Cartwright and Longuet-Higgins (1956) describe the statistical distribution of maxima that would result from the linear superposition of random, Gaussian waves. The distribution function depends solely upon the relative width of the power spectrum and root-mean-square value of the process time series. Runup field data from three experiments are presented...
Alongshore-separated time series of natural swash motions were obtained over a range of environmental conditions using a video technique. Although the frequency spectra and normalized wavenumber spectra for these motions were particularly bland, wavenumber-frequency spectra of these data showed clear partitions of infragravity band energy levels associated with various wave...
Runup kinematics on a gently sloping natural beach are examined with detailed measurements from video images, resistance wires deployed at five elevations (between 5 and 25 cm) above and parallel to the beach face, and pressure sensors located in the inner surf zone. As suggested in a previous study comparing...
Beach response to overwash processes is a topic of significant importance. Two
particular aspects of this topic were chosen for detailed analysis: the distribution of
maximum wave runup elevations and the cross-beach celerity gradient of overwash bores
on natural beaches. Data were collected using both traditional nearshore instrumentation
and recently...
Equilibrium climate sensitivity of the Community Climate System Model, version 4 (CCSM4) is 3.20 degrees C for 1 degrees horizontal resolution in each component. This is about a half degree Celsius higher than in the previous version (CCSM3). The transient climate sensitivity of CCSM4 at 1 degrees resolution is 1.72...
In the absence of formal insurance, fishers often ”self-insure” against financial risk due to environmental and economic factors by adjusting fishing activities over species, space, and time. This diversification can be effective (e.g., Kasperski and Holland, 2013; Cline, Schindler, and Hilborn, 2017; Sethi, Dalton, and Hilborn, 2012; Fuller et al.,...
We review several approaches that have been used to estimate ocean surface gravity wavenumbers from wave-resolving remotely sensed image sequences. Two fundamentally different approaches that utilize these data exist. A power spectral density approach identifies wavenumbers where image intensity variance is maximized. Alternatively, a cross-spectral correlation approach identifies wavenumbers where...
Sandbars are ubiquitous, yet not well understood
beach features that change their position and shape in
response to changing wave conditions. We propose and test
a simple empirical model consisting of two coupled linear
differential equations that represents bar dynamics in terms
of wave forcing and two other state variables:...
Plantation forests on mountainous areas in Tanzania, East Africa, were successfully
established in the 1950's. Harvesting started in the 1970's to meet increased national
timber demand. Current problems of unharvested areas and potential environmental
degradation are associated with uncontrolled harvests, mismatch of harvest systems to
site needs, and post-harvest practices....
Lagrangian particle tracking (LPT) models are used to explore how physical processes influence the transport of particles (e.g., eggs, larvae, or propagules) in the ocean. On the Oregon continental shelf and slope, the Northern California Current System (CCS) is influenced by spatially and temporally variable coastal currents driven by weather,...
Community re-assembly following future disturbances will often occur under warmer and more moisture-limited conditions than when current communities assembled. Because the establishment stage is regularly the most sensitive to climate and competition, the trajectory of recovery from disturbance in a changing environment is uncertain, but has important consequences for future...
The significant revenue involved in marine aquarium trade notwithstanding, in developing countries generates gainful employment and alternate livelihood in rural sector to fishers. Despite rich biodiversity of marine ornamental fishes and ideal milieu for expansion of trade the sector remains at infancy. However, absence of primary database on marketing is...
Measurements on growth traits up to 41 years of age
from 68 progeny sites in eight first-generation breeding
zones of coastal Douglas-fir (Pseudotsuga menziesii
[MIRB.] FRANCO var. menziesii) in the US Pacific Northwest
were used to investigate age trends of genetic parameters
and to determine optimum age of selection. Heritabilities...
A method for nesting, estimating and testing for the rank and functional form of the income terms in an incomplete system of
aggregable and integrable demand equations is derived. Information theory is applied to the problem of inferring the U.S.
income distribution using annual time series data on quintile and...
Under the IIFET 2018 Special Session “Tools for Stock Assessment, Economic Fishery Analysis, and Risk Assessment for Sustainable Management Strategies of Data Poor Stocks in Mixed, Small Scale and Indigenous Fisheries” a number of stakeholder presentations addressed the current status, challenges, needs and future perspectives for implementation of management and...
Debris flows have typically been viewed as two-phase mixtures of sediment and water, but in forested mountain landscapes, wood can represent a sizable fraction of total flow volume. The effects of this third phase on flow behavior are poorly understood. To evaluate whether wood can have a significant effect on...
An important field of study within the exercise science realm lies in identifying risk factors for musculoskeletal injuries to inform injury prevention programs. One of the more serious injuries in sports, especially sports involving cutting and jumping, is sprain of the anterior cruciate ligament (ACL). Previous research has found that...
An important field of study within the exercise science realm lies in identifying risk factors for musculoskeletal injuries to inform injury prevention programs. One of the more serious injuries in sports, especially sports involving cutting and jumping, is sprain of the anterior cruciate ligament (ACL). Previous research has found that...
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Leg Jump Landing Biomechanics
Michelle Correia, Eunwook Chang, Samuel T. Johnson, Marc F
As computational power increases, so does the desire to use computational simulations while designing fuel plates. The downside is multi-physics simulations – or more specifically, fluid–structure interactions (FSI) as addressed herein – require a larger amount of computational resources. Current simulations of a single plate can take weeks on a...
Female sexual promiscuity is a prevalent element of mating systems. One consequence of female sexual promiscuity is that male‐male competition often continues post‐copulation within the female’s reproductive tract. According to theory, the number of sperm a male inseminates relative to his rivals strongly predicts his fertilization success. However, sperm quality...
The eastern Georges Bank haddock resource is shared and managed by the U.S. and Canada through a transboundary resource sharing agreement. This agreement includes an annual process for joint stock assessment, setting of a TAC, and harvest shares for each country. The resource sharing agreement provides a mechanism for establishing...
This study investigates the effect of projected temperature increases on maritime mountain snowpack in the McKenzie River Basin (MRB; 3041 km(2)) in the Cascades Mountains of Oregon, USA. We simulated the spatial distribution of snow water equivalent (SWE) in the MRB for the period of 1989-2009 with SnowModel, a spatially-distributed,...
In many animal species, males direct more intense courtship towards females they have not previously encountered,
than towards females with which they have previously mated. To test the factors responsible for this "Coolidge Effect", we need
studies on a wide range of taxa – including those with mating systems in...
Long-term functional changes after whole-body vibration (WBV) training have been attributed to adaptations in the neuromuscular system. The present study examined the effect of four weeks of WBV training on muscle function outcome variables [rate of force development (RFD), electromechanical delay (EMD)], and spinal control mechanisms (pre-synaptic inhibition). Forty young...
Published February 1956. Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog
The submarine Amsterdam-St. Paul (ASP) Plateau, bisected by the Southeast Indian Ridge (SEIR), is a bathymetric high rising ~2 km above the surrounding seafloor that includes the islands of Amsterdam and St. Paul; this excess volcanism is attributed to a mantle hot spot. We obtained new Sr, Nd, and Pb...
The conventional view of equatorial dynamics requires that the zonal equatorial wind stress be balanced, in the mean, by the vertical integral of “large-scale” terms, such as the zonal pressure gradient, mesoscale eddy flux, and mean advection, over the upper few hundred meters. It is usually presumed that the surface...
Sputter deposited amorphous Ge thin films had their nanostructure altered by irradiation with high-energy Ar⁺ ions. The change in the structure resulted in a reduction in medium range order (MRO) characterized using fluctuation electron microscopy. The pulsed laser crystallization kinetics of the as-deposited versus irradiated materials were investigated using the...
Temporary rivers are increasingly common freshwater ecosystems, but there have been no global syntheses of their community patterns. In this study, we examined the responses of aquatic invertebrate communities to flow intermittence in 14 rivers from multiple biogeographic regions covering a wide range of flow intermittence and spatial arrangements of...
Muddy and/or musty off-flavors in farmed-raised catfish occur as a result of the absorption of geosmin (GEO) and 2-methylisoborneol (MIB), compounds produced by algae. Previous research suggests the acid pH-shift method may be able to reduce off-flavors to produce a consumer acceptable product. The objective of this research was to...
Vacuum ultraviolet reflectivity measurements of three thin-film electroluminescent phosphors, zinc sulfide (ZnS), strontium sulfide (SrS), and strontium-calcium thiogallate (Sr₀.₄₅Ca₀.₅₅Ga₂S₄), are reported using thin-film samples. Measured ZnS reflectivity peak positions are in agreement with values previously reported in the literature. SrS room temperature reflectivity measurements are found to be consistent with...
Longleaf pine (Pinus palustris Mill.) forests are characterized by unusually high understory plant species diversity, but models describing understory ground cover biomass, and hence fuel load dynamics, are scarce for this fire-dependent ecosystem. Only coarse scale estimates, being restricted on accuracy and geographical extrapolation, are available. We analyzed the dynamics...
Seabirds have often been proposed as environmental indicators. Beached bird data may provide an additional data source and such data is efficacious because it can reliably be collected by volunteers. In addition to anthropogenic factors, such as oil spills, changes in the ocean-atmosphere can affect carcass beaching rate in 3...
Variation in cold-hardiness traits, and their extent of genetic control and interrelationships, were investigated
among individuals (clones) within a single large full-sib family of coastal Douglas-fir (Pseudotsuga menziesii var.
menziesii (Mirb.) Franco) from Oregon. Cold injury to needle, stem, and bud tissues was evaluated in fall 1996 and
spring 1997...
Pursuit of the triple bottom line of economic, community and ecological sustainability has increased the complexity of fishery management; fisheries assessments require new types of data and analysis to guide science-based policy in addition to traditional biological information and modeling. We introduce the Fishery Performance Indicators (FPIs), a broadly applicable...
For many historical and contemporary experimental studies in marine biology, seawater carbonate chemistry remains a ghost factor, an uncontrolled, unmeasured, and often dynamic variable affecting experimental organisms or the treatments to which investigators subject them. We highlight how environmental variability, such as seasonal upwelling and biological respiration, drive variation in...
Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog
Contextualization is a curricular approach and a learning process in which science content knowledge is intentionally situated within a context where that knowledge can be authentically applied or observed. Many recent science education reforms include contextualization as a central tenet. Our goal in this review was to examine commonalities across...
Polymerase chain reaction (PCR) primers are reported for 68 nuclear-encoded microsatellites developed during the past several years from genomic libraries of red drum (Sciaenops ocelwtus). All68 microsatellites were tested for reproducibility and polymorphism on a sample of five to 12 red drum; 60 of the microsatellites were found to be...
Fish monitoring programs often rely on the collection, species identification, and counting of individual fish over time to inform natural resource management decisions. Thus, the utility of the data used to inform these decisions can be negatively affected by species misidentification. Fish species misidentification bias can be minimized by confirming...
The sorbed gases at all four Ocean Drilling Program Leg 139 sites (855, 856, 857, and 858) showed the unmistakable presence of thermogenic hydrocarbons. No indication of abiogenic gas was found. The evidence for the thermogenic hydrocarbons includes elevated contents of higher hydrocarbons (i.e., C₁/[C₂ + C₃] ca. 2-20), δ¹³CCH₄...
Ocean Drilling Program (ODP) Leg 138 was designed to study the late Neogene paleoceanography of the equatorial Pacific Ocean at time scales of thousands to millions of years. Crucial to this objective was the acquisition of continuous, high-resolution sedimentary records. It is well known that between successive advanced piston corer...
Benthic foraminifer and δ¹³C data from Site 849, on the west flank of the East Pacific Rise (0°11'N, 110°3l'W; 3851 m), give relatively continuous records of deep Pacific Ocean stable isotope variations between 0 and 5 Ma. The mean sample spacing is 4 k.y. Most analyses are from Cibicides wuellerstorfi>...
Measurements of upper ocean shear made during the Mixed Layer Dynamics Experiment (MILDEX) provide evidence of large horizontal scale motion at near‐inertial frequency. The measurements consist of shipboard acoustic Doppler current profiles. Four large‐scale spatial surveys of 2–4 days duration were made by the R/V Wecoma as a set of...
Since June 2010, the Geostationary Ocean Color Imager (GOCI) has been collecting the first
diurnally resolved satellite ocean measurements. Here GOCI retrievals of phytoplankton chlorophyll
concentration and fluorescence are used to evaluate daily to seasonal changes in photophysiological
properties. We focus on nonphotochemical quenching (NPQ) processes that protect phytoplankton from...
Since June 2010, the Geostationary Ocean Color Imager (GOCI) has been collecting the first
diurnally resolved satellite ocean measurements. Here GOCI retrievals of phytoplankton chlorophyll
concentration and fluorescence are used to evaluate daily to seasonal changes in photophysiological
properties. We focus on nonphotochemical quenching (NPQ) processes that protect phytoplankton from...
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phytoplankton
photophysiology
O'Malley, R. T., Behrenfeld, M. J., Westberry, T. K., Milligan, A. J., Shang, S
Marine teleost fishes often experience over 99% mortality in the early life stages (eggs and larvae), yet larval survival is essential to population sustainability. Marine fish larvae from a wide range of families display elaborate, delicate features that bear little resemblance to adult forms and hinder their swimming escape ability...
Marine teleost fishes often experience over 99% mortality in the early life stages (eggs and larvae), yet larval survival is essential to population sustainability. Marine fish larvae from a wide range of families display elaborate, delicate features that bear little resemblance to adult forms and hinder their swimming escape ability...
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fishes utilize Batesian mimicry
as a survival strategy in the plankton
Adam T. Greer*, C. Brock
Marine teleost fishes often experience over 99% mortality in the early life stages (eggs and larvae), yet larval survival is essential to population sustainability. Marine fish larvae from a wide range of families display elaborate, delicate features that bear little resemblance to adult forms and hinder their swimming escape ability...
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survival
strategy in the plankton
Adam T. Greer1,4,*, C. Brock Woodson1, Cedric M. Guigand2, Robert K
BACKGROUND: The impact of cell-composition effects in analysis of DNA methylation data is now widely appreciated.
With the availability of a reference data set consisting of DNA methylation measurements on isolated cell types, it is
possible to impute cell proportions and adjust for them, but there is increasing interest in...
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BACKGROUND: The impact of cell-composition effects in analysis of DNA methylation data is now widely appreciated.
With the availability of a reference data set consisting of DNA methylation measurements on isolated cell types, it is
possible to impute cell proportions and adjust for them, but there is increasing interest in...
Full Text:
methylation array data:
a mathematical perspective
Houseman, E. A., Kelsey, K. T., Wiencke, J. K., & Marsit
BACKGROUND: Cell lineage-specific DNA methylation patterns distinguish normal human leukocyte subsets and can
be used to detect and quantify these subsets in peripheral blood. We have developed an approach that uses DNA
methylation to simultaneously quantify multiple leukocyte subsets, enabling investigation of immune modulations
in virtually any blood sample including...
BACKGROUND: Cell lineage-specific DNA methylation patterns distinguish normal human leukocyte subsets and can
be used to detect and quantify these subsets in peripheral blood. We have developed an approach that uses DNA
methylation to simultaneously quantify multiple leukocyte subsets, enabling investigation of immune modulations
in virtually any blood sample including...
Full Text:
., Wiencke, J. K., Houseman, E. A., Nelson, H. H., & Kelsey, K.
T. (2014). Quantitative reconstruction of
Context: Antibiotic prescribing in hospice patients is complicated by the focus on palliative rather than curative care and concerns regarding increasing antibiotic resistance.
Objective: To estimate antibiotic use in a national sample of hospice patients and identify facility and patient characteristics associated with antibiotic use in this population.
Methods: This...
Context: Antibiotic prescribing in hospice patients is complicated by the focus on palliative rather than curative care and concerns regarding increasing antibiotic resistance.
Objective: To estimate antibiotic use in a national sample of hospice patients and identify facility and patient characteristics associated with antibiotic use in this population.
Methods: This...
Full Text:
,
1
Jessina C. McGregor PhD,
2
Erik K. Fromme MD MCR,
3, 4
David T.
Bearden PharmD,
2
and Jon
Marine teleost fishes often experience over 99% mortality in the early life stages (eggs and larvae), yet larval survival is essential to population sustainability. Marine fish larvae from a wide range of families display elaborate, delicate features that bear little resemblance to adult forms and hinder their swimming escape ability...
An important field of study within the exercise science realm lies in identifying risk factors for musculoskeletal injuries to inform injury prevention programs. One of the more serious injuries in sports, especially sports involving cutting and jumping, is sprain of the anterior cruciate ligament (ACL). Previous research has found that...
We examined 1454 juvenile Chinook salmon, Oncorhynchus tshawytscha (Walbaum), captured in nearshore waters off the coasts of Washington and Oregon (USA) from 1999 to 2004 for infection by Renibacterium salmoninarum, Nanophyetus salmincola Chapin and skin metacercariae. The prevalence and intensities for each of these infections were established for both yearling...
BACKGROUND: The impact of cell-composition effects in analysis of DNA methylation data is now widely appreciated. With the availability of a reference data set consisting of DNA methylation measurements on isolated cell types, it is possible to impute cell proportions and adjust for them, but there is increasing interest in...
Total water levels (TWLs) within estuaries are influenced by tides, wind, offshore waves, and streamflow, all of which are uniquely affected by climate change. The magnitude of TWL associated with various return periods is relevant to understanding how the hydrodynamics of a bay or estuary may evolve under distinct climate...
Ocean fronts represent productive regions of the ocean, but predator-prey interactions within these features are
poorly understood partially due to the coarse-scale and biases of net-based sampling methods. We used the In
Situ Ichthyoplankton Imaging System (ISIIS) to sample across a front near the Georges Bank shelf edge on two...
An important constraint on mechanisms of past
carbon cycle variability is provided by the stable isotopic
composition of carbon in atmospheric carbon dioxide (δ¹³C-CO₂) trapped in polar ice cores, but obtaining very precise
measurements has proven to be a significant analytical challenge.
Here we describe a new technique to determine...
Submarine landslides are an important process in volcano growth yet are rarely observed and poorly understood. We show that landslides occur frequently in association with the eruption of West Mata volcano in the NE Lau Basin. These events are identifiable in hydroacoustic data recorded between ~5 and 20 km from...
BACKGROUND: Cell lineage-specific DNA methylation patterns distinguish normal human leukocyte subsets and can be used to detect and quantify these subsets in peripheral blood. We have developed an approach that uses DNA methylation to simultaneously quantify multiple leukocyte subsets, enabling investigation of immune modulations in virtually any blood sample including...
Since June 2010, the Geostationary Ocean Color Imager (GOCI) has been collecting the first diurnally resolved satellite ocean measurements. Here GOCI retrievals of phytoplankton chlorophyll concentration and fluorescence are used to evaluate daily to seasonal changes in photophysiological properties. We focus on nonphotochemical quenching (NPQ) processes that protect phytoplankton from...
Resazurin (Raz) and its reaction product resorufin (Rru) have increasingly been used as reactive tracers to quantify metabolic activity and hyporheic exchange in streams. Previous work has indicated that these compounds undergo sorption in stream sediments. We present laboratory experiments on Raz and Rru transport, sorption, and transformation, consisting of...
A miniature thermistor chain (mTc) was developed to measure the subdiurnal variability of temperature in
the upper layers of subtidal coastal permeable (sandy) sediments and across the sediment-water interface (SWI).
The mTc has 15 precision thermistors (0.002°C accuracy) attached by narrow tines to a stainless steel backbone
that connects to...
Sexual conflict over mating can result in sex specific morphologies and behaviors that
allow each sex to exert control over the outcome of reproduction. Genital traits, in
particular, are often directly involved in conflict interactions. Via genital manipulation,
we experimentally investigated whether genital traits in red-sided garter snakes influence
copulation...
Context: Antibiotic prescribing in hospice patients is complicated by the focus on palliative rather than curative care and concerns regarding increasing antibiotic resistance.
Objective: To estimate antibiotic use in a national sample of hospice patients and identify facility and patient characteristics associated with antibiotic use in this population.
Methods: This...
Analysis of observations and sensitivity experiments with a new three-dimensional global model of stable carbon isotope cycling elucidate processes that control the distribution of delta C-13 of dissolved inorganic carbon (DIC) in the contemporary and preindustrial ocean. Biological fractionation and the sinking of isotopically light delta C-13 organic matter from...
The physical demands of rapid and economical running differ from the demands of fighting in ways that may prevent the simultaneous evolution of optimal performance in these two behaviors. Here, we test an hypothesis of functional trade-off in limb bones by measuring mechanical properties of limb bones in two breeds...
A plan irregularity rapid visual screening method for seismic performance assessment of
wood-frame, single-family dwellings is presented. Results from 124 samples were compared
with (i) building-specific, non-linear time-history analysis, and (ii) FEMA 154 and ASCE 31
Tier 1. Verification using two houses damaged in the 1994 Northridge Earthquake is
presented....
Non-breeding sooty shearwaters are the most abundant seabird in the California Current Large Marine Ecosystem (CCLME) during boreal spring and summer months. This, combined with relatively great energy demands, reliance on patchy, shoaling prey (krill, squid, and forage fishes), and unconstrained mobility free from central-place-foraging demands-make shearwaters useful indicators of...
A network of autonomous underwater hydrophones is used to monitor acoustic activity associated with Hunga Ha'apai-Hunga Tonga volcano during a period of 15 months. The data provide a continuous record spanning a surtseyan eruption (VEI 2) in March of 2009, which input ~10¹³ J of acoustic energy into the ocean...
A custom radiation monitoring system was developed by Oregon State University at the request of the Woods Hole Oceanographic Institute to measure radioactive cesium contaminants in the ocean waters near Fukushima Dai’ichi Nuclear Power Plant. The system was to be used on board the R/V Ka’imikai-O-Kanaloa during a 15 d...