Gramene (http://www.gramene.org) is an online resource for comparative functional genomics in crops and model plant species. Its two main frameworks are genomes (collaboration with Ensembl Plants) and pathways (The Plant Reactome and archival BioCyc databases). Since our last NAR update, the database website adopted a new Drupal management platform. The...
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genomics and
pathway resources
MarcelaK. Tello-Ruiz1, Joshua Stein1, Sharon Wei1, Justin Preece2, Andrew
Gramene (http://www.gramene.org) is an online resource for comparative functional genomics in crops and model plant species. Its two main frameworks are genomes (collaboration with Ensembl Plants) and pathways (The Plant Reactome and archival BioCyc databases). Since our last NAR update, the database website adopted a new Drupal management platform. The...
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., J. Preece, J. A. Kimbrel, G. L. Marchini, A. Sage, K. Youens-Clark, M.
B. Cruzan and P. Jaiswal
In the thrust to shift away from fossil fuels towards renewable options, Ecuador produces African palm-based biodiesel, which is currently imported by the Unites States. An analysis of this specific interaction was done via personal contact with the industry in Ecuador and extensive literature review of the topic. The results...
This dissertation investigates the problem of uncertainty in complex ecological models. The term "complex" is used to convey both the common and scientific meanings. Increasingly, ecological models have become complex because they are more complicated; ecological models are generally multi-variate and multi-leveled in structure. Many ecological models are complex because...
Gramene (http://www.gramene.org) is an online resource for comparative functional genomics in crops and model plant species. Its two main frameworks are genomes (collaboration with Ensembl Plants) and pathways (The Plant Reactome and archival BioCyc databases). Since our last NAR update, the database website adopted a new Drupal management platform. The...
Equipment and procedures for the rapid measurement of the water vapor
permeability of polymer films and food coatings has been evaluated. The
method uses an electronic sensor to measure the concentration increase in
water vapor diffusing through a film into a chamber of known volume. Air of
known humidity is...
RNA silencing plays a critical role in plant defense against viral infection. Plants use virusderived
small interfering RNA to target and silence invading viruses. The antiviral silencing
pathway can be broken down into three conceptual stages: initiation, amplification, and systemic
movement. The molecular mechanisms of silencing initiation are not well...
The future of agricultural research depends on data. The sheer volume of agricultural biological data being produced today makes excellent data management essential. Governmental agencies, publishers and science funders require datamanagement plans for publicly funded research. Furthermore, the value of data increases exponentially when they are properly stored, described, integrated...
Propose a sampling plan to determine Hg contamination in the Nanay river basin.
The sampling plan is for a feasibility pilot, to investigate whether it is possible to safely collect samples for Hg analyses. Future studies will build on these initial results.
Multiplicative random cascades (MRCs) can parsimoniously generate highly intermittent patterns similar to those in rainfall. The elemental MRC model parameter is the cascade weight, which determines how rainfall at one scale is partitioned at the next smallest scale in the cascade. While it is known that the probability density of...
Diverse scientific fields collect multiple time series data to investigate the dynamical behavior of complex systems: atmospheric and climate science, geophysics, neuroscience, epidemiology, ecology, and environmental science. Identifying patterns of mutual dependence among such data generates valuable knowledge that can be applied either for inferential or forecasting purposes. Vector autoregressive...
This paper, that follows from the ongoing Ecost project, departs from the reality of marine biodiversity degradation in the Caribbean. It first enquires how local fishing communities appreciate and measure the degradation of marine biodiversity. In this connection, it asks whether communities have social and cultural attachments to particular species....
In CIAT, Centro Internacional de Agricultura Tropical, located
in Palmira, Colombia, a series of experiments were conducted to study
the biology and control of mudplantain (Heteranthera reniformis Ruiz
et Pavon), a member of Pontederiaceae family.
Mudplantain is a perennial aquatic plant which reproduces by both
seeds and stolons. It is...
Background: Functional annotations of large plant genome projects mostly provide information on gene function
and gene families based on the presence of protein domains and gene homology, but not necessarily in
association with gene expression or metabolic and regulatory networks. These additional annotations are necessary
to understand the physiology, development...
Production of Kþ mesons in charged-current νμ interactions on plastic scintillator (CH) is measured using MINERvA exposed to the low-energy NuMI beam at Fermilab. Timing information is used to isolate a sample of 885 charged-current events containing a stopping Kþ which decays at rest. The differential cross section in Kþ...
Vibrio cholerae a major health problem in developing countries because of its ability to cause the disease cholera in humans. As V. cholerae bacteria are common inhabitants of temperate marine and brackish water environments worldwide, they are subject to intense top-down pressure by amoebae, which can affect their survival and...
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. Solis-Ruiz
•John Snow postulated Cholera
to be a digestive disease (enters
through oral-fecal route
Vibrio cholerae a major health problem in developing countries because of its ability to cause the disease cholera in humans. As V. cholerae bacteria are common inhabitants of temperate marine and brackish water environments worldwide, they are subject to intense top-down pressure by amoebae, which can affect their survival and...
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By: Jose M. Solis-Ruiz
An Undergraduate Thesis Submitted to
Oregon State University
New methods, sensors, and devices based on redox indicators were developed to
monitor redox conditions in anoxic and anaerobic laboratory systems and the subsurface
environment. The primary application was monitoring redox conditions
during the dechlorination of tetrachioroethene (PCE) to ethene (ETH) in packed
columns and microcosm bottles containing an enriched...
Issues of injustice in society (e.g. racism, classism, sexism, ableism) are perpetuated in and through educational opportunities, including mathematics learning (Freire, 1970/2000). Those that are committed to disrupting the interlocking systems that create disparities and oppression in mathematics education are considered to be “pursuing justice.” Pursuit of justice can involve...
A framework for understanding the synthesis and catalysis of metabolites and other biochemicals by proteins is crucial for unraveling the physiology of cells. To create such a framework for Zea mays L. subsp. mays (maize), we developed MaizeCyc, a metabolic network of enzyme catalysts, proteins, carbohydrates, lipids, amino acids, secondary...
Platelet-rich plasma (PRP) has been applied as a hemostatic agent since the 1970s, and a potent source of autologous growth factors since the 1990s. PRP is rich in growth factors such as platelet derived growth factor (PDGF), vascular endothelial growth factor (VEGF), transforming growth factor-β (TGF-β), fibroblast growth factor (FGF)...
Gramene (http://www.gramene.org) is a curated
online resource for comparative functional
genomics in crops and model plant species, currently
hosting 27 fully and 10 partially sequenced
reference genomes in its build number 38. Its
strength derives from the application of a phylogenetic
framework for genome comparison and the
use of ontologies...
Gramene (http://www.gramene.org) is a curated
online resource for comparative functional
genomics in crops and model plant species, currently
hosting 27 fully and 10 partially sequenced
reference genomes in its build number 38. Its
strength derives from the application of a phylogenetic
framework for genome comparison and the
use of ontologies...
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Database
K-12
MG1655
BioCyc Keseler et al (2013)
(Escherichia coli)
SUPPLEMENTARY
Gramene (http://www.gramene.org) is a curated
online resource for comparative functional
genomics in crops and model plant species, currently
hosting 27 fully and 10 partially sequenced
reference genomes in its build number 38. Its
strength derives from the application of a phylogenetic
framework for genome comparison and the
use of ontologies...
The commercial Dungeness crab (Cancer magister) fishery is Oregon’s largest trap-based fishery. Each year, crab vessels discard millions of pounds of bait, including squid, razor clams, and sardines, into the near-coastal ocean. Although the fishery season typically runs from December 1st through August 14th, most landings occur within the first...
Population counts of aquatic insects can be a credible indicator of the overall health of a waterway. Stonefly (Plecoptera) larva are very sensitive to chemicals present within the waterway, however obtaining population counts of the larvae can be very labor intensive and thus costly. The BugID project has been working...
International development projects aimed at alleviating poverty often fall short when it comes to capacity for operation and maintenance. As a case in point, today it is estimated one-third of all African wells have fallen into disrepair due to lack of effective management, corresponding to as many as 250,000 broken...
With an increasing number of wireless applications at microwave frequencies, the frequency spectrum is becoming quite crowded. Due to this congestion, the current state of technology is leading towards upper microwave and millimeter wave spectra as they also offer other distinct advantages such as larger bandwidth and smaller component footprint....
Modern wind energy is the technology of choice with a short payback period for increasing renewable energy portfolios. Bonneville Power Administration (BPA), a United States power authority in the Pacific Northwest expects to increase their wind energy capacity from 2,000 megawatts to 6,000 megawatts within the next five years. Currently...
The nucleosome appears to be the basic structural unit of the
eukaryotic chromosome. The usual nucleosome preparation, isolated
from a micrococcal nuclease digest of nuclei, is heterogenous in DNA
length and protein composition with some particles containing spacer
DNA and associated protein. This heterogeneity complicated physical
and reconstitution studies. As...
Deoxyribonucleoside triphosphate (dNTP) concentrations measured in cells are not symmetric. dGTP almost always represents only 5-10% of the total dNTP pools in cells. In an in vitro replication system involving semiconservative replication from an SV 40 origin, the mutation frequency of an M13 phagemid replicated by human cell extracts in...
A theory is developed to provide an analytical solution to an
unsteady flow field which is partially occupied by a porous structure.
The flow is induced by a small amplitude incident wave
train. The porous structure may contain multi-layer anisotropic but
homogeneous media. Three typical porous structures are investigated:
a...
Influenza A and Respiratory Syncytial Virus (RSV) are both enveloped, negative strand
RNA viruses which infect the respiratory mucosa of animals and humans. Despite
decades of research and development of antivirals and vaccines, both of these viruses
continue to be a major health concern throughout the world. The focus of...
Breast cancer is the leading cancer in women with an estimated 13% of women in the United States developing a form of invasive breast cancer in her lifetime. The survival rate is estimated to be 85%, but the American Cancer Society estimates that early detection of breast cancer in the...
Quantification of contemporary sediment and carbon accumulation within Oregon tidal saline wetlands will: (1) fill a critical knowledge gap, and (2) naturally test without complicating variables whether sea level rise or sediment supply primarily control wetland growth. Here we measure vertical accretion rates and carbon burial rates in three Oregon...
High impact loading activities such as jumping, performed during childhood is advocated as one preventive method for increasing peak bone mass. Thus, we conducted a randomized intervention to examine the effect of high impact loading on bone mass in 34 pre-pubescent boys and girl over a seven month period. Participants...
The emerging field of regenerative medicine is mainly approached by two different aspects. First is the use of stem cell based models to generate a suite of differentiated cells for therapeutic applications and the alternative approach is to utilize the non-mammalian models that have the inherent capacity to regenerate their...
To examine the potential for exercise to build bone mass during growth, objectives of this dissertation included: 1) determine the effects of 7 months of jumping followed by 7 months of detraining on hip and spine bone mass in the prepubertal children; 2) determine variables that best predict bone mineral...
A low, but significant, fraction of the carbohydrate portion of herbaceous biomass may be composed of fructose/fructosyl-containing components (“fructose equivalents”); such carbohydrates include sucrose, fructo-oligosaccharides, and fructans. Standard methods used for the quantification of structural-carbohydrate-derived neutral monosaccharide-equivalents in biomass are not particularly well suited for the quantification of fructose equivalents...
Self-regulation in early childhood encompasses higher-order executive function processes and lower-order emotional responses that enable children to navigate the classroom environment. Although self-regulation and executive functions are overlapping constructs, self-regulation represents a broad assessment of children’s ability to call upon executive function processes in order to meet contextual demands. Prior...
Quantification and comparison of morphological changes over the last ~300 y in Oregon salt marshes provide valuable insights into the tectonic, hydroclimatic, and anthropogenic processes shaping this important intertidal zone. Understanding of the rates and drivers of salt marsh change contextualizes intertidal habitats within the sediment routing system (i.e., source...
Sustainable product design is becoming an important component of the development of consumer products. Currently there are limited design resources to aid in the creation of environmentally sustainable products. The purpose of this research is to theorize a new method for integrating sustainable design knowledge into the early design phase...
Snow Peak is a voluminous shield volcano located ~50 km west of the axis of
the modern Cascade arc. A previously published K-Ar age estimate indicates that the
Snow Peak lavas are ~3 Ma. Subsequently, the preliminary research framework for
studying the Snow Peak lavas focused on constraining the petrogenesis...
The intrusion-related Cerro Negro Norte Fe-oxide (Cu-Au) deposit is hosted in andesites and diorites of the early to middle Cretaceous Coastal Cordilleran arc of northern Chile. Tabular and irregularly shaped magnetite orebodies are localized on splays and fractures of the regional NINE striking Atacama Fault Zone. Production from this district...
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, Coastal Cordillera, northern Chile
AN ABSTRACT OF THE THESIS OF
Alexander K Raab for the degree of
Italian ryegrass (Lolium perenne L. spp. multiflorum (Lam.) Husnot) is one of the most troublesome weeds with respect to herbicide resistance selection. Some reasons for this are the numerous documented cases of multiple and cross herbicide resistance and some of the biological characteristics of this species, such as wind cross-pollination...
One of the most economically important genes in squash (Cucurbita spp.) is the B gene which conditions precocious depletion of chlorophyll in preanthesis fruit. The B genes are found naturally occurring in at least three of the five domesticated species of Cucurbita, including C. pepo, C. maxima and, most recently...
This report describes the partial characterization of the first cultivable calicivirus isolated from a European rabbit (Oryctolagus cuniculus), named rabbit calicivirus Oryctolagus-1 and abbreviated RaCv Ory-1. RaCv Ory-1 was isolated from juvenile feeder rabbits displaying symptoms of diarrhea. Absence of neutralization by type specific neutralizing antibodies for 40 caliciviruses and...
Research shows that women's lives are disproportionately impacted by the effects of climate change. While the topic of women is largely absent from climate discourse overall, the representations of women that occur reveal underlying structures of power rooted in imperialism and colonial dominance. This thesis presents an analysis of the...
Calcium alginate gels are widely used in the biotechnology, food, and pharmaceutical industries for cell immobilization, food additives, and controlling the release of therapeutic agents. Different gelation conditions can lead to different gel structures which affects the diffusion of solutes in gels, thus mathematical models were developed to describe diffusion...
This dissertation works towards determining the mechanisms driving the Mo isotopic composition of soils, and how these signals may be used to refine the use of Mo as a proxy of biogeochemical processes. The first step towards quantifying Mo fractionation in soils is to determine the mechanisms controlling Mo accumulation,...
The purpose of this study was to examine the problem solving processes of
Thai gifted students when they solved non-routine mathematical problems. The
research questions guiding the study were: (1) What is the nature of the problem
solving processes that Thai gifted students use as they engage in solving non-routine...
The impact of herbivores on primary producers in differing oceanographic
regimes is a matter of intense ecological interest due to ongoing changes in their abundance,
that of their predators, and anthropomorphic alteration of nutrient cycles and climatic
patterns. Interactions between productivity and herbivory in marine habitats have been
studied on...
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. A., Ruiz, D., & Palacios, D. M. (2014). Oceanographic
and climatic variation drive top-down/bottom
This research has focussed upon both the in vitro and in vivo characterization
of the recycling pathway leading from 5'-deoxy-5'-methylthioadenosine
to methionine in fruit. In addition to contributing towards polyamine
biosynthesis and other important cellular functions, in plant tissues
these events also serve to generate the hormone ethylene. A broad...
Hop (Humulus lupulus L. var. lupulus) is a diploid, dioecious plant with an extensive history of cultivation and use in brewing, as a textile, and for its therapeutic properties. Hop is prized for its ability to produce a variety of aromatic and flavor compounds, as well as compounds with anti-microbial...
In a power system, operators maintain voltage stability through adequate reactive reserves. Maintaining and accessing an efficient allocation of reactive reserves is prohibitively complex because of reactive line losses, the variety of reactive resources, and either limited or variable reactive outputs from renewable sources. By clustering the system into smaller...
The littoral zones of seven reservoirs in the southern Willamette Valley of Oregon were sampled with a boat electroshocker during the summer months of 1995 and 1996. Shoreline substrates were inventoried before sampling sites were randomly selected. Sampling sites consisted of 9 of 12 possible habitat types including four substrate...
Microbial communities in Arctic coastal lagoons drive biogeochemical cycles at the terrestrial-marine interface and help to determine the fate and form of resources like nitrogen (N) and carbon (C) as they are delivered to the Arctic Ocean. Though rising rates of primary production in the Arctic Ocean are well-characterized, the...
Humanitarian logistics in the post-disaster phase of an earthquake requires detailed planning about the relief distribution network including assigning available distribution centers (DCs) to the affected areas, distribution of the relief commodities demanded by the affected population, and efficient allocation of the available vehicle fleet for the distribution in a...
Music performance and education faced unique barriers during the COVID-19 global pandemic which made it nearly impossible to effectively implement online learning. To better understand these barriers and what improvements might be made during future pandemics that entail periods of isolation, I collected the oral histories of eight Oregon State...
Gut microbiota plays an essential role in health and diseases, a fact already established. With the explosive increase in obesity and its main complication, Type 2 Diabetes Mellitus (T2D), there is an immediate need for novel methods of diagnosis, prevention and treatment of these conditions. In the last one and...
Freshwater provided from river discharge influences the dynamics and circulation of most continental shelves around the world. It has profound effects on the transport and fate of materials and substances originated from rivers and estuaries, as well as on the ocean biogeochemistry and marine ecosystems. The effect of buoyancy forcing...
Lagrangian particle tracking (LPT) models are used to explore how physical processes influence the transport of particles (e.g., eggs, larvae, or propagules) in the ocean. On the Oregon continental shelf and slope, the Northern California Current System (CCS) is influenced by spatially and temporally variable coastal currents driven by weather,...
Ballast water discharges are a major source of species introductions into marine and estuarine ecosystems. To mitigate the introduction of new invaders into these ecosystems, many agencies are proposing standards that establish upper concentration limits for organisms in ballast discharge. Ideally, ballast discharge standards will be biologically defensible and adequately...
This pilot study proposed a method for assessing the
status of vascular flow measured by transcutaneous oxygen pressure
(TcPO2) in the area of the ischium in people with spinal cord
injury (SCI). In a sample of 38 men (two groups: 12 physically
active and 26 sedentary) with thoracic SCI, the...
The current proliferation of portable electronic devices for personal
communication, business and entertainment has created a demand for high energy density
power supplies. A hydrocarbon fuel with a conversion efficiency of over
15% can provide greater energy density than current battery technology for these
applications. Current micro-scale heat engines do...
By affecting the ecological, pecuniary and aesthetic productivity of ecosystems, invasive species (IS) increase production and management costs to business, while straining public agencies' budgets with monitoring, enforcement and management efforts. Understanding invasion pathways or vectors, and identifying costs and benefits of alternative management strategies are critical to public and...
Organismal development requires a precisely orchestrated transcriptional program to correctly deploy genetic information into the genome. This process requires sophisticated gene regulatory networks at multiple spatial and temporal levels from early embryonic development to adult physiological conditions. Molecular differences that define cell types are set up during the pattern formation...
We have developed a compact micro total analysis system (μTAS) to serve as a platform for in-situ spectrophotometric water quality monitoring. Individual fluidic, optical, and electrical components were designed, developed, and characterized. These components were combined in both an integrated (single lithographic “chip-based” platform) and a modular manner. The microfluidic...
Vibrio parahaemolyticus is a seafood-borne pathogen that can cause gastroenteritis in humans. This study investigated the effectiveness of refrigerated seawater (5°C) depuration on reducing V. parahaemolyticus in raw Pacific oysters (Crassostrea gigas). Raw Pacific oysters were inoculated with a mixed culture of five clinical strains of V. parahaemolyticus and depurated...
Converting energy from ocean waves is a challenging area for control theory application because of the nonlinear dynamics in various time scales. Generally, wave energy converter (WEC) control is applied in order to maximize power absorption, in the most common wave conditions, and subject to the devices’ physical constraints. Commonly,...
The primary objective of this thesis is to explore new absorber and p-type window layer materials for thin-film solar cell applications. A new thin-film electron beam deposition system has been installed, is now operational, and has been used to deposit several types of solar cell absorber layers. Material investigations include...
Marine calcifiers as a plankton functional type (PFT) are a crucial part of the global carbon cycle, being responsible for much of the carbon export to the deep ocean entering via biological pathways. Deep ocean carbon export through calcifiers is controlled by physiological, ecological and biogeochemical factors. This paper describes...
In eukaryotes, ARGONAUTE proteins (AGOs) associate with microRNAs (miRNAs), short
interfering RNAs (siRNAs), and other classes of small RNAs to regulate target RNA or target
loci. Viral infection in plants induces a potent and highly specific antiviral RNA silencing
response characterized by the formation of virus-derived siRNAs. Arabidopsis thaliana has...
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ARGONAUTE Proteins during
Turnip Mosaic Virus Infection
Garcia-Ruiz, H., Carbonell, A., Hoyer, J. S
In RNA-directed silencing pathways, ternary complexes result from small RNA-guided ARGONAUTE (AGO) associating with target transcripts. Target transcripts are often silenced through direct cleavage (slicing), destabilization through slicer-independent turnover mechanisms, and translational repression. Here, wild-type and active-site defective forms of several Arabidopsis thaliana AGO proteins involved in posttranscriptional silencing were...
Piezoelectric materials convert mechanical strain into a dielectric displacement, as well as the converse, allowing these materials to be used as sensors, actuators, and transducers. Currently, lead zirconate titanate (PZT) is the primary material used in these applications. Due to environmental toxicity and safety concerns associated with Pb, development of...
The sexually transmitted disease gonorrhea, caused by the Gram-negative bacterium and obligate human pathogen Neisseria gonorrhoeae, remains a significant health and economic burden worldwide. In the absence of a protective vaccine, antimicrobial agents are the only pharmacological intervention for patients with gonorrhea. However, due to the remarkable ability of gonococcus...
Load flow studies are one of the most essential engineering applications for grid operators because they provide a clear picture of the operating conditions of the power system. Traditionally, the load flow problem is assumed to be deterministic; that is, the system variables contain no randomness. Unfortunately, this assumption is...
Realizing the vast amount of energy available in ocean waves, an industry has emerged that is progressing towards the deployment of grid–connected wave energy converters. Likely to be deployed in arrays, a challenge to the wave energy industry is maximizing the energy production of such arrays. We have been developing...
Zebrafish are capable of fully regenerating organs and tissue such as their caudal fin, which is similar to a human regrowing an arm or a leg. In contrast, most mammals including humans have a greatly reduced capacity for wound healing. The ability of zebrafish to undergo this regenerative process, called...
Nearly 80% of solid tumors, such as melanoma, metastasize via the lymphatic system. The most common form of melanoma is BRAF-mutant melanoma, and additional mutations, such as a PTEN mutation in the PI3K pathway, is required for metastases to occur. Standard therapy includes treatment with small molecules dabrafenib (DAB) and...
Like other species interactions in ecological systems, host-pathogen interactions are influenced by environmental factors, landscape characteristics and the broader community context. My thesis explores the potential influences of food-web interactions (Chapter 2), climate change (Chapter 3), landscape structure and host movement patterns (Chapter 4), and the combined influences of local...
After 22 years of eruption at Kilauea Volcano, Hawai'i, an environmental, epidemiological, and ethnographic study was conducted to assess for adverse health effects from chronic exposure to volcanogernc air pollution. Environmental data from 2003 indicated that Kau District, from 37 to 74 km downwind from the eruption, was being exposed...
Reconciling rates of organic carbon export from the euphotic zone with the consumption of organic material in the dark ocean remains one of the major quantitative uncertainties of the ocean carbon cycle. Euphotic zone net community production (NCP) provides one broad constraint on export flux and potential carbon drawdown. However,...
Restoration to achieve Stage 0 is a valley-scale, process-based (hydrologic, geologic and biological) approach that aims to reestablish stream depositional environments to maximize longitudinal, lateral, and vertical connectivity at base flows and facilitate development of dynamic, self-formed and self-sustaining wetland-stream complexes. The term Stage 0 originally described complex multi-channel conditions...
Trichodesmium, a major colonial cyanobacterial nitrogen fixer, forms large blooms in NO₃-depleted tropical oceans and enhances CO₂ sequestration by the ocean due to its ability to fix dissolved dinitrogen. Thus, its importance in C and N cycles requires better estimates of its distribution at basin to global scales. However, existing...
Previous studies indicated that fertigating with nitrogen (N) was more effective than using granular N fertilizers in production of northern highbush blueberry (Vaccinium corymbosum L.). To build on these findings, four studies were conducted in western Oregon to determine whether fertigation was also an effective method for applying other nutrients,...
The deep sea is often viewed as a vast, dark, remote,
and inhospitable environment, yet the deep ocean and
seafloor are crucial to our lives through the services that
they provide. Our understanding of how the deep sea functions
remains limited, but when treated synoptically, a diversity
of supporting, provisioning,...
Background: Pearl millet [Pennisetum glaucum (L.) R. Br.] is a widely cultivated drought-and high-temperature tolerant C4 cereal grown under dryland, rainfed and irrigated conditions in drought-prone regions of the tropics and sub-tropics of Africa, South Asia and the Americas. It is considered an orphan crop with relatively few genomic and...
Wood is a major pool of organic carbon that is highly resistant to decay, owing largely to the presence of lignin. The only organisms capable of substantial lignin decay are white rot fungi in the Agaricomycetes, which also contains non–lignin-degrading brown rot and ectomycorrhizal species. Comparative analyses of 31 fungal...
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Nathan Kallen,1 Phil Kersten,12 Annegret Kohler,15
Ursula Kües,16 T. K. Arun Kumar,17 Alan Kuo,2 Kurt
Wood is a major pool of organic carbon that is highly resistant to decay, owing largely to the presence of lignin. The only organisms capable of substantial lignin decay are white rot fungi in the Agaricomycetes, which also contains non–lignin-degrading brown rot and ectomycorrhizal species. Comparative analyses of 31 fungal...
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A. Jurgens,
Nathan Kallen, Phil Kersten, Annegret Kohler, Ursula Kües, T. K. Arun Kumar, Alan Kuo
Wood is a major pool of organic carbon that is highly resistant to decay, owing largely to the presence of lignin. The only organisms capable of substantial lignin decay are white rot fungi in the Agaricomycetes, which also contains non–lignin-degrading brown rot and ectomycorrhizal species. Comparative analyses of 31 fungal...
The climate of the Pacific Northwest is in flux, and existing forest ecosystems are stressed and poised to shift in fundamental ways, with or without human intervention. This dissertation probes the nature of forest responses to environmental change through investigations of morphology and genetics of three species of alder co-occurring...
As blueberry (Vaccinium sp.) production has increased in recent decades, a new interest has developed in the cultivation of blueberry in soilless substrate containers. Historically, blueberry has been propagated and grown in soilless substrate at nurseries, but nursery production is short in duration and plants are small relative to a...
Coastlines have traditionally been engineered to maintain structural stability and to protect property from storm-related damage, but their ability to endure will be challenged over the next century. The use of vegetation to reduce erosion on ocean-facing mainland and barrier island shorelines – including the sand dunes and beaches on...
Expanding efforts to develop preventive gonorrhea vaccines is critical because of the dire possibility of untreatable gonococcal infections. Reverse vaccinology, which includes genome and proteome mining, has proven very successful in the discovery of vaccine candidates against many pathogenic bacteria. However, progress with this approach for a gonorrhea vaccine remains...
Uranyl peroxide clusters are the newest family of polyoxometalates, discovered in 2015. Although this family is new, over 70 topologies have been reported. However, we lack the fundamental understanding of assembly mechanisms, particularly the role of the alkali countercations. Here, we use a wide range of solution and solid-state characterization...