The relationship between nutrients and community structure is poorly understood in open-coast habitats. I created a system of artificial tidepools, of identical age and physical dimensions, at two sites that differed in wave exposure, and manipulated nutrient levels and the abundance of herbivores. Using these unique field mesocosms, I explored...
Oceanic uptake of rising anthropogenic CO₂ emissions has caused the emergence of ocean acidification as a major threat to marine ecosystems worldwide. Along eastern boundary current systems, seawater is naturally acidified due to coastal upwelling of low pH seawater from depth. Compounded by ocean acidification, upwelling regions are expected to...
Collective robotic systems are biologically-inspired and exhibit behaviors found in spatial swarms (e.g., fish), colonies (e.g., ants), or a combination of both (e.g., bees). Collective robotic system popularity continues to increase due to their apparent global intelligence and emergent behaviors. Many applications can benefit from the incorporation of collectives, including...
Previous observations of light levels and phytoplankton abundances along the Oregon coast demonstrated that phytoplankton attenuated light sufficiently to potentially limit the growth of intertidal macrophytes and therefore structure local intertidal communities. Inspired by this observation, in spring 2004, I initiated a study to quantify the direct and indirect benthic...
1. Theoretical and empirical ecology has transitioned from a focus on the role of negative interactions in species coexistence to a more pluralistic view that acknowledges that coexistence in natural communities is more complex, and depends on species interactions that vary in strength, sign, and reciprocity, and such contexts as...
Ocean acidification (OA) has emerged as an important focus of research and policy in this decade. Ocean acidification specifically refers to changes in the inorganic carbon system in the ocean resulting from its absorption of human-released CO₂ from the atmosphere. Anthropogenic atmospheric CO₂ levels are rapidly increasing; much of this...
Ecosystems are shaped by processes occurring and interacting over multiple
temporal and spatial scales. Theory suggests such complexity can be simplified by focusing on
processes sharing the same scale as the pattern of interest. This scale-dependent approach to
studying communities has been challenged by multiscale meta-ecosystem theory, which
recognizes that...
Full Text:
in
rocky intertidal habitats
Menge, B. A., Gouhier, T. C., Hacker, S. D., Chan, F., & Nielsen, K. J
Ecosystems are shaped by processes occurring and interacting over multiple
temporal and spatial scales. Theory suggests such complexity can be simplified by focusing on
processes sharing the same scale as the pattern of interest. This scale-dependent approach to
studying communities has been challenged by multiscale meta-ecosystem theory, which
recognizes that...
Ecosystems are shaped by processes occurring and interacting over multiple
temporal and spatial scales. Theory suggests such complexity can be simplified by focusing on
processes sharing the same scale as the pattern of interest. This scale-dependent approach to
studying communities has been challenged by multiscale meta-ecosystem theory, which
recognizes that...
Ecosystems are shaped by processes occurring and interacting over multiple temporal and spatial scales. Theory suggests such complexity can be simplified by focusing on processes sharing the same scale as the pattern of interest. This scale-dependent approach to studying communities has been challenged by multiscale meta-ecosystem theory, which recognizes that...
Through bottom–up inputs and larval transport, benthic–pelagic links can have an important effect on benthic community structure. Recent work on community structure of northeast Pacific rocky shores has focused on latitudinal differences in recruitment of intertidal invertebrates as a driver of variation in community structure. Recruitment differences are associated with...
Nearly complete sequences of RNA-CP and 3'-proximal RNA-TGB were determined for 43 samples of potato mop-top virus (PMTV) originating from potato tubers and field soil from Sweden, Denmark and the USA. The results showed limited diversity and no strict geographical grouping, suggesting only a few original introductions of PMTV from...
Wind-driven coastal ocean upwelling supplies nutrients to the
euphotic zone near the coast. Nutrients fuel the growth of phytoplankton,
the base of a very productive coastal marine ecosystem
[Pauly D, Christensen V (1995) Nature 374:255–257]. Because
nutrient supply and phytoplankton biomass in shelf waters are
highly sensitive to variation in...
Nearly complete sequences of RNA-CP and 3'-proximal RNA-TGB were determined for 43 samples of potato mop-top virus (PMTV) originating from potato tubers and field soil from Sweden, Denmark and the USA. The results showed limited diversity and no strict geographical grouping, suggesting only a few original introductions of PMTV from...
Full Text:
Åkerblom • Mogens Nicolaisen •
Steen Lykke Nielsen • James M. Crosslin • Philip B. Hamm • Johanna Santala
On Oregon coastal rocky shores, filter‐feeders were relatively abundant and macrophytes were relatively scarce at Strawberry Hill, whereas opposite abundance patterns occurred at Boiler Bay. To determine whether nearshore oceanographic differences were associated with these patterns, we made shore‐based measurements of nutrient and Chl a concentrations. We used a three‐level...
Limnology is undergoing a transition to high-throughput -omic analysis of freshwater
bacterial communities. An important first step in making the transition is to
characterize several genomes that can be used as references to guide metagenome
assembly and analysis. Here I characterize four new freshwater cyanobacterial
genomes, a pair of lake...
This dissertation focuses on the importance of pelagic subsidies in the Northeast Pacific to rocky shore community regulation. My results document the patterns of pelagic subsidy supply, determine if those subsidies are correlated with community structure, and examine if community regulation differs between areas of high- and low-subsidies. Understanding how...
What does comida rica mean? In this thesis, I explore the meanings of comida rica, sana, and de nuestra tierra through the discourses, practices, and kitchen geographies in six urban, highland households in the Ecuadorean Andes. This research, as part of a larger investigation carried out by a team of...
The focus of this thesis is to design, characterize, and apply novel computational methods and molecular systems to interrogate heterogeneous human gut microbiome-related phenomena. In Chapter 2, I design, implement, and characterize a method for embedding co-occurrence patterns derived from massive 16s amplicon datasets. I use this method to 1....