Mycobacterium avium is an intracellular pathogen that is associated with disseminated
infection, especially in patients with acquired immunodeficiency syndrome (AIDS). It
appears that patients with AIDS acquire M. avium mostly through the intestinal tract,
and that bacteria enter the intestinal wall at the terminal ileum. Previous studies have
found that...
In this study we present new information on seasonal variation in absolute growth rate in length of coho salmon (Oncorhynchus kisutch) in the ocean off Oregon and Washington, and relate these changes in growth rate to concurrent changes in the spacing of scale circuli. Average spacing of scale circuli and...
Radiotelemetry was used to study the seasonal movements and habitat use of adult westslope cutthroat trout Oncorhynchus clarki lewisi in Roberts
Creek and Rail Creek, headwater tributaries of the John Day River, Oregon,
from September 2000 to December 2001. The objectives were to (1)
describe adult cutthroat trout life history...
The Calapooia River, a major tributary of the Willamette River in western Oregon, is a watershed typical of many found in the Willamette Basin. Public and private forested lands occur in the steep Upper Zone of the watershed, mixed forest and agriculture lands are found in the Middle Zone, and...
Female calanoid copepods of the family Calanidae can mature with either the juvenile and most typical female pattern of setation, termed trithek (T), or with the male pattern, termed quadrithek (Q). It was suggested by Fleminger (1985), but not proved, that females with the Q pattern have switched from development...
Sediment storage in and release from the Granite Creek catchment over Holocene timescales is modulated by the fluctuations of Tana Glacier, which periodically blocks the outlet of Granite Creek. Little Ice Age expansion from 1500-1900 AD is suggested by lichenometric ages of alpine glacial moraines within Granite Creek valley. Trimlines...
A genetic selection study to determine the effects on egg hatchability and subsequent chick performance of Japanese quail (Coturnix japonica) eggs incubated at 100 F dry bulb temperature (Control, Line C) when compared to other eggs incubated at 102 F (Selected, Line S) was conducted over 10 consecutive generations. Eggs...
This thesis consists of three papers which investigate marginal models, nonparametric approaches, generalized mixed effects models and variance components estimation in longitudinal data analysis. In the first paper, a new marginal approach is introduced for high-dimensional cell-cycle microarray data with no replicates. There are two kinds of correlation for cell-cycle...
Four-stranded DNA junctions (also known as Holliday junctions) are structural intermediates involved in a growing number of biological processes including DNA repair, genetic recombination, and viral integration. Although previous studies have focused on understanding the conformational variability and sequence-dependent formation of Holliday junctions in solution there have been relatively few...
The effect of serial (multiple-year) organic matter (OM) amendment on soil properties has been described in some cropping systems, although less is known about the effect of serially amended field soils on soil-borne plant diseases. The objectives of this study were to describe the effects of the third and fourth...
In many western North American forests, prescribed burning and mechanical thinning are widely used to reduce
fuels and restore stand conditions after a century of fire suppression. Few studies have followed the relative impacts
of these treatments on the production and consumption of truffles in forest ecosystems, particularly in the...
In many western North American forests, prescribed burning and mechanical thinning are widely used to reduce
fuels and restore stand conditions after a century of fire suppression. Few studies have followed the relative impacts
of these treatments on the production and consumption of truffles in forest ecosystems, particularly in the...
Crown gall disease is an agricultural problem caused by the soil-borne bacterium, Agrobacterium tumefaciens. A. tumefaciens oncogenes cause transformed plant cells to overproduce the hormones, auxin and cytokinin. High hormone levels cause unorganized plant cell growth resulting in a gall. Control of crown gall disease is difficult because after plant...
Most administrators and ecologists agree that reducing the levels of hazardous fuels on forests is essential to restore healthy
watersheds and protect adjacent human communities. The current debate over the appropriateness, technique, and timing of treatments
utilized to restore vegetation structure and composition is currently on-going at local, state, and...
Sawmills are very complex systems that involve many manufacturing processes. The variability of their raw material adds further to this complexity as each log has characteristics that determine its processing path. Therefore, computer simulation is a very useful technique for analyzing sawmill performance. This thesis describes a simulation computer model...
Ice-ocean heat exchange in polar leads was examined using a large-eddy simulation
model coupled to a slab ice model. Simulations were performed using an idealized square
domain for a range of lead sizes, surface wind stress (0.05–0.1 N/m²), and lead
temperature/salinity profiles. Particular emphasis was placed on understanding the role...
Small broomrape (Orobanche minor) is a parasitic weed that attaches to the roots of red clover (Trifolium pratense). Small broomrape invasion presents a significant threat to the future of red clover seed production in Oregon. This study was conducted to investigate and develop small broomrape management options for red clover...
Small broomrape (Orobanche minor Sm.) is a parasitic weed that recently has become troublesome in red clover seed production in Oregon. It was identified
in a single red clover seed production field in 1998, and the number of infestations increased to 15 by 2000 and 22 by 2001.
Changes in snow’s influence on surface ground temperature (SGT) could create a bias
in the borehole temperature record of climate change. Using a snow-ground thermal model
which predicts changes in the mean annual offset between SGT and surface air
temperature (SAT), we calculate the response of SGT to changes in...
A theoretical argument is presented to suggest that engineering curriculum be
designed to develop social capital. Additionally, the value of social capital in the
retention of students in the College of Engineering, and the development, role, and value
of social capital in an electrical engineering laboratory is evaluated. Data collected...
The Teakettle Ecosystem Experiment in the southern Sierra Nevada is using thinning and prescribed
fire to recreate historical stand conditions. As part of Teakettle we assessed pretreatment diversity and density
of the soil arthropod community in 1998 and 2000. We determined the density and diversity of soil microarthropods
among treatment...
Soil response and function were investigated following the adoption of an integrated reduced-tillage and cover-cropped vegetable system in the Willamette Valley of Western Oregon. The experiment was conducted over three cropping seasons (2002-2004) at the Oregon State University Vegetable Research Farm (Corvallis, OR). The design was a randomized complete-block with...
The effects of management on soil carbon efflux in different ecosystems are still largely unknown yet crucial to both our understanding and management of global carbon flux. To compare the effects of common forest management practices on soil carbon cycling, we measured soil respiration rate (SRR) in a mixed-conifer and...
In some practical systems, most of the errors are of 1 → 0 type and 0 → 1
errors occur very rarely. In this thesis, first, the capacity of the asymmetric
channel is derived. The capacity of the binary symmetric channel (BSC) and the
Z-channel can be derived from this...
Farmlands, grasslands, and savannas in semi-arid sub-Sahelian Africa have the potential to store
carbon (C) in soil. There is a great need to manage ecosystems to increase C storage in semipermanent
soil pools. This will improve soil quality, impede desertification and by reducing
atmospheric CO₂ levels, will slow climate change....
This dissertation was undertaken to improve the understanding of the population dynamics of the Pacific Golden chanterelle, Cantharellus formosus. It addresses the longevity of individuals over a 12 year period and the limits of gene flow within the area of a 6,400 hectare watershed at the H.J. Andrews Long Term...
Spatial Supervised Learning seeks to learn how to assign a label to each pixel in a spatial grid
such as the pixels of remote-sensed images. The standard approach is to treat each grid cell
separately and to use only the measured features of the grid cell to determine the assigned...
Dramatic changes in the physical and biological conditions off Washington and Oregon, USA, have occurred since 1998, including extreme El Niño (warm) and La Niña (cool) years, high and low Columbia River flow years, a major intrusion of subarctic water, and a low oxygen event on the shelf. The occurrence...
In many areas of engineering and applied mathematics, spectral methods provide very powerful tools for solving and analyzing problems. For instance, large to extremely large sizes of numbers can efficiently be multiplied by using discrete Fourier transform and convolution property. Such computations are needed when computing π to millions of...
Oregon Natural Heritage Information Center Report.
Sphagnum fens on the coast of Oregon are unique globally and contain a variety of rare plants and animals found nowhere else in the landscape. Evidence indicates that in the absence of disturbance, many open fens have converted to tall shrub and forest stands...
The next generation of nuclear safety analysis computer codes will require detailed
modeling of two-phase fluid flow. The most complete and fundamental model used for
these calculations is known as the two-fluid model. It is the most accurate of the two-phase
models since it considers each phase independently and links...
Fire suppression has significantly increased canopy cover, litter depth, and stem density in many
western forests, altering microsite conditions that affect tree seedling establishment. We conducted studies in a
mixed-conifer forest in the Sierra Nevada, California, to determine relationships between established understory
trees and microsite quality, and to examine the...
As researchers, policymakers and employers begin focusing
on consumer driven health plan models and medical savings
accounts (MSAs), a better understanding of the political
viability of such reform initiatives is necessary. The
purpose of this study was to survey state legislators'
knowledge and perceptions of medical savings accounts
(MSAs) and...
The purpose of this study was to examine one case of embezzlement at one community college in order to assess the sociological effects of the embezzlement on that college. The research design for this study was qualitative using a case study approach. Although there was no attempt to generalize the...
This thesis is an investigation of the natural products deriving from marine algae and cyanobacteria and has resulted in the discovery of eleven new secondary metabolites. The structure elucidations of these new molecules were performed using a variety of spectroscopic techniques. Four new macrolides were isolated and characterized from the...
In recent years, the methyl erythritol phosphate (MEP) pathway to isoprenoids has been the subject of intensive research. The interest is because isoprenoids have important roles in many cellular processes essential for the survival of several pathogenic organisms, making the inhibition of this pathway an attractive target for the drug...
Golden paintbrush (Castilleja levisecta Greenman) historically inhabited the prairies of the Willamette Valley, Oregon. However, this Pacific Northwest endemic is currently restricted to eleven sites in the Puget Trough of Washington and British Columbia. Recovery criteria call for the establishment of new populations throughout the species historic range, including the...
Studies towards the total synthesis of (-)-gymnodimine (1), a marine neurotoxin with a unique molecular architecture and pronounced biological activity, are described. These studies resulted in a convergent approach to the advanced intermediate 315, containing the C3-C32 section of 1. Two synthetic routes were developed to construct the tetrahydrofuran subunit...
Controlling a virtual character with a pen input device is difficult. Pen input
devices require freeform gestures and users are not confined to particular mapping of a
key or a button that is exactly repeatable. This is a problem since an intuitive motion
gesture for one user might not be...
Consists of 12 PowerPoint presentations created for a course in subject analysis taught at Charles University, Prague, in 2005. Topics covered include subject heading construction, classification, shelf listing, and subject authority work, with emphasis on Library of Congress Subject Headings and Library of Congress Classification.
We discuss connections between inner‐shelf and mid‐shelf circulation near Point Conception, California, as well as the wind forcing of inner‐shelf circulation. Point Conception marks the southern edge of a major upwelling zone that extends from Oregon to central California. The coastline makes a sharp eastward turn at Point Conception, and...
Within A rtemisia tridentata ssp. wyomingensis Nutt. (Wyoming big sagebrush)
communities of the Great Basin, lands dominated by the exotic annual grass Bromus
tectorum L. (cheatgrass) are increasing at an alarming rate. Carbon applications, which
reduce plant-available soil N, have been suggested as a way to give native vegetation a...
Symmetric key block ciphers, such as AES, are well known and frequently used. There are five confidentiality modes of operation that are currently recommended for use with a symmetric key block cipher algorithm: Electronic Codebook (ECB), Cipher Block Chaining (CBC), Cipher Feedback (CFB), Output Feedback (OFB), and Counter (CTR). This...
New transparent p- and n-type semiconductors and luminescent materials have been prepared and characterized. Synthesis, structures, optical and electrical properties of new chalcogenide fluoride p-type transparent semiconductors MCuQF (M=Ba, Sr; Q=S, Se, Te) are described. Band-gap tuning and improvement in conductivity through p-type doping are demonstrated in the family. The...
A convergent synthesis of epothilone B that generates all seven of its
asymmetric centers in a completely stereoselective fashion has been
completed. Key reactions include an anti-Felkin aldol condensation to
set the C6 and C7 stereochemistry, a directed α-hydroxylation to install
the C15 (S)-hydroxyl substituent, and a Wittig condensation to...
Cordyceps is a genus of perithecial ascomycetes. It includes over 400 species
that are pathogens of arthropods and parasites of the truffle genus Elaphomyces. Based
on the morphology of cylindrical asci, thickened ascus apices and filiform ascospores,
it is classified in the Clavicipitaceae (Hypocreales), which also includes endophytes
and epiphytes...
Monophyly of the gomphoid-phalloid clade was confirmed based on multigene phylogenetic analyses. Four major subclades (Hysterangiales, Geastrales, Gomphales and Phallales) were also demonstrated to be monophyletic. The interrelationships among the subclades were, however, not resolved, and alternative topologies could not be rejected statistically. Nonetheless, most analyses showed that the Hysterangiales...
Tall fescue is grown for turf or forage seed on a broad range of soils in western Oregon. Typical seed yield is 1,200 to 2,000 lb/acre. Higher yields do not require additional nutrients beyond amounts recommended in this guide. These recommendations, especially for nitrogen, are adequate for production of more...
Many economic development methods over the years have tried to solve the problem of poverty with varied success. Microenterprise development is a method that works with the poor to create small self-run businesses to increase their income, and therefore bring more freedom from disease illiteracy and discrimination. Within microenterprise development...
At George Washington University, librarians and faculty have partnered to provide an effective introduction to information literacy to all freshmen. The structure of the new writing program promotes goals that are at the intersection of the Council of Writing Program Administrators and Association of College and Research Libraries. Furthermore, the...
The purpose of this research was to hear the stories of Northern Cheyenne women's educational experiences using the method of testimonio, a method culturally aligned and academically appropriate for use among indigenous people. The researcher, also a Northern Cheyenne tribal member used testimonio based on its roots in resistance literature...
Barley is the fourth most important cereal crop in the world because of its broad adaptation, its utility as a feedstock and for human food, and the superior properties of barley malt for brewing. Three of the most important foliar diseases of barley, on a worldwide level are: barley leaf...
Resistance to acetohydroxyacid synthase (AHAS)-inhibiting herbicides has been reported in over 90 weedy species, including wild sunflower biotypes, since the herbicides were developed in 1982. The AHAS gene family in sunflower, consisting of three paralogs AHAS1 , AHAS2, and AHAS3, has been targeted for inducing herbicide resistance. A polymorphism identified...
The purpose of this document is to display a portion of the work I have completed over the last two years. The Athlete is the recently written opening to a novel of the same name. I've decided not to excerpt a longer section of the novel because the novel isn't...
This narrative details the evolution of a collaborative teaching project into an educational Website about Bibliotherapy, which is the process of facilitating personal development or problem resolution through books. Working with a Counselor Education colleague, the Education librarian at Oregon State University helped develop a tool to evaluate books for...
Plantago ovata Forssk. (Plantaginaceae) is a winter annual species which, in North America, inhabits desert and Mediterranean habitats of the southwest United States, northwest Mexico and the Channel Islands of California and Mexico. In the eastern hemisphere P. ovata inhabits desert regions ranging from the Canary Islands, across northern Africa...
This thesis explores how and why the concept of disability is included in, or excluded from, the curricula of graduate programs that specialize in international exchange and/or study abroad. Five graduate programs in the United States participated in this study. Data was collected from program websites and through interviews with...
This research explores the consequences and effects for men
enrolled in introductory Women Studies courses at Oregon State
University. Men are enrolling in the feminist classroom in larger
numbers due to institutional changes allowing Women Studies to
provide credit for baccalaureate core curriculum. The intention of
this study is to...
Two research questions are posed: (1) How have ecosystem conditions changed through time in southwestern Oregon? (2) How have culture-driven and climate-driven processes contributed to ecosystem change in southwestern Oregon? A brief introduction to the Little River study area is followed by a cultural and ecological history of the watershed....
An atmospheric stationary wave teleconnection mechanism is proposed to explain how ENSO may affect the Tibetan Plateau snow depth and thereby the south Asian monsoons. Using statistical analysis, the short available record of satellite estimates of snow depth, and ray tracing, it is shown that wintertime ENSO conditions in the...
Key parts of the lateral force resisting system in wood-frame buildings
are the shearwafls and the connections. The connections in wooden buildings
are the primary source of ductility and energy dissipation; these are essential
properties when buildings are exposed to lateral forces, such as wind and
earthquakes. Shearwall design is...
According to Block (1999), the greatest problem with inclusion in physical education is the lack of personnel support. Most help comes in the form of teacher assistants such as peer-tutors and paraprofessional who receive very little, if any, direction from the general physical education teacher. However, what remains unknown are...
The objectives of the experiment were to: 1) determine the relationship
between overstory canopy cover and ungulate herbivory on understory production
composition and diversity and 2) determine the effects of timber harvest, ungulate
herbivory and season of use on botanical composition and nutritional quality of
beef cattle diets. Three randomly...
Fuel reduction treatments are being applied to public lands, affecting significant acreage at considerable expense. This study compares the short term effects on a chaparral plant community of two different fuel reduction methods, brush mastication and "hand piling and burning" (HPB). Ceanothus cuneatus dominated the southwestern Oregon study sites where...
Water treatments were applied to young ponderosa pine trees in the Eastern Cascades, Oregon during the 2003 growing season, and shade treatments were applied during the 2003 and 2004 growing seasons to understand how photosynthesis and soil respiration, particularly the root/rhizosphere fraction (R[subscript rrh]), would respond to increased moisture availability...
The latitudinal structure of annual equatorial Rossby waves in the tropical Pacific Ocean based on sea surface height (SSH) and thermocline depth observations is equatorially asymmetric, which differs from the structure of the linear waves of classical theory that are often presumed to dominate the variability. The nature of this...
This analysis determines the impact of campaign contributions on Senators' legislative activity on the Energy Policy Act of 2003, identifies organizations within the power policy-planning network, and examines the social netwrok of the energy industry and its relationship with the power policy-planning network. After describing the research methods used for...
The purpose of this thesis is to provide an estimate of sunk costs in the U.S. brewing industry and analyze the relationships among sunk costs, advertising, and concentration. The estimation procedures involves three steps: (1) estimation of the market value of new and used plant and equipment per barrel of...
In an initial research proposal of December 1969, the scientists of the Coniferous Forest Biome (CFB), an ecosystem study centered in the Pacific Northwest and part of the larger International Biological Programme (IBP), expressed optimism that computer simulations and systems modeling could transform empirical knowledge of the carbon, water, and...
The Gospel: According to Matt is a novel, told in the first person, simple past tense, depicting the struggle of a young man attempting to make sense of his relationship with his estranged father as he wrestles with a growing crisis of faith. Matt is deeply sincere in his desire...
This research employed both quantitative and qualitative research methodologies to
explore the impact of mobile wireless technology (MWT) in higher education classrooms.
The methodology was developed using systems engineering concepts. A methodology to
evaluate and compare the cost, cost-effectiveness and cost-utility of different MWT
configurations was also developed. Five outcomes...
The impact of SST specification on low-level winds in the operational ECMWF numerical weather prediction model is investigated in the eastern tropical Pacific from comparisons of ECMWF wind stress fields with QuikSCAT satellite scatterometer observations of wind stress during the August–December cold seasons of 2000 and 2001. These two time...
The sentiments expressed by Wells capture the fundamental nature of natural resource and land management in Deschutes, Jefferson, and Crook County, Oregon. Driven by the attraction and abundance of natural and scenic amenities in central Oregon, increases in recreation, tourism, population, development and conflict, have contributed to the complexities of...
Surveys of both patients and health care providers have indicated strong interest, up to 95%, in favor of advance directives, which are legal documents that express patients' healthcare treatment decisions. Despite the widespread support for advance directives, actual completion rates are very low, ranging from 4% to 20% for the...
Since European American settlement of the Intermountain Region, dramatic changes in vegetation composition and structure have occurred in the sagebrush steppe ecosystem. Western juniper (Juniperus occidentalis spp. occidentalis Vasek), although indigenous to the Intermountain Region, has increased since the late 1800s. Considerable work has been done documenting juniper woodland expansion...
The current project investigated the influence of three life transitions on the intimacy and contact siblings share in early adulthood. Using a web-based survey, 260 young adults from two large state universities and community members from the Portland, Oregon area were surveyed about their relationships with a single biological sibling....
Parasites are unique study organisms for evolutionary ecologists. Yet, molecular ecology studies on parasites have lagged far behind those on free-living organisms. The goal of the review in Chapter 2 was to illustrate areas of research that may be of particular interest in relation to the parasitic life style and...
The influence of the Plata, the second largest river in
South America, extends along a coastal strip of 1300 km.
Historical hydrographic and wind data and numerical
simulations are combined to determine the seasonal and
interannual variability of the Plata plume and its relationship
to the magnitude of the river...
After 22 years of eruption at Kilauea Volcano, Hawai'i, an environmental, epidemiological, and ethnographic study was conducted to assess for adverse health effects from chronic exposure to volcanogernc air pollution. Environmental data from 2003 indicated that Kau District, from 37 to 74 km downwind from the eruption, was being exposed...