Data, pedigrees, reports and manuscripts herein are from an investigation conducted with coho salmon of the Umpqua River in southern Oregon from 2001-2009. They relate to a study investigating several areas of uncertainty about the use of salmon hatcheries to increase the abundance of wild populations. At that time, there...
Little is known about the role that worms played in the lives of modern Europeans. This research strove to combine a multitude of primary sources to shape a cohesive depiction of the role of parasitic worms in modern Europe 1700-1800. The Scientific Revolution played a key role in changing the...
This bibliographic database contains all master’s theses completed by students within OSU’s Counseling Academic Unit. This listing includes all theses for the MS, MA, and EdM degrees.
The title for the major in counseling during the time period of this database was Education. Counseling students with this Education major also...
The application of DNA based markers towards the task of discriminating among alternate salmon runs has evolved in accord with ongoing genomic developments and increasingly enabled resolution of which genetic markers associate with important life history differences. Accurate and efficient identification of the most likely origin for salmon encountered during...
Transcription factor (TF) genes were modified endogenously to include epitope tags for identification of TF protein binding sites by Chromatin Immunoprecipitation (ChIP), followed by high throughput sequencing. We used RNA-sequencing in carbon sources of sucrose, butyrate, and oleate in far-1, far-2, and a double far-1; far-2 mutant to find transcripts...
Matlab code is included for detecting and tracking acoustic scattering layers from processed Echoview data. Acoustic scattering layers are ubiquitous, horizontally extensive aggregations of both vertebrate and invertebrate organisms that play key roles in oceanic ecosystems. However, currently there are no conventions or widely adaptable automatic methods for identifying these...
Background: Triticum monococcum (2n) is a close ancestor of T. urartu, the A-genome progenitor of cultivated hexaploid wheat, and is therefore a useful model for the study of components regulating photomorphogenesis in diploid wheat. In order to develop genetic and genomic resources for such a study, we constructed genome-wide transcriptomes...
A final report on activities related to a professional development activity titled, "Professional development in data curation". The Lundeen Award enabled me to attend the ICPSR workshop "Curating and Managing Research Data for Re-Use." The objective was to build professional capacity within OSUL&P that would empower us to achieve our...
We re-sequenced the Pseudoperonospora cubensis transcriptome to provide the first extensive transcriptome-wide survey of alternative splicing in an obligate biotrophic pathogen during host infection. The libraries from biological replicates of cucumber leaves infected with Ps. cubensis for 2, 3, 4, and 8 days post inoculation (dpi) were re-sequenced using 100-mer...
We report the sequence and characterization of the genomes of 21 isolates of Rhodococcus. Next generation sequencing technology was used to generate genome sequences. The reads for each genome were de novo assembled. The contigs were re-ordered, using the genome sequence of A44a as a reference. The program, Prokka, was...
We monitored a suite of stream chemistry parameters for April and May, 2013, at Oak Creek, Oregon, USA. The dataset can be downloaded at the following URL: http://dx.doi.org/10.7267/N9JW8BSJ, via the Dataset Query Tool. The dataset is hosted by The Oregon Hydrologic Information Server (OHIS), which is an on-line database repository...
Long-distance exchange has long been recognized as a critical factor in the history of the ancient Near East, yet few studies have utilized robust analytical methods to trace the production and movement of specific goods at the interregional scale. Mundane goods such as pottery are particularly under-studied, and owing to...
The data represent 48-state USA weather and climate data (both site and gridded), biological phenology (developmental) models, combined with photoperiod response (diapause inducing sensitivity to short daylengths). The example data sets are specific to a single insect biological control organism (a leaf beetle introduced to control purple loosestrife, an invasive...
36 strains of Burkholderia spp. isolated from sugarcane were evaluated for biological control of leaf and pseudobulb necrosis of orchid caused by B. gladioli. 29 of the sugarcane strains suppressed the disease in greenhouse assays. We generated a draft genomic sequence of one suppressive strain, B. seminalis TC3.4.2R3. The genome...
Research data has gained wider acceptance as important scholarly products in and of themselves, and funding agencies, such as the National Science Foundation (NSF), have introduced requirements for Data Management Plans (DMPs) and data archiving. Accordingly, academic and research libraries are devoting significant consideration, effort, and resources toward expanding their...
Here, we describe and demonstrate a geographic information systems-based lithic morphometric research (GLiMR) software approach. GLiMR accurately and rapidly handles a sequence of ArcGIS procedures to extract geometric morphometric data from 2D and 3D scan files of lithic artifacts. GLiMR generates three main types of geometric properties: shape data, topographic...
This dataset includes comma-separated text files with tabular data from survey responses and the R code used to visualize them. The following abstract describes the research study. See the README file for a more thorough description of the data. Purpose: The purpose of this case study is to demonstrate how...
We computed band gaps of amorphous oxides within the In-Ga-Zn triad. These included ZnO, Ga2O3, In2O3, Ga2ZnO4, Ga2Zn8O11, In2ZnO4, InGaZnO4, and InGaO3. Comparing the computed band gap to experimental measurements, the results were promising with a mean unsigned error of 0.28 eV and an unsigned standard deviation of 0.28 eV....
Crystal-rich (40~50 vol.%) intermediate lava has been the primary eruptive product of several recent hazardous eruptions: Mt. Pinatubo, Philippines (1991), Soufriere Hills, Montserrat (1995-present), and Unzen, Japan (1990-1995). Despite this association with such devastating eruptions, the formation, timing, and evacuation of such magma is not well understood: do such eruptions...
These slides were presented at a 1.5 day workshop on research data management and curation for the Northwest Five Consortium (NW5C). The NW5C is composed of Willamette University, Whitman College, University of Puget Sound, Reed College, and Lewis and Clark College. The mission of the NW5C is to enhance the...
This is the data set used for the analysis in the paper "Dams and Population Displacement on China’s Upper Mekong River: Implications for Social Capital and Social-Ecological Resilience." In 2010, in collaboration with Chinese colleagues, we administered a household survey questionnaire to 729 households in more than 30 villages across...
We present a methodology for creating a simulated foam microstructure for use in forward simulations of wave equations to quantitatively analyze the expected scattering phenomenon primarily responsible for the attenuation of interrogating signals in Sprayed-On Foam Insulation (SOFI). Our approach builds off of the popular use of Voronoi Tessalations for...
Continuous integration (CI) systems automate the compilation, building, and testing of software. Despite CI rising as a big success story in automated software engineering, it has received almost no attention from the research community. For example, how widely is CI used in practice, and what are some costs and benefits...
In the Pacific Northwest, USA, the extraordinarily low snowpacks of winters 2013–2014 and 2014– 2015 stressed regional water resources and the social environmental system. We introduce two new approaches to better understand how seasonal snow water storage during these two winters would compare to snow water storage under warmer climate...
1.) We investigated the potential of cross-scale interactions to affect the outcome of density reduction in a large-scale silvicultural experiment to better understand options for managing forests under climate change.
2.) We measured tree growth and intrinsic water-use efficiency (iWUE) based on stable carbon isotopes (d13C) to investigate impacts of...
We characterized wildfire transmission and exposure within a matrix of large land tenures (federal, state, and private) surrounding 56 communities within a 3.3 million ha fire prone region of central Oregon US. Wildfire simulation and network analysis were used to quantify the exchange of fire among land tenures and communities...
In this dataset we present the environmental effect of solar panels. We had two weather stations, one in a control area and one in an area with solar panels. The weather stations collected wind speed, temperature, solar radiation and relative humidity. We also measured soil moisture in different shaded zones...
Photo voltaic solar energy is a clean source of energy with much lower carbon footprint than other sources. However, the vast land requirements of solar energy arrays may make installation impractical when available land is better suited for other purposes. The goal of this research was to investigate changes to...
This study seeks to address the following questions: What are the research practices and needs of graduate students? How can new library services and features reduce the gap between graduate student needs and current IR services and features? Semi-structured qualitative interviews were conducted with eight graduate students from different disciplines....
The dataset contains three loblolly pines (Pinus taeda Lindl.) stems reconstructed with terrestrial photogrammetric techniques. The trees were growing in west-central Louisiana, Vernon parish. The reconstructed models reached over 50% of the relative height, the proportion of the stem, on which the majority of the merchantable volume is located. After...
The Integrated Landscape Assessment Project (ILAP) was a multi-year effort to produce information, maps, and models to help land managers, policy-makers, and others conduct mid- to broad-scale (e.g., watersheds to states and larger areas) prioritization of land management actions, perform landscape assessments, and estimate cumulative effects of management actions for...
There is a lack of fundamental knowledge about the role which adhesive flow and infiltration plays in the micro-mechanical performance of wood adhesive bonds. This data set, for the first time, provides a way to study directly the relationship between adhesive flow and the micro-mechanics of wood adhesive bonds.
Specimens...
Small, single-point load cells were used to measure force exerted by the first leaf of three hard red cultivars (Farnum, Finley, and Norwest 553) as it emerged from a deep planting depth in a small containerized volume of soil. Coleoptile diameter was determined using a 0 to 25 mm, ratchet-stop...
The research question address in this study is, “To what extent will the use of hands-on activities for introducing concepts in bioinformatics promote student engagement in after-school STEM club settings?” It is hypothesized that high school students' engagement in hands-on bioinformatics activities promotes their awareness of, and interest in, STEM...
Background. Ampelisca eschrichtii Krøyer, 1842 of the Sakhalin Shelf of the Okhotsk Sea, Far Eastern Russia, comprise the highest known biomass concentration of any amphipod population in the world and are a critically important prey source for western gray whales. Growth and reproduction in this population has not been apparent...
Floating guidance structures are intended to promote safe in-stream passage for juvenile salmon migrating downstream through reservoirs. However, the ability of an engineered structure to guide fish to safe passage has been primarily tested either after large-scale implementation in existing reservoirs or in laboratory studies and computer simulations without live...
These datasets document observations of pronghorn crossing structures in the Greater Yellowstone Ecosystem between 2011 and 2014. These datasets include information about the probability of pronghorn crossing the structures and their behaviors around the structures themselves (e.g., sustained vigilance, stress).
Snowpack impacts and trends in precipitation regimes are investigated for the mountainous western United States from water years 1984–2016. The vast majority of snow trend studies utilize undifferentiated air temperature records, which do not segregate between days with and without precipitation and effectually dilute temperature trends relevant for snowpack monitoring....
The Willamette Valley (Oregon) Prairie Plant Trait Dataset is a compilation of plant traits of species important in upland prairies, wetland prairies, vernal pools, and emergent wetlands, and in the restoration of prairies and wetlands of the Willamette Valley of Oregon. These species are also found widely throughout the Pacific...