In the Pacific Northwest, USA, the extraordinarily low snowpacks of winters 2013–2014 and 2014– 2015 stressed regional water resources and the social environmental system. We introduce two new approaches to better understand how seasonal snow water storage during these two winters would compare to snow water storage under warmer climate...
We re-sequenced the Pseudoperonospora cubensis transcriptome to provide the first extensive transcriptome-wide survey of alternative splicing in an obligate biotrophic pathogen during host infection. The libraries from biological replicates of cucumber leaves infected with Ps. cubensis for 2, 3, 4, and 8 days post inoculation (dpi) were re-sequenced using 100-mer...
Matlab code is included for detecting and tracking acoustic scattering layers from processed Echoview data. Acoustic scattering layers are ubiquitous, horizontally extensive aggregations of both vertebrate and invertebrate organisms that play key roles in oceanic ecosystems. However, currently there are no conventions or widely adaptable automatic methods for identifying these...
We report the sequence and characterization of the genomes of 21 isolates of Rhodococcus. Next generation sequencing technology was used to generate genome sequences. The reads for each genome were de novo assembled. The contigs were re-ordered, using the genome sequence of A44a as a reference. The program, Prokka, was...
Transcription factor (TF) genes were modified endogenously to include epitope tags for identification of TF protein binding sites by Chromatin Immunoprecipitation (ChIP), followed by high throughput sequencing. We used RNA-sequencing in carbon sources of sucrose, butyrate, and oleate in far-1, far-2, and a double far-1; far-2 mutant to find transcripts...
All necessary data files (including a README file) associated with the Master's Thesis titled: Contrasting Epiphytic and Ground Layer Macrolichen Communities along the Coast-to-inland Climatic Gradient in Oregon.
1.) We investigated the potential of cross-scale interactions to affect the outcome of density reduction in a large-scale silvicultural experiment to better understand options for managing forests under climate change.
2.) We measured tree growth and intrinsic water-use efficiency (iWUE) based on stable carbon isotopes (d13C) to investigate impacts of...
We characterized wildfire transmission and exposure within a matrix of large land tenures (federal, state, and private) surrounding 56 communities within a 3.3 million ha fire prone region of central Oregon US. Wildfire simulation and network analysis were used to quantify the exchange of fire among land tenures and communities...
Research data has gained wider acceptance as important scholarly products in and of themselves, and funding agencies, such as the National Science Foundation (NSF), have introduced requirements for Data Management Plans (DMPs) and data archiving. Accordingly, academic and research libraries are devoting significant consideration, effort, and resources toward expanding their...