Focus on Forestry is published by Oregon State University College of Forestry. Our goal is to keep Forestry alumni, friends, faculty, staff, and students informed about the College of Forestry and its many activities and programs.
Continental shelf sediments are sinks for dissolved oxygen and sources of many major and minor nutrients required for oceanic surface primary production, resulting in a strong coupling between benthic and pelagic biogeochemical cycling. However, the influence and spatiotemporal variability of benthic remineralization on bottom-water chemistry and the supply of nutrients...
Geospatial data analysis is a multifaceted discipline encompassing the collection, processing, and visualization of diverse datasets. It models and delineates the interactions of people, objects, and phenomena within geographical spaces and predicts patterns based on the relationships between different locations. Despite significant advancements in geospatial data engineering and analytics over...
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Merrick C. Haller
Geospatial data analysis is a multifaceted discipline encompassing
Pesticide chemists have recognized since the 1940's that ultraviolet light was deleterious to the insecticidal properties of certain compounds. However, it has been only within the last 15 years that a number of photodecomposition products of the chlorinated hydrocarbon
insecticides have been isolated and identified. The degradation of insecticides by...
Metabolomics has recently gained momentum in biomolecule research and complements the genomics and proteomics research space. Metabolomics strives to detect, identify, and quantify all metabolites present in biological samples. In particular, biomolecular analysis using ultra-performance liquid chromatography combined with mass spectrometry (UPLC-MS) has become increasingly important for metabolomic analyses. Similarly,...
Diking and channelizing in the Toppenish Creek basin, associated with irrigated agricultural development, has altered its natural ecosystem function and hydraulic processes. We seek to answer two research questions: if surface waters are diverted for aquifer recharge in the winter, will this water be available for ecosystem function in the...
The continued long-term use of fossil fuels as a primary energy source has resulted in dramatic increases in greenhouse gas emissions and the associated concerns of climate change and environmental pollution. A key strategy to circumvent these issues is a global shift away from fossil fuels toward renewable energy sources....
In this study, 3D finite difference and 2D finite element forward modeling were used to create an electromagnetic sensitivity analysis for the Cotopaxi volcano in Ecuador. Magnetotellurics (MT) is a natural-source electromagnetic geophysical technique that images electrical conductivity. Measuring strong contrasts in electrical conductivity in volcanic materials allows for the...
The objective of this dissertation is to enhance the monitoring of forest ecosystems through the utilization of remotely sensed data to address the exigencies posed by the Anthropocene. On a global scale, rising temperatures and fluctuating precipitation patterns have strained forests and produced shifts in natural disturbance regimes. Additionally, the...
An electrically driven propellant pump (HALE E-Pump) was analysed and tested to determine its viability for use in a bi-propellant launch vehicle for the High-Altitude Liquid Engine (HALE) student rocket team at Oregon State University (OSU). The pump, manufactured in 2022 by students in OSU machine shops, was hydrostatically tested...
Music performance and education faced unique barriers during the COVID-19 global pandemic which made it nearly impossible to effectively implement online learning. To better understand these barriers and what improvements might be made during future pandemics that entail periods of isolation, I collected the oral histories of eight Oregon State...
Generating abundant, renewable energy from Earth’s oceans is an attractive option for meeting increasing energy demand. Marine renewable energy also comes with the variability of renewable sources, which impact the reliability and power quality of the electrical grid. On a transmission-level, this dissertation looks at ensuring reliability of the power...
This project uses field recordings to examine the levels of noise pollution present in both rural and urban areas by creating an artistic translation of these soundscapes, representative of how wild birds experience different environments. The field recordings capture not only what is present in a given soundscape, but what...
Nanoscale polymers (including nanoplastics) are widely present through commerce and make their way into the environment. As the improper disposal of plastic waste leads to continued accumulation and degradation of plastic pollution, the presence of plastic particles less than 1 micron (μm) in size (nanoplastics) will increase. Heightened concern over...
Weight-based stigmatization (WBS) exists in healthcare and can be categorized as direct, indirect, or structural. WBS is harmful to individual’s health and contributes to worse healthcare engagement, including reduced care satisfaction, patient-centered communication (PCC), and utilization of services. Little is known about young adults’ experiences of WBS in healthcare. Young...
Ocean Drifters are a low-cost and easy-to-use platform that are commonly used for studying ocean currents. With added interest in studying the ocean, emphasis has been taken to make it more accessible. A pilot course focused on introducing the topic of ocean sensing was announced. The HC 407 course will...
Radiation exposure to the brain can occur from a variety of events, including space missions, nuclear accidents, and clinical treatments. The effects of high dose radiation are well studied, but those of lower dosage are more elusive. Decline of memory and cognition is observed in patients exposed to low dose...
The focus of this thesis is to design, characterize, and apply novel computational methods and molecular systems to interrogate heterogeneous human gut microbiome-related phenomena. In Chapter 2, I design, implement, and characterize a method for embedding co-occurrence patterns derived from massive 16s amplicon datasets. I use this method to 1....
Nearly 24% of Formerly Used Defense Sites (FUDS) containing military munitions are in the nearshore coastal zone with approximately 30% of those sites containing heterogeneous sediment compositions of gravel-sand. Previous exploration in munition mobility was performed on beaches of sandy or muddy bottoms leaving the influence of heterogeneous sediment properties...
Mosses (Phylum Bryophyta) are widely considered to be among the most ancient groups of land plants (embryophytes) and they are the second most speciose embryophyte phylum with ~13,000 extant species. Despite their diversity and antiquity, mosses have a limited fossil record, which primarily consists of gametophytes entombed in Cenozoic amber....
Transformation is a major bottleneck for genetic engineering and gene editing in forest tree species. This includes most genotypes of Populus and Eucalyptus, which are some of the world’s most widely-cultivated genera of plantation forest trees. To provide new tools for transformation, I tested the transcription factor-protein chimera consisting of...
Ultrafast spectroscopy has recently gained momentum as a powerful, noninvasive characterization toolset capable of studying a diverse array of samples with applications in chemistry, physics, biology, engineering, and more. Two popular ultrafast spectroscopic techniques include femtosecond transient absorption (fs-TA) and femtosecond stimulated Raman spectroscopy (FSRS). The latter of these techniques...
In coastal and ocean engineering, understanding the ocean environment and the forces from waves, tsunamis and waterborne debris on structures and floating bodies is an important aspect of designing safe and effective infrastructure. Understanding the impact of these forces on structures becomes an important question in the design process. Answering...
Managers of forest and plantation ecosystems are encountering growing problems involving plant pathogens and the expanding geographic ranges of these pathogens. Historically unexposed stands are exceptionally vulnerable when a non-native pathogen is introduced because these pathogens can cause devastating disease in a host population that lacks co-evolved resistance mechanisms. One...
The COVID-19 pandemic was thought to be especially difficult for older adults, with high risks for social isolation due to the lockdowns necessitated by the pandemic. This study sought to understand the extent to which these community-residing older adults were receiving and providing social support. Further, we sought to disentangle...
Over 100 years separate the 1918 Influenza and COVID-19 pandemics, and a multitude of science, public health and communication advancements have emerged. With the COVID-19 pandemic still underway, recently reaching the one million death mark in the United States alone (CDC, 2020), researchers are searching for clues as to how...
This work – in which three peer-reviewed academic papers are presented – addresses the ap-plication of Bayesian Reinforcement Learning to the control of a class of ocean wave energy conversion systems. The first paper presents a comparison of a Reinforcement-Learning (RL) based wave energy converter controller against standard Reactive Damping...
Multiple wave energy converter (WEC) archetypes exist with varying power take-off (PTO) designs in the attempt to maximize ocean energy harnessed and converted into useful energy. The pendulum PTO is popular for its simple, yet robust functionality due to its internally located components and simple operation. Additionally, this PTO does...
University students first learning about computer science (CS) can be intimidated and frustrated by programming. In addition, the general-purpose programming languages chosen for introducing students to programming contain several features that have the potential to overwhelm and distract them from focused curriculum topics, which can lead to reduced retention of...
The ultimate goal of this work is to analyze and compare two predictive models of thermal profile in laser processing of materials. An analytical method that uses closed-form equations to represent a geometric model of a laser heat source will be contrasted with a commercial computational fluid dynamics code that...
The immune system is a complex network of cellular processes working in harmony to guard us against pathogenic attack. Of utmost importance is the ability of the immune system to discriminate between “self” and “non-self” and diseased versus healthy. Recognition of antigens complexed to major histocompatibility complex (MHC) molecules is...
The coast of Oregon is highly dynamic, with beach and dune morphodynamics constantly evolving in response to physical and ecological forcing at scales ranging from seconds to decades and meters to tens of kilometers. Evaluating spatial and temporal trends in shoreline evolution is paramount in understanding and eventually developing a...
The coastal region is home to many types of surface fronts that exist on a submesoscale (1-10 $km$). While in situ observations capture point or transect observations of frontal behavior subsurface, their complex spatial patterns can be well-captured using remote sensing techniques, which provide synoptic views of the ocean surface...
Wave runup is an important physical process that affects nearshore sediment transport, coastal erosion, and flooding. Large and unexpected runup events can also be dangerous to beach goers. Extreme runup statistics are essential parameters used in engineering design of marine structures and in coastal management. Although the study of runup...
As coastal communities face increasing chronic and acute hazards, nature-based coastal engineering solutions have experienced a rapid growth in popularity and interest. Recent works on this topic have shown that “Green Infrastructure” may be effective at mitigating coastal hazards and therefore provide sustainable adaptation alternatives to traditional engineering solutions such...
Ample research has demonstrated the largely untapped potential of bioactive peptides (BAPs) for treating systematic chronic inflammation (SCI). Protein hydrolysates are the mixture of peptides resulting from the hydrolytic breakdown of a protein. Numerous hydrolysates contain BAPs and exert beneficial effects in both in vitro and in vivo models. In...
This work investigates a methodology for estimating the ocean stratification gradient based on high-resolution, in space and time, remote sensing observations of internal wave propagation speeds. The internal wave speed observations were collected using a shore-based, X-band marine radar and the ocean vertical density profiles were collected simultaneously from an...
Physical modelling is instrumental to the progression of coastal engineering research and our understanding of the offshore and nearshore environments. Scaled models are designed and built to be tested in coastal research laboratories, where a wave basin or flume generates the desired wave conditions for experimentation. The surrounding hydrodynamics of...
Coral reef ecosystems continue to be significantly altered by disease epizootics, but why some host populations remain resistant while others succumb to outbreaks remains unknown. Research across diverse animal and plant host systems has revealed that disease severity is strongly influenced by host genetics and by environmental influences on both...
A variety of stakeholders require information about marine systems. In the open ocean, pilots of marine vessels require knowledge about environmental conditions for safe passage and route planning. On the coastline, communities rely on information about nearshore dynamics to increase safety from coastal hazards such as nearshore pollutants, coastal erosion,...
This work addresses the application of Nonlinear Model Predictive Control (NMPC) to a class of ocean wave energy conversion systems in which the cost functional is not in a standard quadratic form, and the WEC model includes the nonlinear effects, such as the hydrodynamic viscous drag. The NMPC implementation is...
Wave energy has the potential to power large and small factions of economies around the world alike. Current methods for determining the amount of wave energy resource available to wave energy converter (WEC) devices entail capturing the look of the sea state at large by presenting characteristic wave heights, periods,...
Most accidents and malfunctions in complex engineered systems are attributed to human error. However, a closer inspection would reveal that such mishaps often emerge as a result of poor design and human- and component-related vulnerabilities acting together. To fully understand and mitigate potential risks, the effects of such interactions between...
This thesis experimentally determines the feasibility to creating C4 to C10 hydrocarbons from CO2, CO, H2, H2O and CH4. This is done in two steps, the initial step is the formation of ethylene through DC electrical glow discharge at ambient pressure while the second step is through temperature pulse controlled...
Stripe rust (Puccinia striiformis f. sp. tritici) and Septoria tritici blotch (Zymoseptoria tritici) are a constant and significant threat to wheat production, significantly reducing wheat quality and yield. Wheat is responsible for 20% of the world’s human calorie intake, and wheat production must increase to supply the demand of the...
Naturally occurring assemblies, such as DNA and proteins, utilize intermolecular forces (i.e H-bonding and van der Waals) to assemble. Utilizing these electrostatic interactions has only just started in the past five decades to be a tool used in synthetic chemistry in what is known as supramolecular chemistry. Supramolecular chemistry has...
The topics in this dissertation are centered around the way that trees respond to environmental stress in the climates where they occur. Though forests across the planet are expected to experience change in local climate due to historic and ongoing anthropogenic greenhouse gas emissions, the effects of climate change will...
Several wave energy converter designs have been recently proposed that are made of flexible materials. Flexible devices are able to generate electricity by being stretched, and are intended to simplify deployment and maintenance concerns over existing wave energy devices. Due to the relative infancy of flexible wave energy converters, however,...
This Thesis aims to determine whether we can improve the accuracy, resolution, and speed of calculations for common power system problems using simple computational models that scale well to machine learning and high performance computing solutions. The second chapter of this Thesis implements more precise aging and degradation models for...
Recently, an interest in supplementation of vitamin D to improve aspects of health, especially in human fertility, has emerged. However, supplementation of Vitamin D above the minimum required levels to prevent deficiency has yet to be explored in cattle despite evidence for vitamin D receptors in reproductive tissues. The objective...
The rapid growth in the number of roundabouts raises some significant research challenges, especially around safety performance and evaluation in the U.S. Despite the safety advantages that roundabout geometric design brings, crashes still occur. While operationally roundabouts are good at preventing severe crashes, they may lead to more less severe...
Chlamydia is an obligate intracellular bacterial pathogen that causes a variety of disease in animals and humans worldwide. Veterinary chlamydial pathogens can lead to chronic infections and serious consequences that result in millions of dollars of losses in animals and resources in the agricultural industry in countries that rear ruminants....
Faculty research has led to a plethora of innovations and entrepreneurial resources (I&E), allowing for enhancements to the greater social good including, but not limited to, technological and economic advancements. Faculty I&E also enhances faculty competitiveness for funding, institutional image and fundraising, and supports students’ workforce preparation. Over time institutions...
The amount of energy we use and the ways that we get that energy sit on the edge of dramatic change as the carbon budget which can keep the planet under 1.5C of global average temperature increase gets smaller (Allen, 2018). In response, we continue to research and develop renewable...
Marine and coastal sedimentary archives show that the Cascadia Subduction Zone can generate great earthquakes of ~M9, most recently in 1700 CE, yet we still know little of the impacts of these events inland of the Pacific coast. Inland lakes have recently been exploited for their use as paleoseismic records...
Funded through a grant from the National Science Foundation (Award # CNS-1936073), Oregon State University has led a nationwide effort to identify best practices for the inclusive recognition of innovation† & entrepreneurship (I&E) impact within promotion and tenure (P&T) guidelines. The grant PI for this effort is Rich G. Carter....
Understanding the degree to which topography of erosional landscapes in active mountain belts encode the rates and patterns of active deformation in the upper crust is a primary goal in the field of tectonic geomorphology. In particular, the convolved influence of variations in rock mass quality and the erodibility of...
Nonthermal electrical plasmas can allow energy intensive reactions to occur without the use of high operating temperatures or pressures. This is because the collisions of electrons accelerated through an electric field with molecules is the cause of reactions as opposed to thermal collisions between molecules. In this study, the production...
The Pacific Northwest of the United States is characterized by one of the greatest annual mean wave power resources in the world. As a result, the wave energy resource offshore of Oregon has been characterized, through hindcast models and physical buoy data, throughout the past decade. Over the past 8...
Synthetic-aperture radar (SAR) imagery can provide wavenumber and frequency data to generate bathymetry estimates for locations where limited access or extreme ocean conditions can make standard bathymetry survey techniques difficult or impossible. The availability of SAR data could allow for regular bathymetry estimates of navigational channels providing insight into dredging...
The constitutive behavior of high-performance fiber-reinforced cementitious composites (HPFRCCs) under mechanical loading is characterized by significant tensile properties that play an essential role in the structural response of several applications in structural engineering. The significance of tensile properties of HPFRCCs in structural engineering is the focus of three manuscripts presented...
This dissertation outlines the design and development of the first fully-soft, snake robot and its snake-inspired skin. Soft robotics takes advantage of soft materials to, among other things, improve robot interactions with complex, unstructured environments. Due to the interplay between the soft material and the environment, minor tweaks to the...
In the 21st century, environmental deterioration is now an indisputable fact. Reliable and economically viable electricity systems based on renewable sources are urgently needed to replace the environmentally detrimental fossil fuels. The feasibility of incorporating renewable-but-intermittent solar and wind energy heavily depends on the development of cost-effective and safe technologies,...
Drosophila suzukii (Diptera: Drosophilidae) is an insect of global concern that causes serious damage to soft-skinned fruits. D. suzukii is widespread in North America, South America, Europe, and Asia and is listed as an invasive pest with strict quarantine protocols governing import and export. Given the damage caused by D....
Dimensional stability of wood-based composites with changing moisture content remains an important challenge in the industry for many applications. Wood modification technologies have shown significant improvement in dimensional stability by altering the chemistry of the wood substrate, or by filling the available space in the wood microstructure that otherwise would...
Objective: To describe associations between self-reported general health status, chronic conditions, and use of supplements containing botanicals (SCB) and describe reasons for use among U.S. adult supplement users.
Design: Cross-sectional analysis using data from the 2009-2014 National Health and Nutrition Examination Survey (NHANES). Information on self-reported dietary supplement use and...
One of the principal drivers of climate change is the concentration of greenhouse gases such as CO2 in the atmosphere. A large portion of this CO2 ends up in the waters off the continental coasts where it transforms into biomass. The major sink for this matter is the ocean sediments...
This dissertation consists of four studies of Populus and Eucalyptus biotechnology and genomic science: 1) induction of floral sterility by tapetal expression of the ribonuclease Barnase in Populus; 2) CRISPR Cas9-mediated gene editing targeting LEAFY (LFY) and AGAMOUS (AG) homologs in Populus; 3) induction of floral sterility by CRISPR Cas9...
The use of remote sensing techniques in coastal science and engineering has rapidly increased in the past few decades. This dissertation outlines new remote sensing tools using two remote sensing technologies (lidar and X-band marine radar) along with two nearshore hydrodynamic and morphodynamic analyses supported or motivated by these remote...
This repository item contains the files needed to reproduce the results reported in the published work entitled "Runups of unusual size: rogueness and variability of swash" in the Journal of Geophysical Research. As described in the publication, the results described within it pertain to simulations of wave runup for various...
Cell migration is fundamental for physiological processes such as immune re-sponses, wound healing and development. It is also a critical characteristic of metastatic cancer cells. An extensive amount of studies have focused on 2D sub-strates in order to understand the mechanism of cancer metastasis. However, much less is known about...
Despite numerous techniques for measuring and estimating water depth, bathymetry in the nearshore zone is notoriously difficult to map. Dangerous sea states, noisy environmental conditions, and expensive survey operations, particularly in remote areas, contribute to the difficulties of obtaining data along the coast. Global datasets, derived mainly from satellite altimetry...
With the increasing international focus on transboundary cooperation as a part of the Sustainable Development Goal (SDG) Framework, there is global recognition of transboundary water cooperation as a tool for improved governance and management of transboundary surface and groundwaters. Yet, there is not an agreed upon definition of transboundary water...
Climate change impacts on extreme water levels (WLs) at two United States Pacific Northwest estuaries are investigated using a multicomponent process-based modeling framework. The integrated impact of climate change on estuarine forcing is considered using a series of sub-models that track changes to oceanic, atmospheric, and hydrologic controls on hydrodynamics....
Forested headwater streams are critical for the supply of water, sediment, nutrients, and organic matter to downstream water bodies. Nearly half of all headwater streams display temporary flow regimes (i.e., non-perennial), but with climate change they may become more common. Thus, it will be increasingly imperative to adequately represent non-perennial...
The fifth volume of a five-volume series is presented. The contents are arranged under the following chapter headings: (1) Purification, (2) Effects on Materials, (3) Heaters and Coolers, (4) Radiators, Condensers, and Boilers, and (5) Applications.
Diversity literary awards and other sources were used to create a list of high-quality titles written by and about underrepresented groups. This list was used to assess the diversity and inclusiveness of the library collections of a land-grant university. Gaps in the collection and acquisition processes were identified and will...
This classification is an update of the 2004 classification of native vegetation of Oregon by Kagan, Christy, Murray and Titus. As before, this classification lists the native plant associations known to occur in Oregon, and includes both successional and climax vegetation types that were part of the presettlement landscape of...
Rotating disc electrodes (RDEs) exploit the induced flushing of a radially spun electrode to increase the overall rate of analyte flux to an electrode sensing surface and its resulting signal current (i). Here initial efforts to evaluate a rotating platinum (Pt) microelectrode for efficacy as a rapid in situ dissolved...