The purpose of this capstone is to provide a reassessment of the emergence of biophilia in interpretive programs conducted in California State Parks. More specifically, this project examines what effect natural resource interpretive programming has on the emergence of biophilia practices and if participants are more likely to be more...
Our experiments aimed to investigate responses of the marine cyanobacteria Prochlorococcus and Synechococcus to toxic arsenic species, such as arsenate, and to understand cellular mechanisms that contribute to arsenic tolerance. We used two strains of Prochlorococcus, a high-light adapted MED4 and low-light adapted MIT9313, both axenic, for cultivation experiments. For...
Contemporary spiritual tourism impacts many stakeholders including environmental ecosystems, tourists, tourist operators, and community members. Increasingly, in the era of the Anthropocene, there is a need for ethical guidance to inform spiritual tourism so as to mitigate social injustice and environmental degradation. This research project investigates the potential for the...
Many industries in California are difficult to decarbonize, making carbon capture and storage (CCS) essential to reach net zero. California has committed to deliver an enormous 100 thousand tons per year of carbon storage by 2045. Despite much interest in carbon sequestration, there are currently no active geologic carbon capture...
We present student perceptions of a new first-year engineering programming class that was designed by informed research practices. While the College of Engineering at Oregon State University saw a lot of major switching in the first year, there were not many students switching into computer science (CS). This could have...
Septoria canker remains the most important disease of poplars in intensively managed forest plantations. Genetic resistance has long been considered the best way to manage for this disease. Transgenic resistance mediated by RNA silencing against pathogens and pests (HIGS: host-induced gene silencing) has shown promise in other pathosystems but has...
Human-robot teams involve humans and robots collaborating to achieve tasks under various environmental conditions. Successful teaming requires robots to adapt autonomously in real-time to a human teammate's state. An important element of such adaptation is the ability for the robot to infer the tasks performed by their human teammates. Human-robot...
Continental shelf sediments are sinks for dissolved oxygen and sources of many major and minor nutrients required for oceanic surface primary production, resulting in a strong coupling between benthic and pelagic biogeochemical cycling. However, the influence and spatiotemporal variability of benthic remineralization on bottom-water chemistry and the supply of nutrients...
Oregon's estuaries are important ecosystems for scientific study. Consequently, knowledge of what research has been conducted helps us identify benchmarks and plan new projects. A comprehensive bibliography of published research, technical reports, local documents, and data sets is one means of recording this knowledge. For these reasons, the Guin Library...
Oregon's estuaries are important ecosystems for scientific study. Consequently, knowledge of what research has been conducted helps us identify benchmarks and plan new projects. A comprehensive bibliography of published research, technical reports, local documents, and data sets is one means of recording this knowledge. For these reasons, the Guin Library...
Oregon's estuaries are important ecosystems for scientific study. Consequently, knowledge of what research has been conducted helps us identify benchmarks and plan new projects. A comprehensive bibliography of published research, technical reports, local documents, and data sets is one means of recording this knowledge. For these reasons, the Guin Library...
Oregon's estuaries are important ecosystems for scientific study. Consequently, knowledge of what research has been conducted helps us identify benchmarks and plan new projects. A comprehensive bibliography of published research, technical reports, local documents, and data sets is one means of recording this knowledge. For these reasons, the Guin Library...
Oregon's estuaries are important ecosystems for scientific study. Consequently, knowledge of what research has been conducted helps us identify benchmarks and plan new projects. A comprehensive bibliography of published research, technical reports, local documents, and data sets is one means of recording this knowledge. For these reasons, the Guin Library...
Oregon's estuaries are important ecosystems for scientific study. Consequently, knowledge of what research has been conducted helps us identify benchmarks and plan new projects. A comprehensive bibliography of published research, technical reports, local documents, and data sets is one means of recording this knowledge. For these reasons, the Guin Library...
Resident and migratory avifauna in the Willamette Valley, Oregon are heavily influenced by winter conditions and habitat characteristics, especially those of wetlands. As such, it is important to monitor avian communities and environmental factors at wetland sites within the Willamette Valley during winter. Using data from standardized avian point-count surveys,...
Standard larval Pacific oyster (Crassostrea gigas) rearing systems can be described as either static or continuous flow. While rearing oyster larvae in static cultures can be a low-cost and simple method, static systems require significant husbandry effort, floorspace and can produce highly variable results due to environmental variance among cultures....
Metabolomics has recently gained momentum in biomolecule research and complements the genomics and proteomics research space. Metabolomics strives to detect, identify, and quantify all metabolites present in biological samples. In particular, biomolecular analysis using ultra-performance liquid chromatography combined with mass spectrometry (UPLC-MS) has become increasingly important for metabolomic analyses. Similarly,...
As we contemplate the future of forest landscapes under changing climate conditions and land-use demands, there is increasing value in studying historic forest conditions and how these landscapes have changed following past disturbances. Historic landscape paintings are a potential source of data on preindustrial forests with highly detailed, full-color depictions...
Copper and iron are essential micronutrients that are required by marine primary producers for a variety of metabolic processes. Over 99% of both copper and iron are bound within organic complexes in the marine environment, however the molecular identity of many of these complexes remains unknown. The speciation of these...
Multiagent learning offers a rich framework to address challenging real-world problems such as remote exploration and healthcare coordination, which require autonomous agents to express elaborate interactions. To be effective in such systems, agents must collectively reason about and pursue high-level, long-term, and possibly nebulous objectives while adapting their strategy to...
In the past two decades, the advancement in data collection and storage have led to the accumulation of complex datasets. Consequently, various industries have sought data-driven solutions to predict and detect anomalies. Temporal patterns have emerged as potential features in prediction models that could improve the performance of the identification...
In this report, we present climate projections for Union County that are relevant to specified natural hazards for the 2020s (2010–2039) and 2050s (2040–2069) relative to the 1971–2000 historical baseline. The projections are based on multiple global climate models for both a lower greenhouse gas emissions scenario (RCP 4.5) and...
This study is an ethnographic investigation of residential turnover, organizational memory, and the persistence of Lost Valley, an Oregon ecovillage founded in 1989. Literature on organizational turnover, memory, and persistence is reviewed and integrated with scholarship on intentional communities and ecovillages, generating a theoretical framework for data collection and analysis....
Concrete has been categorized as a key contributor of CO2 (carbon) emissions into the atmosphere. This is mostly associated with the production of ordinary portland cement (OPC). The concrete and cement industries are pursuing a path to reduce their carbon emissions generally in accordance with the climate change goals outlined...
Student conduct has become increasingly significant in higher education as demands to address campus safety, student behaviors, and classroom management are increasingly prominent. Existing research focuses on the efficacy of student conduct policies and practices, but has not established how individuals understand student conduct as a myth, or a concept...
Just off the coast of the Pacific Northwest lies the Cascadia Subduction Zone (CSZ); odds of a very large CSZ earthquake occurring in the next 50 years is estimated to be about 37%. A CSZ seismic event has the potential to cause wide scale damage not just to the power...
The intricate relationship between wildlife health and the quality of their environment is well established, with technological advances increasing our understanding and aiding the unraveling of underlying mechanisms. Large herbivores require forage of sufficient quality to maintain their condition to reproduce and survive, all while warding off parasites and predators...
This dissertation consists of three essays that provide comprehensive insights into the complex dynamics shaping entrepreneurial and organizational outcomes. In the first essay I incorporate the Biophilia Hypothesis and the Challenge Hindrance Stressor framework to study entrepreneurial creativity. The findings emphasize the importance of more frequent nature visits for entrepreneurs...
Low-tech habitat restoration techniques, including Stage 0 treatments, are increasingly applied but often lack robust evaluation of their effects. In 2018, one kilometer of the South Fork McKenzie (SFMK) River, OR was modified to the Stage 0 condition for the benefit of ESA-listed Chinook by raising the incised channel to...
This thesis argues that the first two novels of Cormac McCarthy’s The Border Trilogy mark a sharp turn from the antihumanism of his earlier ‘Southern’ novels to a more affective exploration of posthumanist subjectivity within a world dominated by social discourse and metanarratives. In my examination of All the Pretty...
Toxin production by cyanobacterial harmful algal blooms (cyanoHABs) in freshwater systems has lasting ecological and human impacts. Nutrients, light availability, hydrology, and microbial community composition impact the frequency and intensity of toxic cyanoHABs. Climate change will exacerbate toxic cyanoHABs, making real time and predictive monitoring a vital tool for managing...
In this report, we present climate projections for Morrow County that are relevant to specified natural hazards for the 2020s (2010–2039) and 2050s (2040–2069) relative to the 1971–2000 historical baseline. The projections are based on multiple global climate models for both a lower greenhouse gas emissions scenario (RCP 4.5) and...
In the months preceding the 2016 presidential election and during the Trump presidency, rhetoric, composition, and communications scholars expressed an urgent concern about the threat that Trump and his political affiliates posed to the status of truth in political life (McComiskey; Rice; Harsin; Cloud). However, the conversations surrounding the discipline’s...
The objective of this dissertation is to examine federally administered soil conservation policy within the United States and the broadly defined Columbia River Basin in the US Northwest. I accomplish this in five chapters. In the first chapter I provide background information for the study. In the second chapter I...
In this report, we present climate projections for Douglas County that are relevant to specified natural hazards for the 2020s (2010–2039) and 2050s (2040–2069) relative to the 1971–2000 historical baseline. The projections are based on multiple global climate models for both a lower greenhouse gas emissions scenario (RCP 4.5) and...
In this report, we present future climate projections for Polk County relevant to specified natural hazards for the 2020s (2010–2039) and 2050s (2040–2069) relative to the 1971–2000 historical baseline. We present projections that are based on multiple global climate models for both a lower greenhouse gas emissions scenario (RCP 4.5)...
Quick and accurate measurements of nanoparticles have important applications in biology, environmental and non-proliferation areas. Calculation of isotopic ratios, particularly in special nuclear materials, has relied on integration of nanoparticle counts and limited the capability of counting minor isotopes. Rapid transient detection method of nanoparticles has demonstrated the effectiveness of...
Dual use pasture systems, sometimes referred to as dual purpose pasture systems, take advantage of the land being used to maximize multiple outputs from a single area. Developing a system to support both production of grazing livestock as well as pollinator health is of increasing importance in pasture-based farming systems....
Following European-American colonization of North America and associated landscape changes, barred owls (Strix varia) underwent a dramatic expansion of their historical range. The barred owl expanded across the previously tree-less Great Plains that had limited their distribution, and into the forests along the west coast. In these western forests they...
Pseudomonas aeruginosa is a ubiquitous environmental microbe, opportunistic pathogen, and a highly social organism. P. aeruginosa utilizes a wide array of cooperative behaviors to adapt to the environmental conditions around it. These behaviors include quorum sensing (QS), a form a cell-to-cell signaling that coordinates the expression of secreted products in...
Oceanic plateaus are regions of overthickened oceanic crust and are often thought to form from the interaction of mantle plumes with oceanic lithosphere. These regions can cover vast areas of the ocean basins and represent a highly elevated magmatic flux relative to normal mid-ocean ridge spreading. Oceanic plateaus are considered...
Consistent with its charge under Oregon House Bill 3543, the Oregon Climate Change Research Institute (OCCRI) conducts a biennial assessment of the state of climate change science, including biological, physical, and social science, as it relates to Oregon and the likely effects of climate change on Oregon. This sixth Oregon...
Bibliographia Bopyridarum is prepared and maintained by John Markham, Arch Cape, Oregon, USA. Any reports of errors or omissions are greatly appreciated. Please contact Dr. Markham with suggestions: jmarkham@seasurf.net This file is updated annually.
Here the diversity and phylogeny of the genus, Sthereus Motschulsky, 1845, and its nearest associates in the large subfamily Molytinae are explored through molecular and morphological characters. Sanger sequencing of five genes determined that Sthereus is not monophyletic. Instead, the one species in the genus Gastrotaphrus Buchanan 1936, G. barberi...
At a time when environmental conditions are rapidly changing, understanding how thermal extremes impact wildlife is imperative to fully understanding the consequences of climate change in natural ecosystems. While many organisms are currently impacted by rapidly warming and more erratic environmental conditions, identifying and investigating model species whose life histories...
Within the Pacific Northwest, USA, root diseases of conifers are a major forest health concern. These diseases are primarily caused by basidiomycete fungi. These fungal associates play a vital role in carbon sequestration but also have a significant negative economic impact within the timber industry. As a result, research on...
The scale of pest and disease dispersal is often larger than the scale of individual farms. Therefore, an individual grower’s response to pests and diseases can affect and is affected by their surrounding growing region. Individual growers are also not isolated, and engage in various forms of information gathering, sharing,...
This is an IRB-exempt thesis exploring place relationship in the valley of Lake Creek, Oregon, at Triangle Lake. An interdisciplinary ethnography of place, it involves a synthesis of archaeological, historical, and ethnographic literature; an analysis of nineteenth-century Coos, Alseya (Alsea), and Kalapuya myth-texts from Native oral tradition; a history of...
The Manual on Uniform Traffic Control Devices prohibits positioning a bike lane right-adjacent to a vehicle turn-only lane to mitigate the potential for right-hook crashes. However, it provides no specific guidance on positioning with respect to bus-only lanes. This thesis describes a before/after safety evaluation of bike lanes positioned left...
North American bighorn sheep (Ovis canadensis) have experienced significant declines and population extirpations due to novel pathogens such as Mycoplasma ovipneumoniae. This disease continues to limit the population restoration of bighorn sheep. Therefore, understanding the demographic consequences of pathogen presence and the risk of contact between bighorn populations and potential...
Understanding how the latitudinal distribution of methane sources changed between stadial and interstadial climate states during the last glacial period can provide important clues about how terrestrial hydroclimate and ecosystems evolved between these different states. The punctuation of the millennial-scale structure by Heinrich events is also of interest in this...
Iterative algorithms are simple yet efficient in solving large-scale optimization problems in practice. With a surge in the amount of data in past decades, these methods have become increasingly important in many application areas including matrix/tensor recovery, deep learning, data mining, and reinforcement learning. To optimize or improve iterative algorithms,...
Beginning with the inception of American art history as a formal discipline in the 1940s, the dominant mode of interpreting nineteenth-century American landscape painting has been to view aspects of the landscape as symbols for grand cultural, religious, national, and moral narratives. While this method of interpretation highlights some key...
Grapevine red blotch virus (GRBV) is a single-stranded DNA virus that causes grapevine red blotch disease (GRBD). Symptoms of GRBD include red discoloring of leaf margins and red veins on the underside of the leaves. GRBD affects the plant's metabolism and photosynthetic pathways, and disrupts carbon translocation and chlorophyll concentrations....
Severe wildfires are increasing in the western United States, impacting vegetation structure, and in turn, forest regeneration conditions. These wildfires are also raising a substantial amount of scientific and management concern regarding the resilience of forested ecosystems, or the ability of the ecosystem to return to a pre-fire condition. This...
Background: According to the National Mental Health Survey (NMHS), the treatment gap of any mental disorder in India among the general population was reported to be as high as 83% (R. S. Murthy, 2017). There is insufficient evidence currently describing the treatment gap among the child and adolescent population. Given...
Wildfire impacts have intensified in many ecosystems across the western United States due to the combined impact of fire exclusion, climate change, and land management practices. However, on many of these landscapes, fire is a fundamental ecological process that has shaped vegetation structural and compositional diversity, ecosystem function, landscape pattern,...
Hop (Humulus lupulus L. var. lupulus) is a diploid, dioecious plant with an extensive history of cultivation and use in brewing, as a textile, and for its therapeutic properties. Hop is prized for its ability to produce a variety of aromatic and flavor compounds, as well as compounds with anti-microbial...
Programming is integrated across the workflow of multiple domains where end-user programmers, those who need to program as a means to an end, regularly need to code. In the modern setting of collaborative development, end-user programmers have to interpret the intentions behind existing code to contribute and build solutions to...
Managers of forest and plantation ecosystems are encountering growing problems involving plant pathogens and the expanding geographic ranges of these pathogens. Historically unexposed stands are exceptionally vulnerable when a non-native pathogen is introduced because these pathogens can cause devastating disease in a host population that lacks co-evolved resistance mechanisms. One...
Throughout their lifetime individuals are exposed to complex mixtures of chemicals. The study of chemical mixtures is an internationally recognized research priority, but seemingly complex challenge. To reduce the intricacy of studying mixtures, researchers have identified different prioritization methods based on exposure or the toxicity of chemicals. However, understanding the...
American first ladies have long used the media to promote their image. Michelle Obama, the first lady of the @FLOTUS Twitter account, used this government controlled platform to communicate, campaign and bring attention to important White House events. Using Chang Wan Woo et al. rhetorical purpose(s), this study conducts a...
Pesticides benefit agriculture by increasing crop yield, quality, and security. However, pesticides may inadvertently harm bees, which are valuable as pollinators. Thus, candidate pesticides in development pipelines must be assessed for toxicity to bees.
Leveraging a data set of 382 molecules with toxicity labels from honey bee exposure experiments, we...
The global demand for food is expected to double by 2050, presenting a need that is complicated by the many interrelated of pressures on the world’s natural resources from climate change, growing urban populations, and increasing development. As one of the fastest growing food production sectors, aquaculture is poised to...
Systems biology is a powerful approach which considers and sheds light on all of the puzzle pieces which make up complex biological processes, and is an effective alternative to unraveling these processes using traditional molecular approaches alone. It is a natural companion approach for computational biology, which leverages the power...
This thesis argues for the importance of justice of recognition not only for humans, but the entire non-human world in the face of environmental destruction and climate crisis. The common response to the degradation of the world’s ecological sphere is to act with technological, scientific, and material based responses. However,...
Intimate partner violence (IPV) is a prevalent issue that impacts individuals around the world. Mental health professionals need comprehensive and inclusive IPV training to support victims/survivors well. The IPV literature posits several concerns surrounding the quality of IPV training that counselors-in-training (CITs) receive. Obtaining an understanding in how master’s level...
Energetic resources transferred between distinct habitats or ecosystems, referred to as allochthonous resources, can greatly subsidize consumers in the recipient habitat, and thus influence food web structure and dynamics. Such subsidies may allow the growth of the consumer population to be decoupled from in situ productivity with effects on consumer...
In the Pacific Northwest (PNW), the two most common root-knot nematodes are Meloidogyne hapla and Meloidogyne chitwoodi. These nematodes can infect a wide variety of crops and can cause significant losses. Currently, it is common for the field of nematology to use labor-intensive microscopy to identify plant-parasitic nematodes based on...
0.1 Purpose of Report
During my time on this project, I have written two reports. My SAE22 ePowertrain report details last year's design, the design process, design changes, and manufacturing in extreme detail. The capstone course report will be useful for future students looking to educate themselves on everything that...
In the face of environmental stressors, change is imperative for species to remain in place. The nature and degree of this change is of great interest, as it sheds light into the ways in which species respond to ecological and habitat change and may continue to respond during periods of...
Abalone (Haliotis) are an iconic species all over the world. They play a vital role in maintaining a healthy coastal ecosystem and hold an important cultural value for coastal communities in California. Almost all wild abalone in California are threatened in some way. The black and white abalone are listed...
The Vietnamese population that migrated to the United States is largely tied to South Vietnam. As the population settled, their strong opposition to communism has driven many in the community towards political alignment with the alt-right and even white nationalists. The proximity to these movements and their seeming tolerance of...
_____________________________________________________________________
Robert Thompson, Committee Member, representing School of Language, Culture, and
Society
In order to advocate for a nonviolent future, I argue throughout this thesis that we must redefine our sense of self within a social context. I assert that Communitarianism, which seeks balance between the individual and their many overlapping communities, can situate our identities as less absolute and more constitutive...
Sexual health is an important part of quality of life for adolescents and young adults (AYAs), but a cancer diagnosis and treatment can have severe physical and psychosocial consequences on this aspect of health. Despite the frequency and distressing nature of sexual health concerns among AYA cancer survivors, sexual health...
Ken Kesey’s One Flew Over the Cuckoo’s Nest is one of the most widely read novels written by an Oregonian. A mute Native American, a boisterous Irish white man, and numerous African Americans working behind the scenes of the narrative all converge in this struggle for autonomy. Little to no...
The National Pygmy Goat Association is a hobby livestock organization founded in 1975. Over the past five decades, it has grown in size and importance, occupying a niche role as the primary breed registry and certification authority for the smallest domestic ruminant. This history attempts to capture the scope of...
In this dissertation I will demonstrate a novel application of self-exciting point process models to mass shooting data. I will also introduce two adaptations to the traditional nonparametric Hawkes process modeling framework. One such modification allows for the estimation of the additional productivity introduced by an event that is not...
Nonalcoholic fatty liver disease (NAFLD) is characterized by an accumulation of neutral lipids in the form of triglycerides and cholesterol esters accounting for >5% of liver weight. Excess neutral lipids accumulate in large lipid droplets, i.e., macrosteatosis, displacing the nucleus of cells. Current theory suggests neutral lipid accumulation is the...
Most marine fishes experience high rates of mortality during their early life history stages with far reaching consequences for adult population dynamics. Within a few weeks of hatching, relatively small changes in larval growth and mortality rates can lead to orders of magnitude variability in year-class strength. Growth and survival...
As one of the most popular data types, the point cloud is widely used in various appli- cations, including computer vision, computer graphics and robotics. The capability to directly measure 3D point clouds is invaluable in those applications as depth information could remove a lot of the segmentation ambiguities in...
In this dissertation, we consider two problems in number theory, both relating to modular forms. First we consider when a given modular form can be expressed as a quotient in Dedekind's $\eta$ function. Rouse and Webb \cite{RW} have determined the integers $N \leq 500$ such that the graded ring of...
1. Ecologists, outdoor professionals and the public work and play in lands with complex histories. Part of decolonizing our professional and recreational practices is to expose settler colonial biases and recognize the histories of colonized lands and the peoples who have stewarded these lands for millennia prior to colonization.
2....
The recent advent of large-scale microbiome studies enabled by high-throughput sequencing calls for innovative statistical methodologies that are capable of tackling a myriad of challenges presented by microbiome data. Compelled by this need, we focus on the development of statistical tools for two types of problems that arise in microbiome...
Climate change will impact the location of suitable habitat for tree species in the Pacific Northwest. Locations that become unsuitable will experience increased levels of tree mortality and diminished levels of tree growth. Understanding how these impacts will spatially manifest is vital for efficient management of natural resources. An invaluable...
Dysferlin is a ∼230 kDa terminally anchored membrane protein that is ubiquitously expressed, but is particularly enriched in skeletal and cardiac muscle tissue. Mutations covering the length of the protein have been linked to muscle wasting diseases including limb-girdle muscular dystrophy and Myoshi myopathy. Dysferlin has been shown to play...
In the mountains of central and southern California, high elevation wilderness areas lack epiphytic lichens that can be used to inform us about atmospheric deposition in multiple ways. Epiphytic lichens are capable of accumulating elements proportionally to the local atmospheric concentration, establishing them as commonly used biomonitor of key elements....
The South Pole ice core (SPC14), drilled in the field seasons of 2014/2015 and 2015/2016, is an intermediate length, 1,751-m ice core which preserves a 54,000-year record of past climate and atmospheric composition. The SPC14 ice core adds to the spatial grid of ice cores in Antarctica extending into the...
Variations in ocean conditions influenced by climate fluctuations may impact fish populations by changing their spatial distribution, physiology, survival, and other ecological features. Somatic growth is a crucial aspect of the biology of fishes and an important contributor to biomass fluctuations. Climate variability also affects somatic growth rates along the...