In the spring of 2020, the COVID-19 pandemic began. This prompted quarantines, mask mandates, and stopped many businesses and services. This study asked the question of what people decided to do in terms of their recreation habits in response to the pandemic. We took a sample of Oregon State University...
Simulation has provided much design inspiration for the field of robotics. While many astute ideas can be computationally formulated, there are some good structures in animals that people call “biologically-inspired”. Many robots are designed based on natural creatures such as crabs, spiders, etc. Before we can take full advantage of...
Knowledge workers are struggling in the information flood. There is a growing interest in intelligent desktop environments that help knowledge workers organize their daily life. Intelligent desktop environments allow the desktop user to define a set of “activities” that characterize the user’s desktop work. These environments then attempt to identify...
High Definition video streaming over WLANs faces many challenges because video data requires not only data integrity but also frames have strict playout deadline. Traditional streaming methods that rely solely on either UDP or TCP have difficulties meeting both requirements because UDP incurs packet loss while TCP incurs delay. This...
Flexible Dual-TCP/UDP Streaming Protocol with Adaptive Bitstream Prioritization (FDSP with Adaptive-BP) is a new method for streaming H.264-encoded High-definition (HD) video over WLANs. Traditionally, video streaming is done either using Transmission Control Protocol (TCP) or User Datagram Protocol (UDP) protocol, resulting in either rebuffering or packet loss respectively. While FDSP-based...
As the number of mobile devices accessing large-scale WLANs such as campus
and metropolitan area networks increases, the need for load balancing among the
cells becomes crucial. In addition, the network must also support some minimum
handoff tolerance defined by an application.
A number of load balancing techniques have been...
The ubiquity of high quality video and proliferation of mobile devices has contributed to an unprecedented rise in video consumption. HTTP, in conjunction with adaptive streaming, has become the de facto mechanism for delivering the vast majority of video as it readily caters to heterogeneous networks and devices. This dissertation...
Climate change has pervasive impacts on Earth’s diverse ecosystems. Observed and projected effects that impact coastal environments pose unique challenges. Coastal regions provide numerous ecosystem services (e.g., fisheries, nursery habitats, erosion control, and water filtering and detoxification), house 40% of the US population, and contribute to 58% of the national...
The rapid population growth in large urban cities has led to an unprecedented increase in both the number and the diversity of wireless devices and applications with varying quality of service requirements in terms of latency and data rates. LinkNYC is an example of an urban communication network infrastructure, which...
In recent years, RF (Radio Frequency) device fingerprinting using deep learning has emerged as a method of identifying devices solely by their RF transmissions. Conventional approaches to this type of device fingerprinting are not portable to different domains. That is, if a model for this purpose is trained on data...
RF data-driven device fingerprinting through the use of deep learning has recently surfaced as a possible method for secure device identification and authentication. Traditional approaches are commonly susceptible to the domain adaptation problem where a model trained on data from one domain performs badly when tested on data from a...
Various natural language processing (NLP) tasks necessitate deep models that are fast, efficient, and small based on their ultimate application at the edge or elsewhere. While significant investigation has furthered the efficiency and reduced the size of these models, reducing their downstream latency without significant trade-offs remains a difficult task....
Understanding the effect on the materials mechanical properties from the perspective of interfacial interaction between the filler and the polymer matrix has become an important criterion in polymer nanocomposites field. Cellulose nanocrystals (CNCs) are renewable materials that can be extracted from natural sources, such as wood, cotton, and tunicates. In...
Achieving sharpened (enhanced detail) features of a multi-dimensional data source using the linear prediction (LP) bandwidth extrapolation (BWE) technique in the transform domain is the main objective of this research. The evolution of sensor technology has provided acquisition scenarios in which the data format is inherently multi-dimensional, including hyperspectral imaging...
New materials with superior mechanical properties, such as increased strength and hardness, have been developed to allow for new and improved products. However, the mechanical properties that make these materials useful also makes them difficult to process using conventional methods. New machining processes need to be developed to generate products...
Cryptographic devices leak timing and power consumption information that is easily measurable, radiation of various levels, and more. Such devices also have additional inputs, other than plaintext and keys, like voltage, which can be modified to force the device to produce certain faulty outputs that can be used to reveal...
Energy consumption is one of the primary bottlenecks to both large and small scale modern compute platforms. Reducing the operating voltage of digital circuits to voltages where the supply voltage is near or below the threshold of the transistors has recently gained attention as a method to reduce the energy...
The future of mixed-signal, memory, and microprocessor technologies are dependent on ever increasing analog and digital integration, higher cell densities, and demand for more processing power. As a result MOSFET device dimensions continue to shrink to meet these demands. A side effect of device scaling is increased variability at each...
The meteoric rise and prevalent usage of wireless networking technologies for mobile
communication applications have captured the attention of media and imagination of
public in the recent decade. One such proliferation is experienced in Wireless Sensor
Networks (WSNs), where multimedia enabled elements are fused with integrated
sensors to empower tightly...
Active tectonics of a deformation front constrains the kinematic evolution and structural interaction between the fold-thrust belt and the most-recently accreted foreland basin. At the Himalayan deformation front, the thrust front is blind, characterized by a broad fold (the Suruin-Mastgarh anticline (SMA)), and displays no emergent faults cutting the southern...
The proliferation of mobile users and internet content has advanced a plethora of research areas. Among these areas include mobile networks, transport layer protocols, and smart cities. Research shows that global mobile data traffic will increase sevenfold reaching 49 exabytes per month by 2021, most of which will be mobile...
Machine learning applied to computer architecture has rapidly transitioned from a theoretical novelty to being a driving force behind design, control, and simulation in practically all components. These machine-learning-based methodologies are further notable for their scalability to increasingly complex design challenges, which has allowed these methodologies to surpass the prior...
The Cone Penetration Test (CPT) has been widely-adopted for rapid, cost-effective exploration of the subsurface and reduction in the effort associated with drilling, sampling, and laboratory testing of soil. The adoption of the CPT has stemmed in part to the correlation of measurements to preliminary soil classification, stress history, drained...
Antisense oligonucleotide (AO)-mediated exon-skipping therapeutics shows great promise in correcting frame-disrupting mutations in the DMD gene for Duchenne muscular dystrophy. However, insufficient systemic delivery limits clinical adoption. Previously, we showed that a glucose/fructose mixture augmented AO delivery to muscle in mdx mice. Here, we evaluated if fructose alone could enhance...
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Manner in mdx Mice
Limin Cao1,2, Gang Han1, Caorui Lin1, Ben Gu1, Xianjun Gao1, Hong M Moulton3, Yiqi
Most of today’s Internet of Things (IoT) applications assume that data will be moved offdevices into centralized cloud platforms. While existing IoT systems leverage cloud-based analytics for meaningful data reasoning, the assumption that data should always be moved off the devices is problematic. The amount of data to be moved...
Understanding how the latitudinal distribution of methane sources changed between stadial and interstadial climate states during the last glacial period can provide important clues about how terrestrial hydroclimate and ecosystems evolved between these different states. The punctuation of the millennial-scale structure by Heinrich events is also of interest in this...
Geospatial data analysis is a multifaceted discipline encompassing the collection, processing, and visualization of diverse datasets. It models and delineates the interactions of people, objects, and phenomena within geographical spaces and predicts patterns based on the relationships between different locations. Despite significant advancements in geospatial data engineering and analytics over...
Optical variability occurs in the near-surface and upper ocean on very short time and space scales (e.g., milliseconds and millimeters and less) as well as greater scales. This variability is caused by solar, meteorological, and other physical forcing as well as biological and chemical processes that affect optical properties and...
"The Shellfish Investigation samples the crab catch along the Oregon coast each year for shell condition as an index to meat yield and suitability of season opening dates. In addition to sampling for condition, a number of animals are sampled for width frequencies to determine the mean size of crabs...
Polycomb Repressive Complex 2 (PRC2) function and DNA methylation (DNAme) are typically correlated with gene repression. Here, we show that PRC2 is required to maintain expression of maternal microRNAs (miRNAs) and long non-coding RNAs (lncRNAs) from the Gtl2-Rian-Mirg locus, which is essential for full pluripotency of iPSCs. In the absence...
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Shen, Richard I. Gregory, George Q. Daley, Alexander
Meissner, Manolis Kellis, Konrad Hochedlinger
Pseudoperonospora cubensis is an obligate pathogen and
causative agent of cucurbit downy mildew. To help advance
our understanding of the pathogenicity of P. cubensis, we
used RNA-Seq to improve the quality of its reference
genome sequence. We also characterized the RNA-Seq
dataset to inventory transcript isoforms and infer alternative
splicing...
Controversial end member models for the growth and evolution of the Tibetan Plateau demand quantitative constraints of the lithospheric rheology. Direct determinations of bulk crustal rheology, however, remain relatively sparse. Here we use the flexural rebound of lacustrine shorelines developed during the Lingtong highstand around Siling Co, in central Tibet,...
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lateral flow of the deep crust (Bird, 1991; 53
Royden et al., 1997; Royden et al., 2008; Shen et al
The Grimms’ Brothers left their mark on history when they published their first edition of the Kinder- und Hausmärchen gesammelt durch die Brüder Grimm (Nursery and Household tales Collected by the Brothers Grimm) in 1812. Among these newly published tales was that of Snow White. Within the paradigm of the...
The effects of hydrogen sulfide (H2S) on storage quality, cellular water distribution, and cell wall metabolism of strawberry fruit after subjected to shelf or cold storage were investigated. Fruit were fumigated with a range of aqueous NaHS solution (0.4-3.2 mmol/L), then stored at 20 degrees C for 3 d or...
The structural and chemical diversity of natural compounds represents a vast amount of potential in terms of new drug discovery. This project examines the cytotoxic potential of the marine natural product mandelalide A and seeks to understand whether or not exposure to this compound induces programmed cell death in cancer...
Polycomb Repressive Complex 2 (PRC2) function and DNA methylation (DNAme) are typically correlated with gene repression. Here, we show that PRC2 is required to maintain expression of maternal microRNAs (miRNAs) and long non-coding RNAs (lncRNAs) from the Gtl2-Rian-Mirg locus, which is essential for full pluripotency of iPSCs. In the absence...
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Choe,8 Don Leong Jia Jun,1,9 Xiaohua Shen,1,15 Richard I. Gregory,8
George Q. Daley,1,2 Alexander
Eukaryotic ribosome biogenesis involves ~200 assembly
factors, but how these contribute to ribosome
maturation is poorly understood. Here, we
identify a network of factors on the nascent 60S subunit
that actively remodels preribosome structure. At its hub is
Rsa4, a direct substrate of the force-generating ATPase
Rea1. We show that...
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,
A and B; Ben-Shem et al., 2011; Rabl et al., 2011). Several dif-
ferent solution structures were
Gender relations as well as the social situation of Manchu women have long been ignored in studies of the cultural evolution of the Manchu. By setting the discussion of Manchu women in the context of cultural adaptation, this study reintroduces gender and women's problems into the research on the Manchu...
This dissertation explores the idea of applying machine learning technologies to help computer users find information and better organize electronic resources, by presenting the research work conducted in the following three applications: FolderPredictor, Stacking Recommendation Engines, and Integrating Learning and Reasoning.
FolderPredictor is an intelligent desktop software tool that helps...
Bimetallic catalysis is a promising way to tune the catalytic properties of heterogeneous catalysts. In particular, bimetallic catalysts are extensively used to enhance the selectivity of monometallic catalysts in a variety of contexts, from oxidation catalysis to oxygenate coupling. In this work, we investigate PdxCuy/SiO2 and PdxAgy/SiO2 catalysts in the...
Interest in personal computer networks has grown
rapidly in recent years. As the personal computer
becomes more and more popular, implementing computer
networks on those small computers has become an
interesting topic. Such networks are usually inexpensive
and can be easily installed and maintained.
In this thesis work, CLASSLAN, such...
Background: Cytosine DNA methylation (5mC) is an epigenetic modification that is important to genome stability and regulation of gene expression. Perturbations of 5mC have been implicated as a cause of phenotypic variation among plants regenerated through in vitro culture systems. However, the pattern of change in 5mC and its functional...
Polycyclic aromatic hydrocarbons (PAHs) are among the most widely known and studied environmental contaminants, originating from a range of natural and anthropogenic sources. PAHs are known to occur in the environment as complex mixtures, containing both unsubstituted PAHs, as well as a range of PAH derivatives. Among the less-studied of...
Surface transient storage (STS) and hyporheic transient storage (HTS) have functional significance in stream ecology and hydrology. Currently, tracer techniques couple STS and HTS effects on stream nutrient cycling; however, STS resides in localized areas of the surface stream and HTS resides in the hyporheic zone. These contrasting environments result...
The advent of deep learning models leads to a substantial improvement in a wide range of NLP tasks, achieving state-of-art performances without any hand-crafted features. However, training deep models requires a massive amount of labeled data. Labeling new data as a new task or domain emerges consumes time and efforts...
Anthropogenic semivolatile organic compounds (SOCs) that persist in the environment, bioaccumulate, are toxic at
low concentrations, and undergo long-range atmospheric transport (LRT) were identified and quantified in the atmosphere
of a Saharan dust source region (Mali) and during Saharan dust incursions at downwind sites in the eastern
Caribbean (U.S. Virgin...
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., Reid et al., 2003) and are a func-
tion of geologic (e.g., Ben-Ami et al., 2012; Moreno et al., 2006