find transcripts...
    Full Text:
    NCU03124 NCU04185 49 0.48 2.083333333 0.0276063247 18.02.03 guanyl-nucleotide exchange factor (GEF) 3 0.33

  • TableS08_FAR2-GO_ChIP.xlsx

    Creator:
    Bredeweg, Erin L. and Freitag, Michael
    Abstract:
    Transcription factor (TF) genes were modified endogenously to include epitope tags for identification of TF protein binding sites by Chromatin Immunoprecipitation (ChIP), followed by high throughput sequencing. We used RNA-sequencing in carbon sources of sucrose, butyrate, and oleate in far-1, far-2, and a double far-1; far-2 mutant to find transcripts...
    Full Text:
    guanyl-nucleotide exchange factor (GEF) 3 0.31 NCU08277 NCU06493 NCU06067 9 0.08 3.875 0.0446705935

  • TableS07_FAR1-GO_ChIP.xlsx

    Creator:
    Bredeweg, Erin L. and Freitag, Michael
    Abstract:
    Transcription factor (TF) genes were modified endogenously to include epitope tags for identification of TF protein binding sites by Chromatin Immunoprecipitation (ChIP), followed by high throughput sequencing. We used RNA-sequencing in carbon sources of sucrose, butyrate, and oleate in far-1, far-2, and a double far-1; far-2 mutant to find transcripts...
    Full Text:
    NCU03124 NCU02806 NCU04185 49 0.48 1.979166667 0.0356909659 18.02.03 guanyl-nucleotide exchange factor

  • TableS03_FAR1O_ChIP.xlsx

    Creator:
    Bredeweg, Erin L. and Freitag, Michael
    Abstract:
    Transcription factor (TF) genes were modified endogenously to include epitope tags for identification of TF protein binding sites by Chromatin Immunoprecipitation (ChIP), followed by high throughput sequencing. We used RNA-sequencing in carbon sources of sucrose, butyrate, and oleate in far-1, far-2, and a double far-1; far-2 mutant to find transcripts...
    Full Text:
    sc01 NCU03007 - pre-mRNA-splicing factor slt-11 2 - - - 1 - - 1 342 NCU03006 + ergosterol-4 11 - 1 2 1

  • TableS02_FAR1B_ChIP.xlsx

    Creator:
    Bredeweg, Erin L. and Freitag, Michael
    Abstract:
    Transcription factor (TF) genes were modified endogenously to include epitope tags for identification of TF protein binding sites by Chromatin Immunoprecipitation (ChIP), followed by high throughput sequencing. We used RNA-sequencing in carbon sources of sucrose, butyrate, and oleate in far-1, far-2, and a double far-1; far-2 mutant to find transcripts...
    Full Text:
    ERROR:#N/A ERROR:#N/A -15 NCU09333 + zinc finger transcription factor ace1 1 1 - - - - - - sc06 1284198

  • Metadata_FARs.docx

    Creator:
    Bredeweg, Erin L. and Freitag, Michael
    Abstract:
    Transcription factor (TF) genes were modified endogenously to include epitope tags for identification of TF protein binding sites by Chromatin Immunoprecipitation (ChIP), followed by high throughput sequencing. We used RNA-sequencing in carbon sources of sucrose, butyrate, and oleate in far-1, far-2, and a double far-1; far-2 mutant to find transcripts...

  • TableS06_FAR2O_ChIP.xlsx

    Creator:
    Bredeweg, Erin L. and Freitag, Michael
    Abstract:
    Transcription factor (TF) genes were modified endogenously to include epitope tags for identification of TF protein binding sites by Chromatin Immunoprecipitation (ChIP), followed by high throughput sequencing. We used RNA-sequencing in carbon sources of sucrose, butyrate, and oleate in far-1, far-2, and a double far-1; far-2 mutant to find transcripts...
    Full Text:
    24.93216 2.96E-06 -4001 sc05 NCU04182 + splicing factor 3b subunit 4 7209 NCU04185

  • TableS04_FAR2S_ChIP.xlsx

    Creator:
    Bredeweg, Erin L. and Freitag, Michael
    Abstract:
    Transcription factor (TF) genes were modified endogenously to include epitope tags for identification of TF protein binding sites by Chromatin Immunoprecipitation (ChIP), followed by high throughput sequencing. We used RNA-sequencing in carbon sources of sucrose, butyrate, and oleate in far-1, far-2, and a double far-1; far-2 mutant to find transcripts...

  • TableS05_FAR2B_ChIP.xlsx

    Creator:
    Bredeweg, Erin L. and Freitag, Michael
    Abstract:
    Transcription factor (TF) genes were modified endogenously to include epitope tags for identification of TF protein binding sites by Chromatin Immunoprecipitation (ChIP), followed by high throughput sequencing. We used RNA-sequencing in carbon sources of sucrose, butyrate, and oleate in far-1, far-2, and a double far-1; far-2 mutant to find transcripts...

  • TableS12_genes_fpkm_tracking.txt

    Creator:
    Bredeweg, Erin L. and Freitag, Michael
    Abstract:
    Transcription factor (TF) genes were modified endogenously to include epitope tags for identification of TF protein binding sites by Chromatin Immunoprecipitation (ChIP), followed by high throughput sequencing. We used RNA-sequencing in carbon sources of sucrose, butyrate, and oleate in far-1, far-2, and a double far-1; far-2 mutant to find transcripts...

  • TableS01_FAR1S_ChIP.xlsx

    Creator:
    Bredeweg, Erin L. and Freitag, Michael
    Abstract:
    Transcription factor (TF) genes were modified endogenously to include epitope tags for identification of TF protein binding sites by Chromatin Immunoprecipitation (ChIP), followed by high throughput sequencing. We used RNA-sequencing in carbon sources of sucrose, butyrate, and oleate in far-1, far-2, and a double far-1; far-2 mutant to find transcripts...
    Full Text:
    transcription factor 4 2 - - - - 2 - 3986621 3987053 110.90857 3986440 3987009 79.75443 9.75E-05 sc02 2987365

  • Characterization of Neurospora crassa “Fatty Acid Regulator” transcription factors, FAR-1 and FAR-2, by ChIP- and RNA-sequencing

    Creator:
    Bredeweg, Erin L. and Freitag, Michael
    Abstract:
    Transcription factor (TF) genes were modified endogenously to include epitope tags for identification of TF protein binding sites by Chromatin Immunoprecipitation (ChIP), followed by high throughput sequencing. We used RNA-sequencing in carbon sources of sucrose, butyrate, and oleate in far-1, far-2, and a double far-1; far-2 mutant to find transcripts...
    Resource Type:
    Dataset