Epidermal RNA samples from FVB/N mice treated with PAH standards and
environmental PAH mixtures were harvested and purified using Trizol extraction and
RNeasy mini prep kit purification. Epidermal RNA integrity was low (RIN mean 3.5),
indicating significant RNA degradation and the need to modify handling, collection, and
processing of skin...
Many Gram-negative bacteria use a type III secretion system (TTSS) to establish a relationship with a host. Pathogens can use the secretion system as a way to deliver proteins known as type III effectors (TTEs) into a host cell and block host defense. The variation and redundancy of the type...
This study tested natural products from cyanobacteria from the Red Sea in Egypt and marine tunicates from the Algoa Bay in South Africa. Products from marine organisms have been used as lead compounds for the synthesis of new drugs because of their biological activity mechanism. Specifically, these products may contain...
The western spotted cucumber beetle (Diabrotica undecimpunctata
undecimpunctata) and the western striped cucumber beetle (Acalymma trivittatum) are
pests of many crops, including vegetable, fruit, and nursery crops. Pesticides are
commonly used to control this pest. Trap and kill technologies are under development as
use in an alternative control for cucumber...
HafSOx is a dielectric material that also functions as an insulator. It is able to be spin-coated onto a silicon substrate, creating a thin, amorphous film. It is very dense, which helps lead it to a high dielectric constant, making it ideal for electronic devices through the use of lithography....
OVERVIEW OF INTRODUCTION - This is a combined thesis for both disciplines of BioResource Research (BRR)Interdisciplinary and International Degree (ID) Programs OSU. The first chapter encompasses the BRR research, which is a preliminary study utilizing immunohistochemical method to characterize melanomas in bigenic mice with activated Cdk4 protein and Retinoid-X-Receptor α...
The rate of melanoma among Asian American has been steadily increasing in the past
five years, while in other Asian countries, such as Japan, the incident rate remains relatively the
same. Does the culture and societal attitudes toward skin cancer make a difference in the incident
rate of melanoma? This...
The neutron capture cross sections of ¹⁰⁶Cd, ¹⁰⁸Cd, ¹¹⁰Cd, ¹¹²Cd, ¹¹⁴Cd and ¹¹⁶Cd
were determined in the present project. Four different OSU TRIGA reactor facilities were
used to produce redundancy in the results and to measure the thermal cross section and
resonance integral separately. When the present values were compared...
Understanding the mechanisms through which stem cells self-renew is important for the development of new therapies to repair and restore damaged tissue. This research explores possible mechanisms of telomere mimic action and seeks to validate a new assay for evaluating telomere binding antagonists and studying the effects of telomere binding...
BACKGROUND: Oregon produces 99% of the hazelnuts grown in the United States. The key pest threatening commercial hazelnut orchards in Oregon is Cydia latiferreana (Tortricidae), filbertworm moth (FBW). Currently, most growers control FBW with one to two applications of esfenvalerate (Asana XL), a broad spectrum pyrethroid. Pheromone mating disruption is...
ABSTRACT
Wetlands are considered critically important in the delivery of ecosystem services such as water quality improvement, flood protection, and conservation of native biodiversity. A common measure of the effectiveness of these ecosystem services is denitrification, an anaerobic microbial process that converts nitrate (NO3-), a common water pollutant, into dinitrogen...
The neutron capture cross sections of ¹⁰⁶Cd, ¹⁰⁸Cd, ¹¹⁰Cd, ¹¹²Cd, ¹¹⁴Cd and ¹¹⁶Cd were determined in the present project. Four different OSU TRIGA reactor facilities were used to produce redundancy in the results and to measure the thermal cross section and resonance integral separately. When the present values were compared...
This internship project (Dr. Dawn Wright—Department of Geoscience) was a synthesis of several aspects of the research process. The documentation of methods consisted of: primary data collection of soil samples, geographical coordinates, georeferencing, basemap creation, laboratory machine operation, laboratory methods, laboratory quality control planning, statistical analysis, and geo-statistical analysis using...
2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) is a potent immunosuppressant and a prototypic ligand for the aryl hydrocarbon receptor (AhR). In a graft versus host (GvH) response, treatment with TCDD suppresses a cytotoxic T-lymphocyte (CTL) response by Day 10, concurrent with a T-regulatory (Treg) like phenotype in the donor CD4+ T-cells, observed on Day...
To examine the influence of forest management on wildlife immunity, the innate immune system of wild deer mice (Peromyscus maniculatus) inhabiting forest plots of different management intensities in the Oregon coast range was measured by bactericidal assay. Bactericidal activity was compared across three management levels, including 40-50 year old forest...
High resolution images of a dim companion in a binary star system can be obtained using a Digital Micromirror Array (DMA) as an optical mask. Imaging can be problematic because the intense light from the main star can saturate the detector and leave the companion unnoticed. Placement of the DMA...
Recalcitrance to transformation makes genetic engineering of many valuable plants infeasible for practical use. Transitory host modification during transformation using transgenes offers a possible means of overcoming this obstacle. In prior work in our laboratory, the genes GA20ox7 and EBB1 were found to increase regeneration in vitro. In this project,...
Birds of prey and carnivorous mammals feed on small birds, rodents and other small mammals. Humans perceive many of the prey animals of these predators as well as the predators themselves, as “pests”, and seek to control them. Control methods for these unwanted pests, particularly rodents, have the potential to...
The oilseed crop Limnanthes alba (white meadowfoam) is grown in Oregon. Methods were developed for the production of a liquid-based bioherbicide from meadowfoam seed meal (MSM). It was determined that glucosinolate-containing extracts of MSM can be combined with active-enzyme-containing liquid extracts of meadowfoam seed to form a fermented product rich...
Abstract
Current methods employed in the textile industry are unsustainable because they use an abundance of water in the dying process, and discharge the waste into the environment, causing adverse health effect on aquatic life and local communities. The technology that is in place to remove dye from textile effluents...
The Willamette Valley, west of the Cascade mountain range in the state of Oregon, is home to a growing number of vineyards. This rather recent, booming industry of the region has become an important component of the economy of the state’s agriculture since the late 1960’s, contributing more than $1.56...
An apparatus and method for calibrating planar laser induced fluorescence using a two-dye, two-color method was developed. A laser sheet was expanded from a 473 nm laser to excite dye solutions into higher energy states then fluoresced through spontaneous emission. The two fluorescent dyes selected for research and development were...
Abstract
Haptoglobin is an acute phase protein that is elevated in response to tissue damage and infections in dairy cows. The objectives of this study were to evaluate whether serum haptoglobin concentrations in the first week after calving can indicate disease status and severity, and whether haptoglobin concentrations are elevated...
The Willamette Valley, west of the Cascade mountain range in the state of Oregon, is home to a growing number of vineyards. This rather recent, booming industry of the region has become an important component of the economy of the state’s agriculture since the late 1960’s, contributing more than $1.56...
We examine a discrete-time quantum walk with two-step memory for a particle on a one-
dimensional infinite space. The walk is defined with a four-state memory space analogous to the
two-state coin space commonly used in discrete time quantum walks, and a method is presented
for calculating the time evolution...
It has been observed and documented that Pisaster ochraceus has very striking colors, but the reasons behind the coloration are still unknown. Three coloration categories were determined and used for a feeding trial study to investigate the effects of diet on coloration in Pisaster ochraceus. This study involved 30 hand...
Abstract
Understanding the effects of climate change on forest ecosystems requires exploration of the relationships of different components of the system, such as the response of biota to local hydrology, temperature, precipitation, and elevation. The Long-term Ecological Research Program at the H. J. Andrews Experimental Forest, located in the Western...
New antibiotic compounds with novel mechanisms of action have become essential in response to the recent paradigm of increasingly resistant strains of bacteria. Secondary metabolites (natural products) from bacteria such as Actinobacteria serve as lead compounds for the development of pharmaceutical drugs widely used to fight bacterial, viral and fungal...
This research looks at the demographics, industry, and land use shifts over the past decades in the John Day Region of Eastern Oregon in order to better understand the shifting rural community in the United States. Census data was collected and analyzed to describe the shift. Published literature and interviews...
This thesis presents a measurement of the resonance integral and thermal cross section – which together represent the total neutron absorption cross section – of the naturally occurring isotopes of platinum that emit gamma radiation upon neutron absorption. The measurements were made via neutron activation analysis. Platinum samples were bombarded...
Many studies in recent literature have shown a significant link between the abnormalities of a newly born individual and the type of environment that their mothers encountered during pregnancy. More specifically, over the last two decades, a discipline of research commonly known as “fetal programming” has linked abnormalities at birth...
Motivation
Relatively little is known about the evolution of mitochondrial genomes between Caenorhabditis species despite decades of research. Both the worldwide search for new nematode species and the effort to increase sequencing speeds require automated tools to quickly characterize and categorize large amounts of data.
Results
We developed an automated...
The overall objective of this research was to determine which, if any, myosin XI proteins and exocyst proteins play a role in growth of Arabidopsis thaliana hypocotyls and root hairs. This involved the study of whether exocyst and myosin proteins work together during cell expansion within these two plant parts....
We compiled Western Pond Turtle (Actinemys marmorata) and Painted Turtle (Chrysemys picta) locations in northwestern North America, consolidating data from multiple sources including nine U.S. State and Canadian Provincial jurisdictions. We assessed numbers of discrete locations, and analyzed distribution patterns temporally and spatially. Western Pond Turtle observation records ranged from...
Summary
Recent research has identified Retinoid-X-Receptorα (RXRα), a nuclear receptor involved in ligand mediated transcription, as having a protective function against the malignant transformation of melanocytes after treatment with chemical carcinogens. This study used mice selectively lacking keratinocytic RXRα in combination with an oncogenic mutation, either Cdk4[Superscript R24C/R24C] or N-Ras[Superscript...
Genetic and environmental factors influence individual cancer risk. Mutations in DNA mismatch repair (MMR) genes increase colon cancer risk. Exposure to carcinogens, including the ubiquitous polycyclic aromatic hydrocarbons (PAHs), also is associated with increased cancer risk. To understand the combined effects of both environmental exposures and genetic risk, we investigated...
Parathyroid hormone (PTH) is directly involved in breast cancer (BC) metastasis, as well as the severity of metastatic tumors. Excess PTH, caused by insufficient dietary calcium, may be an important and preventable factor affecting BC metastasis to bone. PTH levels increase with age in most women, largely due to insufficient...
Farensoid X Receptor (FXR) is a very flavoring protein for the treatment and prevention of the many conditions related to metabolic syndrome. Our experiment explores the binding activities of FXR when introduced to various natural and synthetic ligands. Currently, an initial assay showing the Stern-Volmer relationship of our date supports...
We found that a strains of Yersinia pestis (KIM5) which lacked the nhaA gene was fully attenuated in a plague model. This gene produces a protein of the sodium-proton antiporter family which expel sodium ions from the bacterial cytoplasm in exchange for hydrogen ions, or protons, from the surrounding environment....
Adequate energy stores are essential for animal survival, and sophisticated neuroendocrine mechanisms evolved to stimulate foraging in response to nutrient deprivation. Food search behavior is usually investigated in young animals, and it is not known how aging alters this behavior. To address this question in Drosophila, we compared the ability...
Some studies have found that responses are faster when the orientation of an object’s graspable part corresponds with the response location than when it does not (i.e., the object-based correspondence effect). We examined Goslin et al.’s (2012) claim that the effect is the result of object-based attention (visual-action binding). As...
Most animals are active either during the day, night, or twilight, and transition periods between these times exhibit interesting behavior. Actions may be related to avoiding predators, seeking shelter, defending territory, feeding, or other interests. Herbivorous fishes on coral reefs, such as parrotfishes, forage constantly throughout daylight periods due to...
Toxicological studies show that oral doses of nickel can cause allergic contact dermatitis, and routes of exposure, such as nickel leached from stainless steel cookware are not well characterized. In this study, four variables: grade of stainless steel, cook time, stainless steel seasoning or cooking cycles, and commercial tomato sauces,...
Crime rates affect everything from home values, to the quality of education. Through the use of Social Disorganization Theory this paper will support the hypothesis that there is a correlation between neighborhood upkeep and crime rates within neighborhoods. Social Disorganization theory itself aims to show the correlation between the place...
Optical trapping is a tool used throughout a wide variety of disciplines rang- ing from precisely probing and manipulating sub-micron organisms in biol- ogy to analyzing fundamental charge transfer in colloidal physics. This thesis presents research involving optical tweezer force measurements of polystyrene and silica microspheres. In addition, preliminary work...
A project to restore and increase the native riparian habitat on a 1½ acre site along Oak Creek will begin in spring 2013. In order to carry out long-term monitoring and evaluation of the efficacy of the restoration effort, it is necessary to know what is growing there now. To...
Cancer economic impact is enormous and depending on the stage in which a colon cancer
is detected, five-year survival rates for colon cancer may be as high as 74%, or as low as
6% (American Cancer Society, 2012). Thus early prevention of colon cancer is crucial to
maximize the chances...