Fluorescent proteins have emerged as an essential toolset for bioimaging, creating a demand for engineering proteins with new and improved fluorescent properties. In this thesis, I explore the atomistic structure of REX-GECO1, a newly engineered protein biosensor that has unique optical properties. Since this protein has no available crystal structure,...
Autonomous buoys were deployed in 2011 in the central Arctic: An Ice-Tethered Profiler (ITP) and Ice Mass Balance (IMB) buoys were deployed in the Makarov basin; a Polar Ocean Profiling System (POPS) and Ice Thickness (Ice-T) buoy were deployed on the Eurasian Basin. The two different sites were approximately 70km...
Succinate dehydrogenase (Sdh) inhibitor fungicides, such as boscalid, are effective for the management of gray mold caused by the fungal pathogen Botrytis cinerea. Unfortunately, resistance to boscalid was common among isolates of the pathogen from small fruits grown in Oregon. Boscalid-resistance is commonly associated with mutations in Sdh, especially in...
Biogas can be used to generate energy from a wide variety of sources. Wastewater treatment sludge is an effective source of waste to be used for generation of biogas to make energy which can be used to heat homes and run businesses. This would help decrease the use of fossil...
Oregon is the number three producer of strawberries in the nation despite the fact that Oregon strawberry acreage dropped from 2,600 acres in 2005 to 2,000 acres in 2014 (Beeles, 2015; NASS, 2019, Losh, 2017). With over three billion pounds of berries grown nationally each year, strawberries are an important...
Endophytes, foliage inhabiting fungi, are an unexplored source of fungal biodiversity and a potential resource for the production of bioactive natural products. In this research, leaf tissues from the species Arbutus menziesii, Rhododendron macrophyllum and the genus, Ilex and Salix were collected for the isolation of endophytic fungi. Fungal extracts...
Motivated by the Navier-Stokes equations, which are a set of unsolved equations related to fluid motion in R^3, we explored the incompressibility condition and the Neumann boundary problem. After exploring, we noticed that using iterated Riesz transforms of the boundary data could be used to get information about the velocity...
Postpartum uterine inflammation (endometritis) is not uncommon in beef cattle, resulting in infertility and culling. Prolonged calving may contribute to the increased incidence of endometritis in heifers. Commonly used methods to treat endometritis in beef cattle include intrauterine antibiotics and/or hormone injections, which can result in meat residues. Platelet rich...
In 1877 John Kerr described an experiment that demonstrated a quadratic change in refractive index in a plate glass placed in a strong external electric field. This results in a nonlinear relationship between the average electric polarization within the materials and the intensity of the applied electric field. This opened...
Since the advent of graphene, research on 2D materials has exploded. Countless experiments have uncovered novel properties that emerge when different layered crystals are cleaved down to only a few atomic layers in thickness. The most popular of these non-graphene 2D materials is MoS2, a semiconductor which has been of...
Bacterial endophytes have the potential to confer benefits to Douglas-fir ( Pseudotsuga menziesii ), for instance drought tolerance. Bacterial endophytes originating from seeds are especially important. This is because seed endophytes are more likely to be the first endophytes to get established within the young host plant. The goals of...
Exciton polaritons are quasiparticles composed of a quantum superposition of matter and light states that arises from the coupling of a standing wave photon and an exciton. This research has two primary objectives: to design and fabricate a Fabry-Perot microcavity system in which to produce exciton polaritons; and to show...
Terahertz (THz) spectroscopy is a great tool not only to study fundamental physical processes such as many-body Coulomb interaction but also to develop ultrafast electronic devices. More specifically, intense THz fields interacting with semiconductors have exhibited strong nonlinear effect involving extreme carrier dynamics. In this experiment, intense THz radiation was...
Phytochemicals from the genus, Fagonia, have been attracting increasing attention due to their potential beneficial effects on human health, particularly, anti-cancer properties. Certain Fagonia species contain various types of phytochemicals such as saponins, alkaloids, cardiac glycosides, flavonoids, terpenoids, and tannins. In this study, we investigated the phytochemical composition of a...
Gamma ray bursts are some of the brightest events in the entire observable universe. Since the late 1960’s, thousands of gamma ray bursts have been observed and they have been researched extensively. However, there are still many mysteries which remain unsolved. One such mystery is whether or not the viewing...
The current American free-roaming horse (Equus caballus) population far exceeds the appropriate population limit set by the Bureau of Land Management (BLM) to preserve resources on public lands. Several techniques have been tested to assist in decreasing repopulation rates. The purpose of the present study was to analyze two contraceptive...
Currently multi-canonical, and grand canonical Monte Carlo simulations exist, but do not always give all of the necessary information of the system. When using a 1-D (only changing in one variable) broad histogram Monte Carlo method a user would need to run a range of simulations in order to get...
The relationship between the index of refraction and the porosity of a material is that the index decreases with respect to the porosity. This property can be used to change the index of refraction of films which allows control of the reflection of the material. This is important because being...
Multivariable functions permeate physics, mathematics, and other sciences. Understanding how quantities in multivariable relationships change together – or co-vary – is important for studying physical systems. In this project, we asked junior-level physics majors to describe the covariation of quantities in a multivariable context given a 2D graph. We identified...
The ability to focus light through strongly scattering materials is opening up exciting new avenues in many fields, such as optics, computer vision, biology, and medicine, which utilize light delivery and imaging techniques. Efficient, high resolution wavefront shaping and optimization methods are crucial to enabling this new capability.
In this...
Using a plastic bottle, we explore the capabilities of a reflective phase-only Spatial Light Modulator (SLM) in removing wavefront aberrations using a Zernike polynomial phase mask, with the modulators phase depth limited to 0.8π radians. Wavefront aberrations, which can be modeled with Zernike polynomials, distort image transmission through various optical...
Plasmon induced transparency (PIT) describes a spectral response of coupled plasmonic resonators in that coupling between bright and dark modes leads to a destructive interference resulting in a narrow transparency window. This process has many applications in material characterization and advanced optical devices such as slow light devices or ultrafast...
The dynein molecule is a peculiar motor protein recognized for its unique stepping behavior. Sometimes it steps forwards. Other times it steps backwards. It has even been observed to occasionally shuffle by beginning a step with the same domain many times in row. These motions make dynein an interesting object...
Past studies have shown that students struggle with main concepts of potential energy, such as reading graphs, understanding that potential energy can be negative, and, most pertinent to this research project, connecting potential energy to force. I designed an activity to help introductory physics students address these struggles. The activity...
A great variety of topologically protected defects exist in ordinary and exotic states of matter. Some of them are promising candidates for technological applications such as magnetic memory or quantum computers. Others possess some properties of elementary particles that could lead to potential applications in quantum fields. Nematic liquid crystals...
Energy production and consumption is a major environmental and economic concern in the world today. Biofuel produced from lignocellulosic biomass is being explored as an alternative energy source to petroleum. Lignocellulosic biomass is comprised of cellulose, hemicellulose, and lignin. To produce biofuels, lignocellulosic biomass must be broken down to expose...
Due to public and regulatory restrictions, genetic containment technology is critical for research and development of transgenic trees in forestry. A multi-year field trial demonstrated that the RNAi-LFY construct successfully induces sexual sterility in 6K10 poplar (Populus alba) without visible effects on vegetative development. However, its limited number of replicates...
Biohydrogen production via dark fermentation (DF) and microbial electrolysis cells (MEC) demonstrate great potential for sustainable hydrogen generation. In this study, DF and MEC were coupled as a hybrid reactor and evaluated using brewery wastewater. The effect of hydraulic retention time (HRT) and buffer concentration on reactor performance were assessed...
Polycyclic aromatic hydrocarbons (PAHs) are a class of contaminants ubiquitous in the environment and result from the incomplete combustion of fossil fuels. Many PAHs have been identified as procarcinogenic, and are metabolized to form DNA adducts; however, other mechanisms also may contribute to toxicity and help explain differences in toxicity...
Prunus laurocerasus, commonly known as cherrylaurel, is a woody shrub grown in temperate climates for its durability and landscape appeal. Due to its abundance of drupes that are spread by birds, cherrylaurel is a litter nuisance in cultivation and also has escaped cultivation such that it has naturalized. Furthermore, it...
The neutron capture cross sections of ¹⁰⁶Cd, ¹⁰⁸Cd, ¹¹⁰Cd, ¹¹²Cd, ¹¹⁴Cd and ¹¹⁶Cd
were determined in the present project. Four different OSU TRIGA reactor facilities were
used to produce redundancy in the results and to measure the thermal cross section and
resonance integral separately. When the present values were compared...
The thermal cross sections and resonance integrals for neutron capture by ⁷⁴,⁷⁸,⁸⁰,⁸²Se were measured using the same procedure and equipment for all of the isotopes. Uncertainty and absence of accurate previous values for several isotopes introduces a need of measuring these parameters using similar techniques. This was done using OSU’s...
In current nanotoxicology research, there is a lack of standardization in reporting of zebrafish exposure media and sonication practices. This lack of standardization in use and reporting methods has made reproducing nanoparticle (NP) toxicity results between labs a common issue. It is important to have a standardized way of reporting...
There exists a growing need to establish a better in vitro model for evaluating PAH toxicity and carcinogenicity and to improve assessments of risk to human health, especially to the complex mixtures that exist in the environment. Polycyclic aromatic hydrocarbons (PAHs) are ubiquitous environmental contaminants due to the incomplete combustion...
In order to reduce the cost of lignocellulosic ethanol production, a model was previously developed to predict the amount of fermentable sugar released based on parameters concerning both biomass and enzymes. To validate this model, enzymatic hydrolysis must be carried out using individual purified cellulase enzymes. Endo-1,4-β-D-glucanase I (EG I),...
Bacteria are critical to the health of eukaryotes and the ecosystems in which they persist. Some symbiotic interactions are mutualistic in which both microbe and host benefit from the partnership. Other interactions are parasitic, and the microbe typically benefits at a cost to the host. Rhodococcus is a genus of...
The prevalence of obesity and diabetes in the United States and globally has been rising in the last few decades and it continues to climb. One of the causes for this increase is the over consumption of sugars and/or carbohydrates. Among medications available to treat obesity and diabetes are the...
Organic photovoltaics are being explored as the next generation material for semiconducting and optoelectronic devices but are limited by their stability and efficiency. One new candidate is crystallized Anthradithiophene (ADT), which is a promising photo-voltaic material due to its high quantum yield and adjustable side groups. The side derivatives TES-F,...
Cascadia’s 1700 earthquake generated a tsunami and widespread subsidence along Pacific Northwest coastline. The tsunami deposited sandy sediments in many Oregon coastal estuaries, such as Alsea Bay. Although the recurrence of subduction-generated megathrust earthquakes and tsunami events in this region are recorded in the stratigraphy, knowledge of the full inland...
The details of the 1700 Cascadia Subdction Zone earthquake and tsunami can be better constrained using data from tsunami sand sheets, provided knowledge of the waveform, estuary geometry and bed roughness controls on the deposition pattern of the sand sheet. In this study, we use the hydrodynamic and sediment transport...
With the incredible technological advancements that have come from the introduction of plastic many problems have arisen. Once plastics were created the value of items once they reached their end of life were lowered. Considering the majority of all plastics created are for packaging with single-use intentions people now dispose...
The equation of state for a fluid described by the Weeks-Chandler-Andersen (WCA) potential was solved to determine at what pressures and temperatures the fluid will theoretically freeze. A Monte Carlo (MC) algorithm was used to sample a system of 256 spheres for a set of thermodynamic averages to locate and...
The optical transition in high-fraction polymorphs of titania (TiO2) were investigated to determine the band gap behavior of the most common polymorphs—brookite, rutile, and anatase—the values of which are varied in the literature. The direct optical band gaps of brookite, rutile, and anatase, were determined to be 3.37(7)eV, 3.41(11)eV and...
As engineered nanomaterials (ENM) become more common in consumer products, it is crucial to rapidly assess toxicity of unique ENM. Previous studies rarely focused on standardizing nanotoxicity testing, leading to inconsistent and irreproducible results. This study characterized a variety of ENM of different size, shape, core type, and surface charge...
The response of cells to periodic driving is important for many biological processes, particularly blood flow and heart functioning. Our research analyzes the collective shear stress response of fibroblast cells due to a periodic driving frequency. When cells experience shear stress, they release calcium into the cytosol. To quantify the...
Semiconducting materials are of immense importance due to their presence in almost all modern devices. It is possible that the surface physics of semiconductors could be used to control the nanoscale topography and properties of these materials, ultimately creating new options for device fabrication. This could result in profound implications...
The calculation of interplanetary trajectories is a numeric problem which requires a high degree
of precision for the results to be accurate. A computer program was written for this project which
uses leapfrog integration combined with Newton’s method of iterative root finding to find ideal
interplanetary trajectories. Reasonable initial conditions...
Dynein is a motor protein which transports cargo along tracks inside the cell. Like related motor proteins kinesin and myosin, dynein uses cellular energy to take steps with its two foot domains. Unlike kinesin or myosin, dynein’s stepping pattern is highly varied: it can take steps between zero and 60nm...
The standard model (SM) of particle physics describes many of the experimentally observed subatomic particle interactions. However, there are a few discrepancies with the SM namely: matter/antimatter asymmetry and dark energy. A current extension of the SM allows for small amounts of Lorentz Violation to fix these discrepancies. Lorentz Violating...
Dynein is a motor protein which transports cargo along tracks inside the cell. Like related motor proteins kinesin and myosin, dynein uses cellular energy to take steps with its two foot domains. Unlike kinesin or myosin, dynein’s stepping pattern is highly varied: it can take steps between zero and 60nm...
We computationally modeled protostellar star-disk systems with star to disk mass ratio of 10. Our computational models looked at the development of density perturbations in these systems for different geometries of the system. The ratio of the star’s height and radius (rₚ/rₑ) is varied between 0.1746 and 0.88095. We modeled...
Canine Transitional Cell Carcinoma (TCC) makes up 2% of all canine cancers and is the most common cancer of the bladder for dogs. Usually diagnosed in its later stages, TCC is difficult to treat, with low survival times. Current diagnosis involves invasive techniques, and mainstream screening tests are often ineffective....
Feeding cows flaxseed rich in polyunsaturated fatty acids has been shown to decrease the proportion of saturated fatty acids and increase the proportion of n-3 polyunsaturated fatty acids (PUFAs) in milk. Consuming products enriched in n-3 PUFAs have beneficial effects to human health; thus, feeding cows flaxseed could potentially increase...
Fungicide sensitivity of honey bee associated fungi
Abstract - Honey bees are exposed to a wide range of pesticides while pollinating agricultural crops. These pesticides residues are found in beeswax, nectar and pollen in the hive. Some of the pesticides found are fungicides which are not generally considered harmful to...
The Boulder Batholith and Elkhorn Mountains Volcanics (EMV) formed concurrently during shortening between ~85-76 Ma near the end of Mesozoic Cordillera arc magmatism. Together they represent an exceptionally well-preserved and voluminous record of continental arc magmatism. We report field and analytical results from studies of the EMV and Boulder Batholith...
Cyanophage are viruses that infect cyanobacteria, photosynthetic microorganisms which are known to produce several anticancer and antibacterial chemical compounds. Cyanophage are significant members of microbial communities in marine and freshwater environments. There has been significant difficulty inventorying marine and freshwater cyanophage, however, due to the difficulty in cultivating their hosts....
Understanding charge transfer in organic semiconductors is important for developing devices like organic light emitting diodes and flexible electronics. Optical tweezers have been used in many disciplines for trapping, manipulating, and analyzing microscopic objects such as microspheres, micro-organisms, and other colloidal particles. Using optical tweezers, studies have measured the average...
Carbon nanotubes are the subject of intense interest in virtually every field, from medicine to
nano-scale electrical components. Multi-walled nanotubes exhibit a strong nonlinear response
to high-field strength terahertz radiation. This research uses terahertz pulses with field strength
exceeding 1 MV/cm generated by means of optical rectification utilizing a lithium...
Today, with countless study abroad programs available, students have the opportunity to travel and study all over the world. Those who are lucky enough to study abroad are able to embark on an international journey that will change their life forever. This thesis expands on what happens after returning home...
Modifications of histone tail amino acid residues are necessary for many reactions involving chromatin. These processes can produce transcriptionally active, euchromatic, or inactive, heterochromatic, segments of DNA. The formation and maintenance of facultative heterochromatin is critical for the proper growth and development of many eukaryotes. Euchromatin can be changed into...
Throughout a large portion of our planet, malaria has been nearly eradicated or reduced to levels that are highly manageable, and many countries possess the means to effectively treat the disease. However, many areas of the world, such as Sub-Saharan Africa and Southeast Asia, are still heavily burdened by malaria....
Every country has its own unique culinary heritage that has developed over time and that has led to specific eating behaviors, eating patterns, and attitudes toward food. In this thesis, I aim to answer a central question: how have the culinary histories of France and the United States shaped their...
By alloying face centered cubic CaSe with orthorhombic SnSe, we created the heterostructural alloy
Sn1-xCaxSe. The phase separated lms created with a high deposition temperature acted as highly crys-
talline SnSe while the low deposition temperature lms acted as a mix of SnSe and CaSe. For the alloyed
lms we...
Chain rules are critical to the process of solving many thermodynamics-related partial derivatives. This study evaluates the solution method and error evolution of students’ responses to a pair of chain rule problems in an upper-level undergraduate thermodynamics course. Students’ responses were categorized by solution method. Students’ solution methods included implicit...
Kinesins are intracellular motor proteins that transform chemical energy into mechanical energy through ATP hydrolysis to move along microtubules. Kinesin roles can vary among transportation, regulation, and spindle alignment within most cells. Many kinesin have been found to move towards the plus end of microtubules
at a steady velocity. For...
This study examines how students were interacting with pre-lecture videos via the BoxSand website. Students of the Fall 2015 and Fall 2016 introductory physics courses at Oregon State University were studied. The course was taught as a flipped classroom in which the instructional material was provided via BoxSand. BoxSand is...
Understanding the electrical transport properties of graphene provides a basis for determining its future as a potential semiconducting device that can be used for the next generation of transistors and photodetectors. Graphene p-n junctions can also function as field effect transistors, and thus are a logical starting point for I-V...
Microbial electrolysis cells (MECs) for hydrogen production exhibit great advantages over many other biohydrogen production techniques in terms of versatility of substrate and hydrogen yield. However, hydrogen scavenging by methanogens put forward a great challenge to the application of the single chamber MECs when using mixed culture. Various strategies were...
Vibrio cholerae a major health problem in developing countries because of its ability to cause the disease cholera in humans. As V. cholerae bacteria are common inhabitants of temperate marine and brackish water environments worldwide, they are subject to intense top-down pressure by amoebae, which can affect their survival and...
Organic aggregates and transparent amorphous metals are transforming opto-electronic devices such as highly efficiency solar cells and flexible displays. We present a fundamental optical study of how local morphology critically impacts the device performance of both stacked, conjugated organics and In-Ga-Zn-O (IGZO) transparent metallic materials. Derivatives of anthradithiophene (ADT): ADTTES-F,...
In recent decades, the cell phone has provided a convenient form of long-distance communi-cation to the general public. Despite the technological improvements since, cell phones and their smartphone successors have suffered from a lack of clarity over a typical voice call, a result of their limited bandwidth. New phone services,...
The Mount Thompson 7.5 Minute Quadrangle is located in the central Boulder Batholith, between the cities of Butte and Helena. The Boulder batholith is host to numerous metalliferous vein deposits, including those in the Butte District. Recent USGS (EDMAP)-funded geologic mapping at 1:24,000 scale in the Mount Thompson Quadrangle during...
A recent article by Cozzi and Kelliher [3] has demonstrated a sense of "locality" to the incompressible Euler equations which mirrors physical fluid behavior. We further develop the corresponding notion of "damping," and identify both temporal and local damping behaviors. To represent this problem, we perturb the initial condition of...
Western diets can influence behavior and gut microbiome due to the excessive intake of high fat and sucrose. Altering the microbiome can also influence the brain and behavior. The hypothesis that was tested was that diet-induced changes in the microbiome cause changes in cognitive abilities. A previous study showed learning...
Average monthly temperatures (maximum and minimum) and precipitation patterns are expected to change as a direct consequence of anthropogenic climate change. Temperatures are expected to be warmer in the future but precise estimates vary depending on factors like number of ensembles and emission scenario. For this study, we used 100...
Sand dunes provide coastal communities critical protection from flooding and erosion, as well as a habitat for a range of species- some threatened or endangered. As such, it is of importance to develop a quantitative understanding of the processes through which these systems evolve at a variety of temporal and...
Using a simple dry transfer process, I construct and characterize three nanoscale MoS2 devices using current-voltage curves, Raman spectroscopy, optical and atomic force microscopy. I compare these devices, the thinnest of which was few layer ( ≤ 10 nm) MoS₂ capable of showing photoconductance, with a current whose magnitude is...
Columbia Glacier, Alaska’s most rapidly retreating body of ice, provides a compelling insight into the fragile state of tidewater glaciers worldwide. Catastrophic retreat of the glacier’s terminal ice margin began in 1978 when contact was lost with its stabilizing terminal moraine shoal. Since this time, Columbia Glacier has lost ~20...
Bio-oil from hydrothermal liquefaction (HTL) represents a promising fuel source due to large higher heating values and compatibility with current energy infrastructure. For bio-oil production to become commercially viable, novel methods of co-product recycling must be explored.
The aims of this study were to culture Chlorella vulgaris, a common HTL...
This particular study focuses on the changes in the ideas and perspectives of Nicaraguan women throughout the span of several generations. With the gaining popularity and successful strides that women have made to advance the Women’s Movement in Nicaragua, the definition of empowerment, the ideology of stereotypes, and the manner...
The hypothalamic neuropeptide kisspeptin (Kiss-1) acts as a central component of the reproductive axis. A critical factor in pubertal progression and normal reproduction, this peptide is an afferent stimulator of gonadotropin-releasing hormone (GnRH), and is responsive to gonadal steroids, integrating steroid hormone signals and modulating GnRH secretion accordingly. Kiss-1 exhibits...
Diet History Questionnaires (DHQ) can only provide general information about a person’s nutritional intake. It is unable to cluster groups of people based on diets or lifestyles, nor identify specific foods that may play a role in disease prevention. The aim of this study was to validate the use of...
4-H, an agriculture based youth program, promotes a variety of curricula in both agriculture and Science, Technology, Engineering and Math (S.T.E.M.) topics. However, science based curricula provided by this organization gravitates away from the programs agricultural roots. An effort was made to pilot a test on lesson plans that would...
Gene expression in plants (and other eukaryotes) is a very complex process. Gene expression is primarily controlled by proteins and their binding sites near the gene in the chromosomal DNA. More specifically, interactions among transcription factors (DNA-binding proteins) and cis-regulatory modules (CRMs-sets of binding sites) control the expression of nearby...
Monitoring the concentration of phenolic compounds is important for environmental regulation, health diagnostics, and bioenergy fermentation. Vanillin is a phenol compound used as a food flavoring that can cause allergies and inhibits biofuel production. The phenol m-cresol is a toxic compound that is regulated in the environment and in human...
Genetic engineering techniques allow scientists to create plants with desired traits. However, there is unwanted variability in transgene expression due to enhancer-promoter interactions and the influence from genetic elements near the insertion site of the transgene, which integrates into a random location in the genome. In an attempt to reduce...
Embryonic development, where organs and major structures begin to develop, requires precise coordination of numerous gene regulatory pathways. Fendrr is an long non-coding RNA (lncRNA) that plays a role in regulating gene expression in mesodermal tissues during early embryonic development in mouse. The lateral plate mesoderm (LPM) is an earlier...
Liquid manure lagoons are known to be sources of odor and environmentally damaging gas emissions. Land application of the manure slurry after storage can lead to detrimental nutrient runoff and leaching. Floating lagoon covers (biocovers) are one option for reducing emissions, but to date they have only been used to...
The Bcl-2 family of proteins regulate cell survival and are targets for cancer therapy. This protein family has also been implicated in chemotherapeutic resistance, the cause of approximately 90% of treatment failure in advanced cancer. We analyzed the expression and the role of the Bcl-2 proteins in chemotherapy resistant breast...
Current methods in traction force analysis rely on a homogeneous extra-cellular matrix and
embedded microbeads to track deformations. The efficacy of these methods decreases when the matrix is not homogeneous. In heterogeneous matrices, beads often aggregate in regions of higher matrix density and float in regions where matrix substrate is...
Vibrio cholerae (Vc), the etiological agent of cholera, has developed many mechanisms to combat the great fluctuations in pH, ion content and osmotic conditions of the vastly differing environments it encounters through its infections of the human host. A series of cation antiporters are found in the Vc membrane to...
The use of zebrafish in behavioral neuroscience is rapidly growing. Zebrafish can be assessed for alterations in multiple behavioral endpoints, creating opportunities to use this powerful model to identify chemicals that alter behavioral phenotypes. To evaluate the utility of zebrafish for neurotoxicity research, we designed custom instrumentation to evaluate numerous...
The Boulder Batholith and Elkhorn Mountains Volcanics (EMV) formed concurrently during shortening between ~85-76 Ma near the end of Mesozoic Cordillera arc magmatism. Together they represent an exceptionally well-preserved and voluminous record of continental arc magmatism. We report field and analytical results from studies of the EMV and Boulder Batholith...
We construct a Monte Carlo simulation in Python to calculate optical flashes at 5x10¹⁴ Hz peaking at 6x10³¹ erg s⁻¹Hz⁻¹St⁻¹ due to synchrotron radiation from the reverse shock of a gamma-ray burst’s jet. While analytical solutions to this problem exist, they rely on sweeping simplifications of what is necessarily a...
Crystal morphology and dimensionality of single-crystal semiconducting materials can have dramatic effects on the optical and electrical properties. Organic photovoltaic (OPV) materials and fluorinated graphene folds are two materials that show these dependencies. Anthradithiophene (ADT), is an OPV that can be functionalized with different side groups to form different crystal...
I investigate the feasibility of a micron-sized biosensor designed to measure neural activity. The circuitry of the biosensor is composed of graphene, some photodiodes, and a light-emitting diode. Many of these biosensors would be injected into a subject’s brain, and when powered by near-infrared light, they would glow in response...
This research investigates the electronic properties of a fungi-derived pigment, xylindein
as a novel sustainable material for organic electronics. Xylindein molecules were characterized in solution and in film. Absorption spectra and (photo)luminescence spectra were
taken at various excitation wavelengths. Xylindein’s molecular properties were computed
with the Gaussian 09 software suite....
Quantum yield is an important, characteristic quantity to be measured for fluorescent compounds. Here, a comparative method between fluorescent compounds in solution is applied to measure unknown quantum yields. An absorption spectrometer was used to measure the absorbances of two different fluorescent quantum yield standards. The integrated fluorescence intensities were...
High field time-domain terahertz spectroscopy (TDS) is used to determine the time dependent transmission and the time-delay and optical-power dependent conductivity of a wafer of gallium arsenide (GaAs). Gallium arsenide is a direct band-gap semiconductor and has potential as a computer processor component. Analysis of the transmission of terahertz (THz)...